Package: MEAL
Title: Perform methylation analysis
Version: 1.40.0
Authors@R: c(person("Carlos", "Ruiz-Arenas", , "carlos.ruiz@isglobal.org", role = c("aut", "cre")),
  person("Juan R.", "Gonzalez", ,"juanr.gonzalez@isglobal.org", role = "aut"))
Maintainer: Xavier Escribà Montagut <xavier.escriba@isglobal.org>
Description: Package to integrate methylation and expression data. It
        can also perform methylation or expression analysis alone.
        Several plotting functionalities are included as well as a new
        region analysis based on redundancy analysis. Effect of SNPs on
        a region can also be estimated.
Depends: R (>= 3.6.0), Biobase, MultiDataSet
License: Artistic-2.0
biocViews: DNAMethylation, Microarray, Software, WholeGenome
Imports: GenomicRanges, limma, vegan, BiocGenerics, minfi, IRanges,
        S4Vectors, methods, parallel, ggplot2 (>= 2.0.0), permute,
        Gviz, missMethyl, isva, SummarizedExperiment, SmartSVA,
        graphics, stats, utils, matrixStats
Suggests: testthat, IlluminaHumanMethylationEPICanno.ilm10b2.hg19,
        IlluminaHumanMethylation450kanno.ilmn12.hg19, knitr, minfiData,
        BiocStyle, rmarkdown, brgedata
VignetteBuilder: knitr
RoxygenNote: 7.1.1
Encoding: UTF-8
Config/pak/sysreqs: make libbz2-dev libicu-dev libjpeg-dev liblzma-dev
        libpng-dev libxml2-dev libssl-dev libx11-dev xz-utils
        zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:28:05 UTC
RemoteUrl: https://github.com/bioc/MEAL
RemoteRef: RELEASE_3_22
RemoteSha: 0882535a9760e5851ab52e8cb911fe4eca7c6769
NeedsCompilation: no
Packaged: 2026-03-04 09:30:15 UTC; root
Author: Carlos Ruiz-Arenas [aut, cre],
  Juan R. Gonzalez [aut]
Built: R 4.5.2; ; 2026-03-04 09:49:49 UTC; windows
