Package: specL
Type: Package
Title: specL - Prepare Peptide Spectrum Matches for Use in Targeted
        Proteomics
Version: 1.42.0
Authors@R: c(person("Christian", "Panse", 
        email = "cp@fgcz.ethz.ch",
        role = c("aut", "cre"),
        comment = c(ORCID = "0000-0003-1975-3064")),
    person("Jonas", "Grossmann",
        email = "jg@fgcz.ethz.ch",
	role = "aut",
	comment = c(ORCID = "0000-0002-6899-9020")),
    person("Christian", "Trachsel",
	role = "aut"),
    person("Witold E.", "Wolski",
	email = "wew@fgcz.ethz.ch",
	role = "ctb"))
Depends: R (>= 4.1), DBI (>= 0.5), methods (>= 3.3), protViz (>= 0.7),
        RSQLite (>= 1.1), seqinr (>= 3.3)
Suggests: BiocGenerics, BiocStyle (>= 2.2), knitr (>= 1.15), rmarkdown,
        RUnit (>= 0.4)
Description: provides a functions for generating spectra libraries
    that can be used for MRM SRM MS workflows in proteomics. The
    package provides a BiblioSpec reader, a function which can add
    the protein information using a FASTA formatted amino acid
    file, and an export method for using the created library in the
    Spectronaut software. The package is developed, tested and used
    at the Functional Genomics Center Zurich <https://fgcz.ch>.
License: GPL-3
URL: http://bioconductor.org/packages/specL/
Collate: read.bibliospec.R genSwathIonLib.R annotate.protein_id.R
        AllGenerics.R specL.R specLSet.R cdsw.R zzz.R
biocViews: MassSpectrometry, Proteomics
LazyData: true
BugReports: https://github.com/fgcz/specL/issues
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/specL
git_branch: RELEASE_3_21
git_last_commit: 803d372
git_last_commit_date: 2025-04-15
Repository: Bioconductor 3.21
Date/Publication: 2025-04-15
NeedsCompilation: no
Packaged: 2025-04-16 03:55:39 UTC; biocbuild
Author: Christian Panse [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-1975-3064>),
  Jonas Grossmann [aut] (ORCID: <https://orcid.org/0000-0002-6899-9020>),
  Christian Trachsel [aut],
  Witold E. Wolski [ctb]
Maintainer: Christian Panse <cp@fgcz.ethz.ch>
Built: R 4.5.0; ; 2025-04-16 15:36:40 UTC; windows
