# Individual-Specific ceLl typE referencing Tool

## Documentation for package ‘ISLET’ version 1.12.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

caseEst | ISLET reference estimation results extraction
ctrlEst | ISLET reference estimation results extraction
dataPrep | Data preparation step utility function before using ISLET
dataPrepSlope | Data preparation function specifically for slope effect testing
GE600 | ISLET deconvolution example raw input data
GE600age | ISLET example datasets for slope variable testing in csDE
GE600age_se | ISLET example datasets for slope variable testing in csDE
GE600_se | ISLET deconvolution example raw input data
imply | _*imply*_: _*imp*_roving ce_*l*_l-t_*y*_pe deconvolution using personalized reference
implyDataPrep | Data preparation step utility function before using imply
isletSolve | Solving individual-specific and cell-type-specific reference panels
isletTest | Testing for cell-type-specific Differential Expression (csDE) genes