Package: GenomicDistributions
Version: 1.18.0
Date: 2025-04-23
Title: GenomicDistributions: fast analysis of genomic intervals with
        Bioconductor
Description: If you have a set of genomic ranges, this package can help
        you with visualization and comparison. It produces several
        kinds of plots, for example: Chromosome distribution plots,
        which visualize how your regions are distributed over
        chromosomes; feature distance distribution plots, which
        visualizes how your regions are distributed relative to a
        feature of interest, like Transcription Start Sites (TSSs);
        genomic partition plots, which visualize how your regions
        overlap given genomic features such as promoters, introns,
        exons, or intergenic regions. It also makes it easy to compare
        one set of ranges to another.
Authors@R: c(
	  person("Kristyna", "Kupkova", role=c("aut", "cre"),
    email = "kristynakupkova@gmail.com"),
    person("Jose", "Verdezoto", role="aut"),
    person("Tessa", "Danehy", role="aut"),
    person("John", "Lawson", role="aut"),
    person("Jose", "Verdezoto", role="aut"),
    person("Michal", "Stolarczyk", role="aut"),
    person("Jason", "Smith", role="aut"),
    person("Bingjie", "Xue", role="aut"),
    person("Sophia", "Rogers", role="aut"),
    person("John", "Stubbs", role="aut"),
    person(given=c("Nathan", "C."), "Sheffield",
    email = "nathan@code.databio.org", role="aut"))
Depends: R (>= 4.0), IRanges, GenomicRanges
Imports: data.table, ggplot2, reshape2, methods, utils, Biostrings,
        plyr, dplyr, scales, broom, GenomeInfoDb, stats
Suggests: AnnotationFilter, rtracklayer, testthat, knitr, BiocStyle,
        rmarkdown, GenomicDistributionsData
Enhances: BSgenome, extrafont, ensembldb, GenomicFeatures
LazyData: true
VignetteBuilder: knitr
License: BSD_2_clause + file LICENSE
biocViews: Software, GenomeAnnotation, GenomeAssembly,
        DataRepresentation, Sequencing, Coverage, FunctionalGenomics,
        Visualization
RoxygenNote: 7.3.2
URL: http://code.databio.org/GenomicDistributions
BugReports: http://github.com/databio/GenomicDistributions
Encoding: UTF-8
Config/pak/sysreqs: libicu-dev libssl-dev zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 15:05:22 UTC
RemoteUrl: https://github.com/bioc/GenomicDistributions
RemoteRef: RELEASE_3_22
RemoteSha: 7d87c4e17f387a534736da969bc6aff69ac2fb83
NeedsCompilation: no
Packaged: 2026-02-27 08:09:16 UTC; root
Author: Kristyna Kupkova [aut, cre],
  Jose Verdezoto [aut],
  Tessa Danehy [aut],
  John Lawson [aut],
  Jose Verdezoto [aut],
  Michal Stolarczyk [aut],
  Jason Smith [aut],
  Bingjie Xue [aut],
  Sophia Rogers [aut],
  John Stubbs [aut],
  Nathan C. Sheffield [aut]
Maintainer: Kristyna Kupkova <kristynakupkova@gmail.com>
Built: R 4.5.2; ; 2026-02-27 08:11:37 UTC; windows
