Index of /packages/3.21/bioc/src/contrib
Name Last modified Size
Parent Directory -
Archive/ 2025-10-16 16:00 -
PACKAGES.rds 2025-10-16 16:04 164K
PACKAGES.gz 2025-10-16 16:04 220K
PACKAGES 2025-10-16 16:04 877K
singscore_1.28.1.tar.gz 2025-10-16 16:00 3.0M
rhdf5client_1.30.1.tar.gz 2025-10-16 16:00 533K
Rarr_1.8.1.tar.gz 2025-10-16 16:00 1.4M
Moonlight2R_1.6.3.tar.gz 2025-10-16 16:00 4.9M
miaViz_1.16.1.tar.gz 2025-10-16 16:00 2.9M
maaslin3_1.0.2.tar.gz 2025-10-16 16:00 1.1M
extraChIPs_1.12.2.tar.gz 2025-10-16 16:00 3.8M
bedbaser_1.0.4.tar.gz 2025-10-16 16:00 252K
transmogR_1.4.2.tar.gz 2025-10-13 16:00 581K
scruff_1.26.1.tar.gz 2025-10-13 16:00 1.7M
Sconify_1.28.1.tar.gz 2025-10-13 16:00 4.3M
orthos_1.6.2.tar.gz 2025-10-13 16:00 2.9M
musicatk_2.2.2.tar.gz 2025-10-13 16:00 6.8M
motifTestR_1.4.2.tar.gz 2025-10-13 16:00 1.0M
limpca_1.4.2.tar.gz 2025-10-13 16:00 4.7M
hicVennDiagram_1.6.1.tar.gz 2025-10-13 16:00 1.1M
gINTomics_1.4.1.tar.gz 2025-10-13 16:00 3.5M
ggkegg_1.6.2.tar.gz 2025-10-13 16:00 3.5M
ExploreModelMatrix_1.20.1.tar.gz 2025-10-13 16:00 2.6M
dittoSeq_1.20.1.tar.gz 2025-10-13 16:00 2.5M
demuxSNP_1.6.1.tar.gz 2025-10-13 16:00 2.0M
BiocGenerics_0.54.1.tar.gz 2025-10-13 16:00 55K
benchdamic_1.14.4.tar.gz 2025-10-13 16:00 5.8M
RbowtieCuda_1.0.10.tar.gz 2025-10-12 18:15 28M
xCell2_1.0.11.tar.gz 2025-10-09 16:00 3.1M
XAItest_1.0.3.tar.gz 2025-10-09 16:00 889K
MetNet_1.26.2.tar.gz 2025-10-09 16:00 4.1M
GSVA_2.2.1.tar.gz 2025-10-09 16:00 2.6M
geomeTriD_1.2.2.tar.gz 2025-10-09 16:00 1.1M
enrichViewNet_1.6.2.tar.gz 2025-10-09 16:00 4.3M
CATALYST_1.32.1.tar.gz 2025-10-09 16:00 11M
SPOTlight_1.12.2.tar.gz 2025-10-06 16:00 4.1M
SpatialOmicsOverlay_1.8.1.tar.gz 2025-10-06 16:00 4.4M
NanoStringNCTools_1.16.2.tar.gz 2025-10-06 16:00 371K
ggbio_1.56.1.tar.gz 2025-10-06 16:00 3.1M
cageminer_1.14.2.tar.gz 2025-10-06 16:00 1.3M
universalmotif_1.26.3.tar.gz 2025-10-02 16:00 3.5M
Statial_1.10.3.tar.gz 2025-10-02 16:00 9.2M
singleCellTK_2.18.2.tar.gz 2025-10-02 16:00 3.2M
peakPantheR_1.22.1.tar.gz 2025-10-02 16:00 3.9M
orthogene_1.14.01.tar.gz 2025-10-02 16:00 2.6M
EpiCompare_1.12.2.tar.gz 2025-10-02 16:00 1.9M
CEMiTool_1.32.2.tar.gz 2025-10-02 16:00 5.5M
BulkSignalR_1.0.5.tar.gz 2025-10-02 16:00 3.0M
biodb_1.16.1.tar.gz 2025-10-02 16:00 1.1M
BANDITS_1.24.1.tar.gz 2025-10-02 16:00 1.3M
UMI4Cats_1.18.2.tar.gz 2025-09-29 16:00 3.7M
transite_1.26.1.tar.gz 2025-09-29 16:00 636K
SurfR_1.4.2.tar.gz 2025-09-29 16:00 373K
PRONE_1.2.2.tar.gz 2025-09-29 16:00 9.1M
MetMashR_1.2.1.tar.gz 2025-09-29 16:00 6.1M
methylInheritance_1.32.1.tar.gz 2025-09-29 16:00 1.7M
idr2d_1.22.1.tar.gz 2025-09-29 16:00 1.5M
HiCDOC_1.10.3.tar.gz 2025-09-29 16:00 3.4M
GladiaTOX_1.24.2.tar.gz 2025-09-29 16:00 4.0M
ggcyto_1.36.1.tar.gz 2025-09-29 16:00 21M
fenr_1.6.2.tar.gz 2025-09-29 16:00 2.0M
ChAMP_2.38.1.tar.gz 2025-09-29 16:00 7.9M
BSgenomeForge_1.8.1.tar.gz 2025-09-29 16:00 694K
betaHMM_1.4.2.tar.gz 2025-09-29 16:00 3.8M
AlpsNMR_4.10.1.tar.gz 2025-09-29 16:00 3.7M
TPP2D_1.24.1.tar.gz 2025-09-25 16:00 2.3M
spicyR_1.20.5.tar.gz 2025-09-25 16:00 3.2M
SeqArray_1.48.3.tar.gz 2025-09-25 16:00 3.7M
Rtpca_1.18.1.tar.gz 2025-09-25 16:00 2.2M
RiboCrypt_1.14.1.tar.gz 2025-09-25 16:00 12M
ORFik_1.28.3.tar.gz 2025-09-25 16:00 4.2M
MSstatsLiP_1.14.2.tar.gz 2025-09-25 16:00 1.8M
MOSClip_1.2.3.tar.gz 2025-09-25 16:00 2.1M
immunotation_1.16.3.tar.gz 2025-09-25 16:00 2.1M
AnVIL_1.20.4.tar.gz 2025-09-25 16:00 1.2M
sitePath_1.24.1.tar.gz 2025-09-22 16:00 1.2M
PhosR_1.18.5.tar.gz 2025-09-22 16:00 7.4M
ngsReports_2.10.1.tar.gz 2025-09-22 16:00 3.2M
monaLisa_1.14.1.tar.gz 2025-09-22 16:00 6.0M
MIRit_1.4.2.tar.gz 2025-09-22 16:00 2.6M
MicrobiotaProcess_1.20.2.tar.gz 2025-09-22 16:00 4.8M
ggtreeExtra_1.18.1.tar.gz 2025-09-22 16:00 526K
GenomeInfoDb_1.44.3.tar.gz 2025-09-22 16:00 3.4M
epigraHMM_1.16.1.tar.gz 2025-09-22 16:00 723K
BioNERO_1.16.3.tar.gz 2025-09-22 16:00 4.8M
xcms_4.6.4.tar.gz 2025-09-18 16:00 9.5M
TRONCO_2.40.1.tar.gz 2025-09-18 16:00 4.2M
omXplore_1.2.3.tar.gz 2025-09-18 16:00 2.0M
GeomxTools_3.12.1.tar.gz 2025-09-18 16:00 16M
tximeta_1.26.2.tar.gz 2025-09-15 16:00 1.3M
GSEABase_1.70.1.tar.gz 2025-09-15 16:00 293K
BiocPkgTools_1.26.4.tar.gz 2025-09-15 16:00 1.5M
BiocParallel_1.42.2.tar.gz 2025-09-15 16:00 1.1M
SAIGEgds_2.8.1.tar.gz 2025-09-11 16:00 2.0M
RCX_1.12.1.tar.gz 2025-09-11 16:00 4.6M
limpa_1.0.6.tar.gz 2025-09-11 16:00 537K
Rsamtools_2.24.1.tar.gz 2025-09-08 16:00 2.8M
OmnipathR_3.16.2.tar.gz 2025-09-04 16:00 3.5M
EnrichmentBrowser_2.38.1.tar.gz 2025-09-04 16:00 1.3M
DMRcate_3.4.1.tar.gz 2025-09-04 16:00 818K
openCyto_2.20.1.tar.gz 2025-09-01 16:00 1.8M
MSstatsPTM_2.10.3.tar.gz 2025-09-01 16:00 2.8M
jazzPanda_1.0.2.tar.gz 2025-08-28 16:00 4.7M
DESeq2_1.48.2.tar.gz 2025-08-28 16:00 2.6M
ClassifyR_3.12.5.tar.gz 2025-08-28 16:00 2.4M
BiocFileCache_2.16.2.tar.gz 2025-08-28 16:00 723K
pgxRpi_1.4.4.tar.gz 2025-08-21 16:00 2.8M
variancePartition_1.38.1.tar.gz 2025-08-18 16:00 4.7M
MsQuality_1.8.3.tar.gz 2025-08-18 16:00 4.2M
struct_1.20.2.tar.gz 2025-08-14 16:00 598K
plyxp_1.2.7.tar.gz 2025-08-14 16:00 1.2M
fastreeR_1.12.5.tar.gz 2025-08-14 16:00 3.2M
CytoGLMM_1.16.1.tar.gz 2025-08-14 16:00 346K
CyTOFpower_1.14.0.tar.gz 2025-08-14 16:00 312K
TVTB_1.34.1.tar.gz 2025-08-11 16:00 1.5M
OUTRIDER_1.26.3.tar.gz 2025-08-04 16:00 2.6M
limma_3.64.3.tar.gz 2025-08-04 16:00 2.7M
MSstatsConvert_1.18.1.tar.gz 2025-07-31 16:00 1.8M
LOBSTAHS_1.34.1.tar.gz 2025-07-31 16:00 2.9M
alabaster.base_1.8.1.tar.gz 2025-07-31 16:00 330K
syntenet_1.10.2.tar.gz 2025-07-28 16:00 4.5M
doubletrouble_1.8.1.tar.gz 2025-07-28 16:00 5.0M
deconvR_1.14.2.tar.gz 2025-07-28 16:00 3.8M
dandelionR_1.0.2.tar.gz 2025-07-28 16:00 9.0M
BgeeCall_1.24.1.tar.gz 2025-07-28 16:00 5.7M
SparseArray_1.8.1.tar.gz 2025-07-24 16:00 456K
sosta_1.0.1.tar.gz 2025-07-24 16:00 5.4M
ExperimentHub_2.16.1.tar.gz 2025-07-24 16:00 490K
CaMutQC_1.4.5.tar.gz 2025-07-24 16:00 5.3M
AnnotationHub_3.16.1.tar.gz 2025-07-24 16:00 1.0M
AlphaMissenseR_1.4.2.tar.gz 2025-07-24 16:00 2.7M
COTAN_2.8.5.tar.gz 2025-07-21 16:00 4.0M
cn.farms_1.56.2.tar.gz 2025-07-21 16:00 2.3M
BayesSpace_1.18.4.tar.gz 2025-07-21 16:00 3.1M
openPrimeR_1.30.1.tar.gz 2025-07-17 16:00 2.1M
ggtree_3.16.3.tar.gz 2025-07-17 16:00 353K
ggmsa_1.14.1.tar.gz 2025-07-17 16:00 3.1M
enrichplot_1.28.4.tar.gz 2025-07-17 16:00 97K
broadSeq_1.2.4.tar.gz 2025-07-17 16:00 4.1M
scDotPlot_1.2.1.tar.gz 2025-07-14 16:00 1.8M
mia_1.16.1.tar.gz 2025-07-14 16:00 3.0M
gg4way_1.6.1.tar.gz 2025-07-14 16:00 2.9M
fgsea_1.34.2.tar.gz 2025-07-14 16:00 4.7M
cellxgenedp_1.12.1.tar.gz 2025-07-14 16:00 472K
PharmacoGx_3.12.2.tar.gz 2025-07-10 16:00 4.5M
GenomicScores_2.20.2.tar.gz 2025-07-10 16:00 1.8M
gdsfmt_1.44.1.tar.gz 2025-07-10 16:00 2.8M
edgeR_4.6.3.tar.gz 2025-07-10 16:00 3.5M
tximport_1.36.1.tar.gz 2025-07-07 16:00 308K
MSstats_4.16.1.tar.gz 2025-07-07 16:00 429K
ggsc_1.6.1.tar.gz 2025-07-07 16:00 82K
DropletUtils_1.28.1.tar.gz 2025-07-07 16:00 588K
biosigner_1.36.4.tar.gz 2025-07-07 16:00 5.0M
MsBackendMassbank_1.16.1.tar.gz 2025-07-03 16:00 415K
GenomicPlot_1.6.1.tar.gz 2025-07-03 16:00 3.8M
ENmix_1.44.3.tar.gz 2025-07-03 16:00 20M
topGO_2.60.1.tar.gz 2025-06-30 16:00 1.9M
snifter_1.18.1.tar.gz 2025-06-30 16:00 727K
RCy3_2.28.1.tar.gz 2025-06-30 16:00 6.5M
rcellminer_2.30.1.tar.gz 2025-06-30 16:00 2.5M
PhyloProfile_2.0.6.tar.gz 2025-06-30 16:00 1.4M
immApex_1.2.5.tar.gz 2025-06-30 16:00 2.8M
graper_1.24.2.tar.gz 2025-06-30 16:00 1.0M
txdbmaker_1.4.2.tar.gz 2025-06-26 16:00 1.0M
spatialHeatmap_2.14.1.tar.gz 2025-06-26 16:00 34M
QuasR_1.48.1.tar.gz 2025-06-26 16:00 2.4M
Macarron_1.12.2.tar.gz 2025-06-26 16:00 591K
gemma.R_3.4.5.tar.gz 2025-06-26 16:00 2.3M
ComplexHeatmap_2.24.1.tar.gz 2025-06-26 16:00 1.4M
BUSpaRse_1.22.1.tar.gz 2025-06-26 16:00 627K
TDbasedUFEadv_1.8.1.tar.gz 2025-06-23 16:00 3.8M
SVP_1.0.2.tar.gz 2025-06-23 16:00 4.4M
simpleSeg_1.10.1.tar.gz 2025-06-23 16:00 4.5M
shinyDSP_1.0.3.tar.gz 2025-06-23 16:00 2.7M
scTensor_2.18.2.tar.gz 2025-06-23 16:00 10M
LimROTS_1.0.3.tar.gz 2025-06-23 16:00 763K
KEGGREST_1.48.1.tar.gz 2025-06-23 16:00 234K
HuBMAPR_1.2.2.tar.gz 2025-06-23 16:00 1.4M
bambu_3.10.1.tar.gz 2025-06-23 16:00 2.2M
annotate_1.86.1.tar.gz 2025-06-23 16:00 1.8M
SCnorm_1.30.1.tar.gz 2025-06-16 16:00 3.0M
ontoProc_2.2.1.tar.gz 2025-06-16 16:00 13M
parody_1.66.1.tar.gz 2025-06-12 16:00 489K
karyoploteR_1.34.2.tar.gz 2025-06-12 16:00 2.6M
gDNAx_1.6.1.tar.gz 2025-06-12 16:00 735K
FRASER_2.4.3.tar.gz 2025-06-12 16:00 2.6M
ArrayExpress_1.68.0.tar.gz 2025-06-12 16:00 137K
rhdf5_2.52.1.tar.gz 2025-06-09 16:00 1.2M
MsExperiment_1.10.1.tar.gz 2025-06-09 16:00 1.9M
IsoBayes_1.6.1.tar.gz 2025-06-09 16:00 1.8M
ggspavis_1.14.3.tar.gz 2025-06-09 16:00 6.0M
CopyNumberPlots_1.24.0.tar.gz 2025-06-09 16:00 1.8M
CNVfilteR_1.22.0.tar.gz 2025-06-09 16:00 1.0M
miRcomp_1.38.1.tar.gz 2025-06-05 16:00 4.0M
HPAanalyze_1.26.1.tar.gz 2025-06-05 16:00 5.0M
bugsigdbr_1.14.3.tar.gz 2025-06-05 16:00 329K
atena_1.14.1.tar.gz 2025-06-05 16:00 1.3M
systemPipeR_2.14.2.tar.gz 2025-06-02 16:00 6.5M
scQTLtools_1.0.3.tar.gz 2025-06-02 16:00 8.4M
S4Arrays_1.8.1.tar.gz 2025-06-02 16:00 288K
regioneR_1.40.1.tar.gz 2025-06-02 16:00 2.0M
pathMED_1.0.2.tar.gz 2025-06-02 16:00 6.3M
ReducedExperiment_1.0.2.tar.gz 2025-05-29 16:00 3.3M
MetaboDynamics_1.0.2.tar.gz 2025-05-29 16:00 6.7M
LRBaseDbi_2.18.1.tar.gz 2025-05-29 16:00 146K
HilbertVisGUI_1.66.1.tar.gz 2025-05-29 16:00 148K
GenomicDataCommons_1.32.1.tar.gz 2025-05-29 16:00 2.7M
alabaster.bumpy_1.8.1.tar.gz 2025-05-29 16:00 236K
Spectra_1.18.2.tar.gz 2025-05-26 16:00 1.8M
rigvf_1.0.2.tar.gz 2025-05-26 16:00 217K
nondetects_2.38.1.tar.gz 2025-05-26 16:00 130K
CompoundDb_1.12.1.tar.gz 2025-05-26 16:00 1.3M
BiocHubsShiny_1.8.1.tar.gz 2025-05-26 16:00 1.6M
ANCOMBC_2.10.1.tar.gz 2025-05-26 16:00 1.2M
SynExtend_1.20.2.tar.gz 2025-05-22 16:00 3.1M
SpectraQL_1.2.1.tar.gz 2025-05-22 16:00 514K
HilbertVis_1.66.1.tar.gz 2025-05-22 16:00 1.2M
h5mread_1.0.1.tar.gz 2025-05-22 16:00 2.4M
BiocCheck_1.44.2.tar.gz 2025-05-22 16:00 309K
scrapper_1.2.1.tar.gz 2025-05-19 16:00 872K
ChIPseqR_1.62.0.tar.gz 2025-05-19 16:00 730K
biocmake_1.0.1.tar.gz 2025-05-19 16:00 223K
TENxIO_1.10.2.tar.gz 2025-05-15 16:00 256K
RegEnrich_1.18.1.tar.gz 2025-05-15 16:00 1.1M
MSnbase_2.34.1.tar.gz 2025-05-15 16:00 7.7M
methylPipe_1.42.1.tar.gz 2025-05-15 16:00 793K
MetaboCoreUtils_1.16.1.tar.gz 2025-05-15 16:00 1.3M
doppelgangR_1.36.1.tar.gz 2025-05-15 16:00 453K
yamss_1.34.1.tar.gz 2025-05-12 16:00 424K
xenLite_1.2.1.tar.gz 2025-05-12 16:00 3.2M
vmrseq_1.0.1.tar.gz 2025-05-12 16:00 3.3M
VisiumIO_1.4.3.tar.gz 2025-05-12 16:00 1.5M
VariantAnnotation_1.54.1.tar.gz 2025-05-12 16:00 2.0M
VanillaICE_1.70.1.tar.gz 2025-05-12 16:00 2.1M
TreeSummarizedExperiment_2.16.1.tar.gz 2025-05-12 16:00 1.1M
TrajectoryUtils_1.16.1.tar.gz 2025-05-12 16:00 338K
tidySummarizedExperiment_1.18.1.tar.gz 2025-05-12 16:00 360K
tidySpatialExperiment_1.4.1.tar.gz 2025-05-12 16:00 4.3M
tidySingleCellExperiment_1.18.1.tar.gz 2025-05-12 16:00 1.8M
tidyCoverage_1.4.1.tar.gz 2025-05-12 16:00 3.7M
TENET_1.0.1.tar.gz 2025-05-12 16:00 1.4M
stageR_1.30.1.tar.gz 2025-05-12 16:00 779K
sRACIPE_2.0.1.tar.gz 2025-05-12 16:00 2.0M
SpliceWiz_1.10.1.tar.gz 2025-05-12 16:00 4.8M
SpatialFeatureExperiment_1.10.1.tar.gz 2025-05-12 16:00 1.8M
SpatialExperiment_1.18.1.tar.gz 2025-05-12 16:00 5.2M
soGGi_1.40.1.tar.gz 2025-05-12 16:00 3.4M
SingleCellAlleleExperiment_1.4.1.tar.gz 2025-05-12 16:00 2.4M
SGSeq_1.42.1.tar.gz 2025-05-12 16:00 1.7M
scTreeViz_1.14.1.tar.gz 2025-05-12 16:00 2.3M
scone_1.32.1.tar.gz 2025-05-12 16:00 1.8M
scHOT_1.20.1.tar.gz 2025-05-12 16:00 2.1M
roar_1.44.1.tar.gz 2025-05-12 16:00 901K
RFLOMICS_1.0.1.tar.gz 2025-05-12 16:00 5.1M
REMP_1.32.1.tar.gz 2025-05-12 16:00 191K
regsplice_1.34.1.tar.gz 2025-05-12 16:00 287K
RcisTarget_1.28.1.tar.gz 2025-05-12 16:00 13M
RaggedExperiment_1.32.2.tar.gz 2025-05-12 16:00 670K
QTLExperiment_2.0.1.tar.gz 2025-05-12 16:00 612K
profileplyr_1.24.1.tar.gz 2025-05-12 16:00 2.5M
proDA_1.22.1.tar.gz 2025-05-12 16:00 1.4M
PhIPData_1.16.1.tar.gz 2025-05-12 16:00 821K
PDATK_1.16.1.tar.gz 2025-05-12 16:00 3.0M
PAIRADISE_1.24.1.tar.gz 2025-05-12 16:00 321K
padma_1.18.1.tar.gz 2025-05-12 16:00 1.4M
oppar_1.36.1.tar.gz 2025-05-12 16:00 3.4M
NBAMSeq_1.24.1.tar.gz 2025-05-12 16:00 312K
mpra_1.30.1.tar.gz 2025-05-12 16:00 3.1M
moanin_1.16.1.tar.gz 2025-05-12 16:00 523K
MLInterfaces_1.88.1.tar.gz 2025-05-12 16:00 2.8M
MinimumDistance_1.52.1.tar.gz 2025-05-12 16:00 2.6M
minfi_1.54.1.tar.gz 2025-05-12 16:00 505K
miloR_2.4.1.tar.gz 2025-05-12 16:00 7.1M
methrix_1.22.1.tar.gz 2025-05-12 16:00 4.0M
mariner_1.8.1.tar.gz 2025-05-12 16:00 705K
LoomExperiment_1.26.1.tar.gz 2025-05-12 16:00 253K
lipidr_2.22.1.tar.gz 2025-05-12 16:00 3.3M
lemur_1.6.1.tar.gz 2025-05-12 16:00 3.3M
isomiRs_1.36.1.tar.gz 2025-05-12 16:00 4.4M
InteractionSet_1.36.1.tar.gz 2025-05-12 16:00 391K
HERON_1.6.1.tar.gz 2025-05-12 16:00 965K
hermes_1.12.1.tar.gz 2025-05-12 16:00 4.3M
GSEABenchmarkeR_1.28.1.tar.gz 2025-05-12 16:00 571K
GenomicSuperSignature_1.16.1.tar.gz 2025-05-12 16:00 6.3M
GenomicFiles_1.44.1.tar.gz 2025-05-12 16:00 713K
genomation_1.40.1.tar.gz 2025-05-12 16:00 6.0M
ExperimentSubset_1.18.1.tar.gz 2025-05-12 16:00 307K
erma_1.24.1.tar.gz 2025-05-12 16:00 198M
epigenomix_1.48.1.tar.gz 2025-05-12 16:00 426K
DMCHMM_1.30.1.tar.gz 2025-05-12 16:00 744K
DMCFB_1.22.1.tar.gz 2025-05-12 16:00 1.1M
DEXSeq_1.54.1.tar.gz 2025-05-12 16:00 1.6M
cydar_1.32.1.tar.gz 2025-05-12 16:00 493K
coseq_1.32.1.tar.gz 2025-05-12 16:00 1.9M
CNVRanger_1.24.2.tar.gz 2025-05-12 16:00 2.0M
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