Package: singscore
Type: Package
Title: Rank-based single-sample gene set scoring method
Version: 1.28.0
Authors@R: c(
            person("Dharmesh","Bhuva", "D.", email = "bhuva.d@wehi.edu.au", role = c("aut"), comment = c(ORCID = '0000-0002-6398-9157')),
            person("Ruqian", "Lyu", email = "ruqianl@student.unimelb.edu.au", role = c("aut", "ctb")),
            person("Momeneh", "Foroutan", email = "foroutan.m@wehi.edu.au", role = c("aut", "ctb"), comment = c(ORCID = '0000-0002-1440-0457')),
            person("Malvika", "Kharbanda", email = "kharbanda.m@wehi.edu.au", role = c("aut", "cre"), comment = c(ORCID = '0000-0001-9726-3023'))
            )
Description: A simple single-sample gene signature scoring method that uses rank-based 
  statistics to analyze the sample's gene expression profile. It scores the expression activities of 
  gene sets at a single-sample level.
biocViews: Software, GeneExpression, GeneSetEnrichment
Depends: R (>= 3.6)
Imports: methods, stats, graphics, ggplot2, grDevices, ggrepel,
        GSEABase, plotly, tidyr, plyr, magrittr, reshape, edgeR,
        RColorBrewer, Biobase, BiocParallel, SummarizedExperiment,
        matrixStats, reshape2, S4Vectors
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.2.0
Roxygen: list(markdown = TRUE)
Collate: 'singscore.R' 'rankAndScoring.R' 'permuTest.R'
        'generatNullGeneric.R' 'multiScoreGeneric.R' 'plot.R'
        'plotRankDensityGeneric.R' 'rankGenesGeneric.R'
        'simpleScoreGeneric.R' 'stableGenes.R'
Suggests: pkgdown, BiocStyle, hexbin, knitr, rmarkdown, testthat, covr
VignetteBuilder: knitr
URL: https://davislaboratory.github.io/singscore
BugReports: https://github.com/DavisLaboratory/singscore/issues
git_url: https://git.bioconductor.org/packages/singscore
git_branch: RELEASE_3_21
git_last_commit: 9f4d8ba
git_last_commit_date: 2025-04-15
Repository: Bioconductor 3.21
Date/Publication: 2025-04-15
NeedsCompilation: no
Packaged: 2025-04-16 03:48:43 UTC; biocbuild
Author: Dharmesh D. Bhuva [aut] (ORCID:
    <https://orcid.org/0000-0002-6398-9157>),
  Ruqian Lyu [aut, ctb],
  Momeneh Foroutan [aut, ctb] (ORCID:
    <https://orcid.org/0000-0002-1440-0457>),
  Malvika Kharbanda [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-9726-3023>)
Maintainer: Malvika Kharbanda <kharbanda.m@wehi.edu.au>
Built: R 4.5.0; ; 2025-04-16 15:33:40 UTC; windows
