Package: INSPEcT
Type: Package
Title: Modeling RNA synthesis, processing and degradation with RNA-seq
        data
Version: 1.40.0
Date: 2025-07-22
Author: Stefano de Pretis
Maintainer: Stefano de Pretis <ste.depo@gmail.com>, Mattia Furlan
 <Mattia.Furlan@iit.it>
Description: INSPEcT (INference of Synthesis, Processing and
        dEgradation rates from Transcriptomic data) RNA-seq data in
        time-course experiments or steady-state conditions, with or
        without the support of nascent RNA data.
License: GPL-2
Depends: R (>= 3.6), methods, Biobase, BiocParallel
Imports: pROC, deSolve, rootSolve, KernSmooth, readxl, GenomicFeatures,
        GenomicRanges, IRanges, BiocGenerics, GenomicAlignments,
        Rsamtools, S4Vectors, Seqinfo, DESeq2, plgem, rtracklayer,
        SummarizedExperiment, TxDb.Mmusculus.UCSC.mm9.knownGene, shiny
Suggests: BiocStyle, knitr, rmarkdown
VignetteBuilder: knitr
biocViews: Sequencing, RNASeq, GeneRegulation, TimeCourse,
        SystemsBiology
NeedsCompilation: no
RoxygenNote: 7.1.1
Config/pak/sysreqs: make libbz2-dev liblzma-dev libpng-dev libxml2-dev
        libssl-dev xz-utils zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:26:37 UTC
RemoteUrl: https://github.com/bioc/INSPEcT
RemoteRef: RELEASE_3_22
RemoteSha: c9f5ce1ca7a4bc58944da738df70d7ae28d75bf7
Packaged: 2026-03-04 08:36:28 UTC; root
Built: R 4.5.2; ; 2026-03-04 08:39:37 UTC; windows
