Package: simPIC
Version: 1.4.0
Date: 2023-02-02
Type: Package
Title: simPIC: flexible simulation of paired-insertion counts for
        single-cell ATAC-sequencing data
Authors@R: c(person("Sagrika", "Chugh", role=c("aut","cre"), 
           email = "sagrika.chugh@gmail.com", 
           comment = c(ORCID = "0000-0002-8050-5214")),
           person("Davis","McCarthy", role=c("aut")),
           person("Heejung","Shim", role=c("aut")))
Depends: R (>= 4.4.0), SingleCellExperiment
Imports: BiocGenerics, checkmate (>= 2.0.0), fitdistrplus, matrixStats,
        Matrix, stats, SummarizedExperiment, actuar, rlang, S4Vectors,
        methods, scales, scuttle
Description: simPIC is a package for simulating single-cell ATAC-seq count data.
    It provides a user-friendly, well documented interface for data simulation.
    Functions are provided for parameter estimation, realistic scATAC-seq data 
    simulation, and comparing real and simulated datasets.
biocViews: SingleCell, ATACSeq, Software, Sequencing, ImmunoOncology,
        DataImport
License: GPL-3
Encoding: UTF-8
Suggests: ggplot2 (>= 3.4.0), knitr, rmarkdown, BiocStyle, testthat (>=
        3.0.0)
VignetteBuilder: knitr
RoxygenNote: 7.3.1
Config/testthat/edition: 3
URL: https://github.com/sagrikachugh/simPIC
BugReports: https://github.com/sagrikachugh/simPIC/issues
git_url: https://git.bioconductor.org/packages/simPIC
git_branch: RELEASE_3_21
git_last_commit: ff4e724
git_last_commit_date: 2025-04-15
Repository: Bioconductor 3.21
Date/Publication: 2025-04-15
NeedsCompilation: no
Packaged: 2025-04-16 03:46:45 UTC; biocbuild
Author: Sagrika Chugh [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-8050-5214>),
  Davis McCarthy [aut],
  Heejung Shim [aut]
Maintainer: Sagrika Chugh <sagrika.chugh@gmail.com>
Built: R 4.5.0; ; 2025-04-16 15:33:23 UTC; windows
