Package: GWAS.BAYES
Type: Package
Title: Bayesian analysis of Gaussian GWAS data
Version: 1.20.0
Authors@R: 
  c(person(given = "Jacob",
           family = "Williams",
           role = c("aut", "cre"),
           email = "jwilliams@vt.edu",
           comment = c(ORCID = "0000-0002-6425-1365")),
    person(given = "Marco",
           family = "Ferreira",
           role = "aut",
           comment = c(ORCID = "0000-0002-4705-5661")),
    person(given = "Tieming",
           family = "Ji",
           role = "aut"))
Description: This package is built to perform GWAS analysis using
        Bayesian techniques. Currently, GWAS.BAYES has functionality
        for the implementation of BICOSS (Williams, J., Ferreira, M.
        A., and Ji, T. (2022). BICOSS: Bayesian iterative conditional
        stochastic search for GWAS. BMC Bioinformatics), BGWAS
        (Williams, J., Xu, S., Ferreira, M. A.. (2023) "BGWAS: Bayesian
        variable selection in linear mixed models with nonlocal priors
        for genome-wide association studies." BMC Bioinformatics), and
        GINA. All methods currently are for the analysis of Gaussian
        phenotypes The research related to this package was supported
        in part by National Science Foundation awards DMS 1853549, DMS
        1853556, and DMS 2054173.
License: GPL-3 + file LICENSE
Encoding: UTF-8
LazyData: true
biocViews: Bayesian, AssayDomain, SNP, GenomeWideAssociation
Imports: GA (>= 3.2), caret (>= 6.0-86), memoise (>= 1.1.0), Matrix (>=
        1.2-18), limma (>= 3.54.0), stats (>= 4.2.2), MASS (>=
        7.3-58.1)
Depends: R (>= 4.3.0)
Suggests: BiocStyle, knitr, rmarkdown, formatR, rrBLUP
VignetteBuilder: knitr
RoxygenNote: 7.2.3
Config/pak/sysreqs: libicu-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 15:04:22 UTC
RemoteUrl: https://github.com/bioc/GWAS.BAYES
RemoteRef: RELEASE_3_22
RemoteSha: 2463904403befb6cbbe462fe6bd8eb7301442fb7
NeedsCompilation: no
Packaged: 2026-03-01 09:16:39 UTC; root
Author: Jacob Williams [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-6425-1365>),
  Marco Ferreira [aut] (ORCID: <https://orcid.org/0000-0002-4705-5661>),
  Tieming Ji [aut]
Maintainer: Jacob Williams <jwilliams@vt.edu>
Built: R 4.5.2; ; 2026-03-01 09:18:01 UTC; windows
