Package: BBCAnalyzer
Type: Package
Title: BBCAnalyzer: an R/Bioconductor package for visualizing base
        counts
Version: 1.40.0
Date: 2016-01-26
Author: Sarah Sandmann
Maintainer: Sarah Sandmann <sarah.sandmann@uni-muenster.de>
Description: BBCAnalyzer is a package for visualizing the relative or
        absolute number of bases, deletions and insertions at defined
        positions in sequence alignment data available as bam files in
        comparison to the reference bases. Markers for the relative
        base frequencies, the mean quality of the detected bases, known
        mutations or polymorphisms and variants called in the data may
        additionally be included in the plots.
License: LGPL-3
Imports: SummarizedExperiment, VariantAnnotation, Rsamtools, grDevices,
        GenomicRanges, IRanges, Biostrings
Suggests: BSgenome.Hsapiens.UCSC.hg19
biocViews: Sequencing, Alignment, Coverage, GeneticVariability, SNP
NeedsCompilation: no
Config/pak/sysreqs: make libbz2-dev liblzma-dev libpng-dev libxml2-dev
        libssl-dev xz-utils zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:27:19 UTC
RemoteUrl: https://github.com/bioc/BBCAnalyzer
RemoteRef: RELEASE_3_22
RemoteSha: d1181575d864b2206da5e719a48e775dfb581ad7
Packaged: 2026-02-27 09:07:26 UTC; root
Built: R 4.5.2; ; 2026-02-27 09:10:15 UTC; windows
