Type: Package
Package: tidybulk
Title: Brings transcriptomics to the tidyverse
Version: 1.20.0
Authors@R: c(person("Stefano", "Mangiola", email = "mangiolastefano@gmail.com",
                  role = c("aut", "cre")),
            person("Maria", "Doyle", email = "Maria.Doyle@petermac.org",
            role = c("ctb"))
                  )
Description: This is a collection of utility functions that allow
    to perform exploration of and calculations to RNA sequencing data, in
    a modular, pipe-friendly and tidy fashion.
License: GPL-3
Depends: R (>= 4.4.0), ttservice (>= 0.3.6)
Imports: tibble, readr, dplyr (>= 1.1.0), magrittr, tidyr, stringi,
        stringr, rlang, purrr, tidyselect, preprocessCore, stats,
        parallel, utils, lifecycle, scales, SummarizedExperiment,
        GenomicRanges, methods, S4Vectors, crayon, Matrix
Suggests: BiocStyle, testthat, vctrs, AnnotationDbi, BiocManager,
        Rsubread, e1071, edgeR, limma, org.Hs.eg.db, org.Mm.eg.db, sva,
        GGally, knitr, qpdf, covr, Seurat, KernSmooth, Rtsne, ggplot2,
        widyr, clusterProfiler, msigdbr, DESeq2, broom, survival, boot,
        betareg, tidyHeatmap, pasilla, ggrepel, devtools, functional,
        survminer, tidySummarizedExperiment, markdown, uwot,
        matrixStats, igraph, EGSEA, IRanges, here, glmmSeq, pbapply,
        pbmcapply, lme4, glmmTMB, MASS, pkgconfig
VignetteBuilder: knitr
RdMacros: lifecycle
Biarch: true
biocViews: AssayDomain, Infrastructure, RNASeq, DifferentialExpression,
        GeneExpression, Normalization, Clustering, QualityControl,
        Sequencing, Transcription, Transcriptomics
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.2
LazyDataCompression: xz
URL: https://github.com/stemangiola/tidybulk
BugReports: https://github.com/stemangiola/tidybulk/issues
git_url: https://git.bioconductor.org/packages/tidybulk
git_branch: RELEASE_3_21
git_last_commit: 101515a
git_last_commit_date: 2025-04-15
Repository: Bioconductor 3.21
Date/Publication: 2025-04-15
NeedsCompilation: no
Packaged: 2025-04-16 04:11:56 UTC; biocbuild
Author: Stefano Mangiola [aut, cre],
  Maria Doyle [ctb]
Maintainer: Stefano Mangiola <mangiolastefano@gmail.com>
Built: R 4.5.0; ; 2025-04-16 15:42:49 UTC; windows
