Package: CCAFE
Type: Package
Title: Case Control Allele Frequency Estimation
Version: 1.2.0
Authors@R: c(person("Hayley", "Wolff", email = "hayley.wolff@cuanschutz.edu", role = c("cre", "aut")))
Description: Functions to reconstruct case and control AFs from summary
        statistics. One function uses OR, NCase, NControl, and
        SE(log(OR)). The second function uses OR, NCase, NControl, and
        AF for the whole sample.
License: GPL-3
Encoding: UTF-8
LazyData: false
RoxygenNote: 7.3.2
Roxygen: list(markdown = TRUE)
Imports: dplyr, VariantAnnotation
Depends: R (>= 4.4.0)
Suggests: testthat (>= 3.0.0), rmarkdown, markdown, knitr, tidyverse,
        DescTools, cowplot, BiocStyle, GenomicRanges,
        SummarizedExperiment, S4Vectors, IRanges
VignetteBuilder: knitr
Config/testthat/edition: 3
URL: https://github.com/wolffha/CCAFE/
BugReports: https://github.com/wolffha/CCAFE/issues
biocViews: GenomeWideAssociation, ComparativeGenomics, Genetics,
        Preprocessing, SNP, Software, WholeGenome
Config/pak/sysreqs: make libbz2-dev liblzma-dev libpng-dev libxml2-dev
        libssl-dev xz-utils zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 15:35:24 UTC
RemoteUrl: https://github.com/bioc/CCAFE
RemoteRef: RELEASE_3_22
RemoteSha: 93ae3ad03adb661044d931c1e0b22b6ef894fabc
NeedsCompilation: no
Packaged: 2026-03-14 08:37:31 UTC; root
Author: Hayley Wolff [cre, aut]
Maintainer: Hayley Wolff <hayley.wolff@cuanschutz.edu>
Built: R 4.5.3; ; 2026-03-14 08:39:19 UTC; windows
