Package: sosta
Title: A package for the analysis of anatomical tissue structures in
        spatial omics data
Version: 1.0.1
Authors@R: c(
    person("Samuel", "Gunz", , "samuel.gunz@uzh.ch", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-8909-0932")),
    person("Mark D.", "Robinson", role=c("aut", "fnd"), 
	    email="mark.robinson@mls.uzh.ch"))
Description: sosta (Spatial Omics STructure Analysis) is a package for analyzing
    spatial omics data to explore tissue organization at the anatomical structure level.
    It reconstructs anatomically relevant structures based on molecular features 
    or cell types. It further calculates a range of metrics at the structure level
    to quantitatively describe tissue architecture. The package is designed to integrate 
    with other packages for the analysis of spatial omics data.
License: GPL (>= 3) + file LICENSE
Encoding: UTF-8
Depends: R (>= 4.4.0)
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
URL: https://github.com/sgunz/sosta, https://sgunz.github.io/sosta/
BugReports: https://github.com/sgunz/sosta/issues
biocViews: Software, Spatial, Transcriptomics, Visualization
Imports: terra, sf, smoothr, spatstat.explore, spatstat.geom,
        SpatialExperiment, SingleCellExperiment, dplyr, ggplot2,
        patchwork, SummarizedExperiment, stats, rlang, parallel,
        EBImage, spatstat.random, S4Vectors
Suggests: knitr, rmarkdown, BiocStyle, ExperimentHub, lme4, lmerTest,
        ggfortify, tidyr, testthat (>= 3.0.0)
VignetteBuilder: knitr
Config/testthat/edition: 3
LazyData: true
git_url: https://git.bioconductor.org/packages/sosta
git_branch: RELEASE_3_21
git_last_commit: 0ab9772
git_last_commit_date: 2025-07-17
Repository: Bioconductor 3.21
Date/Publication: 2025-07-21
NeedsCompilation: no
Packaged: 2025-07-22 02:36:09 UTC; biocbuild
Author: Samuel Gunz [aut, cre] (ORCID: <https://orcid.org/0000-0002-8909-0932>),
  Mark D. Robinson [aut, fnd]
Maintainer: Samuel Gunz <samuel.gunz@uzh.ch>
Built: R 4.5.1; ; 2025-07-22 14:17:55 UTC; windows
