Package: GNOSIS
Type: Package
Title: Genomics explorer using statistical and survival analysis in R
Version: 1.8.0
Description: GNOSIS incorporates a range of R packages enabling users
        to efficiently explore and visualise clinical and genomic data
        obtained from cBioPortal. GNOSIS uses an intuitive GUI and
        multiple tab panels supporting a range of functionalities.
        These include data upload and initial exploration, data
        recoding and subsetting, multiple visualisations, survival
        analysis, statistical analysis and mutation analysis, in
        addition to facilitating reproducible research.
Authors@R: c( 
    person("Lydia", "King", ,"l.king18@universityofgalway.ie",
      c("aut", "cre"), c(ORCID = "0000-0002-0696-9811")
    ),
    person("Marcel", "Ramos", ,"marcel.ramos@roswellpark.org", "ctb")
  )
License: MIT + file LICENSE
Imports: DT, fontawesome, shinycssloaders, cBioPortalData, shinyjs,
        reshape2, RColorBrewer, survival, survminer, stats,
        compareGroups, rpart, partykit, DescTools, car, rstatix,
        fabricatr, shinylogs, magrittr
Depends: R (>= 4.3.0), shiny, shinydashboard, shinydashboardPlus,
        dashboardthemes, shinyWidgets, shinymeta, tidyverse,
        operator.tools, maftools
Suggests: BiocStyle, knitr, rmarkdown
biocViews: Software, ShinyApps, Survival, GUI
BugReports: https://github.com/Lydia-King/GNOSIS/issues
URL: https://github.com/Lydia-King/GNOSIS/
Video: https://doi.org/10.5281/zenodo.5788544
VignetteBuilder: knitr
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Config/pak/sysreqs: libcairo2-dev cmake libfontconfig1-dev
        libfreetype6-dev libfribidi-dev libgmp3-dev make
        libharfbuzz-dev libbz2-dev libicu-dev libjpeg-dev liblzma-dev
        libpng-dev libtiff-dev libwebp-dev libxml2-dev libmpfr-dev
        libssl-dev libx11-dev xz-utils zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 15:26:22 UTC
RemoteUrl: https://github.com/bioc/GNOSIS
RemoteRef: RELEASE_3_22
RemoteSha: 6153684bde89d0a5ccf409266d5c020cba294948
NeedsCompilation: no
Packaged: 2026-03-03 09:25:57 UTC; root
Author: Lydia King [aut, cre] (ORCID: <https://orcid.org/0000-0002-0696-9811>),
  Marcel Ramos [ctb]
Maintainer: Lydia King <l.king18@universityofgalway.ie>
Built: R 4.5.2; ; 2026-03-03 09:28:36 UTC; windows
