Package: shinyepico
Title: ShinyÉPICo
Version: 1.16.0
Authors@R: person('Octavio', 'Morante-Palacios', email = 'octaviompa@gmail.com', role = c('cre', 'aut'))
Description: ShinyÉPICo is a graphical pipeline to analyze Illumina DNA methylation arrays (450k or EPIC). It allows to calculate differentially methylated positions and differentially methylated regions in a user-friendly interface. Moreover, it includes several options to export the results and obtain files to perform downstream analysis.
License: AGPL-3 + file LICENSE
Depends: R (>= 4.3.0)
Imports: DT (>= 0.15.0), data.table (>= 1.13.0), doParallel (>= 1.0.0),
        dplyr (>= 1.0.9), foreach (>= 1.5.0), GenomicRanges (>=
        1.38.0), ggplot2 (>= 3.3.0), gplots (>= 3.0.0), heatmaply (>=
        1.1.0), limma (>= 3.42.0), minfi (>= 1.32.0), plotly (>=
        4.9.2), reshape2 (>= 1.4.0), rlang (>= 1.0.2), rmarkdown (>=
        2.3.0), rtracklayer (>= 1.46.0), shiny (>= 1.5.0), shinyWidgets
        (>= 0.5.0), shinycssloaders (>= 0.3.0), shinyjs (>= 1.1.0),
        shinythemes (>= 1.1.0), statmod (>= 1.4.0), tidyr (>= 1.2.0),
        zip (>= 2.1.0)
Suggests: knitr (>= 1.30.0), mCSEA (>= 1.10.0),
        IlluminaHumanMethylation450kanno.ilmn12.hg19,
        IlluminaHumanMethylation450kmanifest,
        IlluminaHumanMethylationEPICanno.ilm10b4.hg19,
        IlluminaHumanMethylationEPICmanifest, testthat, minfiData,
        BiocStyle
Encoding: UTF-8
RoxygenNote: 7.1.1
URL: https://github.com/omorante/shiny_epico
BugReports: https://github.com/omorante/shiny_epico/issues
VignetteBuilder: knitr
biocViews:
        DifferentialMethylation,DNAMethylation,Microarray,Preprocessing,QualityControl
git_url: https://git.bioconductor.org/packages/shinyepico
git_branch: RELEASE_3_21
git_last_commit: 81e52f4
git_last_commit_date: 2025-04-15
Repository: Bioconductor 3.21
Date/Publication: 2025-04-15
NeedsCompilation: no
Packaged: 2025-04-16 03:43:21 UTC; biocbuild
Author: Octavio Morante-Palacios [cre, aut]
Maintainer: Octavio Morante-Palacios <octaviompa@gmail.com>
Built: R 4.5.0; ; 2025-04-16 15:32:00 UTC; windows
