Package: HiContacts
Title: Analysing cool files in R with HiContacts
Version: 1.12.0
Date: 2022-08-16
Authors@R: 
    c(person(given = "Jacques",
           family = "Serizay",
           role = c("aut", "cre"),
           email = "jacquesserizay@gmail.com",
           comment = c(ORCID = "0000-0002-4295-0624")))
Description: HiContacts provides a collection of tools to analyse and
        visualize Hi-C datasets imported in R by HiCExperiment.
License: MIT + file LICENSE
URL: https://github.com/js2264/HiContacts
BugReports: https://github.com/js2264/HiContacts/issues
Depends: R (>= 4.2), HiCExperiment
Imports: InteractionSet, SummarizedExperiment, GenomicRanges, IRanges,
        GenomeInfoDb, S4Vectors, methods, BiocGenerics, BiocIO,
        BiocParallel, RSpectra, Matrix, tibble, tidyr, dplyr, readr,
        stringr, ggplot2, ggrastr, scales, stats, utils
Suggests: HiContactsData, rtracklayer, GenomicFeatures, Biostrings,
        BSgenome.Scerevisiae.UCSC.sacCer3, WGCNA, Rfast, terra,
        patchwork, testthat (>= 3.0.0), BiocStyle, knitr, rmarkdown
biocViews: HiC, DNA3DStructure
Encoding: UTF-8
VignetteBuilder: knitr
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Config/pak/sysreqs: libcairo2-dev libfontconfig1-dev libfreetype6-dev
        libfribidi-dev libharfbuzz-dev libicu-dev libjpeg-dev
        libpng-dev libtiff-dev libwebp-dev libssl-dev libx11-dev
        zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 15:18:51 UTC
RemoteUrl: https://github.com/bioc/HiContacts
RemoteRef: RELEASE_3_22
RemoteSha: 16d84998b54cbcf210d5f8db761c675a430258a3
NeedsCompilation: no
Packaged: 2026-02-23 09:44:27 UTC; root
Author: Jacques Serizay [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-4295-0624>)
Maintainer: Jacques Serizay <jacquesserizay@gmail.com>
Built: R 4.5.2; ; 2026-02-23 09:47:09 UTC; windows
