Package: FindIT2
Title: find influential TF and Target based on multi-omics data
Version: 1.16.0
Authors@R: 
    c(
    person("Guandong", "Shang", role = c("aut", "cre"),
    email = "shangguandong1996@163.com",
    comment = c(ORCID = "0000-0002-9509-0314"))
    )
Description: This package implements functions to find influential TF
        and target based on different input type. It have five module:
        Multi-peak multi-gene annotaion(mmPeakAnno module), Calculate
        regulation potential(calcRP module), Find influential Target
        based on ChIP-Seq and RNA-Seq data(Find influential Target
        module), Find influential TF based on different input(Find
        influential TF module), Calculate peak-gene or peak-peak
        correlation(peakGeneCor module). And there are also some other
        useful function like integrate different source information,
        calculate jaccard similarity for your TF.
License: Artistic-2.0
URL: https://github.com/shangguandong1996/FindIT2
BugReports: https://support.bioconductor.org/t/FindIT2
biocViews: Software, Annotation, ChIPSeq, ATACSeq, GeneRegulation,
        MultipleComparison, GeneTarget
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.2
Suggests: BiocStyle, knitr, rmarkdown, sessioninfo, testthat (>=
        3.0.0), TxDb.Athaliana.BioMart.plantsmart28
VignetteBuilder: knitr
Depends: GenomicRanges, R (>= 3.5.0)
Imports: withr, BiocGenerics, Seqinfo, rtracklayer, S4Vectors,
        GenomicFeatures, dplyr, rlang, patchwork, ggplot2,
        BiocParallel, qvalue, stringr, utils, stats, ggrepel, tibble,
        tidyr, SummarizedExperiment, MultiAssayExperiment, IRanges,
        progress, purrr, glmnet, methods
Config/testthat/edition: 3
Config/pak/sysreqs: make libbz2-dev libicu-dev liblzma-dev libpng-dev
        libxml2-dev libssl-dev xz-utils zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 15:10:30 UTC
RemoteUrl: https://github.com/bioc/FindIT2
RemoteRef: RELEASE_3_22
RemoteSha: 4bef48e5637551e6fdb85e5a86343d21013db6ea
NeedsCompilation: no
Packaged: 2026-02-24 08:27:40 UTC; root
Author: Guandong Shang [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-9509-0314>)
Maintainer: Guandong Shang <shangguandong1996@163.com>
Built: R 4.5.2; ; 2026-02-24 08:30:08 UTC; windows
