Package: PIPETS
Title: Poisson Identification of PEaks from Term-Seq data
Version: 1.6.0
Authors@R: 
    person("Quinlan", "Furumo", email="furumo@bc.edu", role = c("aut", "cre"), comment = c(ORCID = "0000-0003-4486-302X"))
Description: PIPETS provides statistically robust analysis for
        3'-seq/term-seq data. It utilizes a sliding window approach to
        apply a Poisson Distribution test to identify genomic positions
        with termination read coverage that is significantly higher
        than the surrounding signal. PIPETS then condenses proximal
        signal and produces strand specific results that contain all
        significant termination peaks.
License: GPL-3
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Depends: R (>= 4.4.0)
Imports: dplyr, utils, stats, GenomicRanges, BiocGenerics, methods
Suggests: BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0)
VignetteBuilder: knitr
BugReports: https://github.com/qfurumo/PIPETS/issues
URL: https://github.com/qfurumo/PIPETS
biocViews: Sequencing, Transcription, GeneRegulation, PeakDetection,
        Genetics, Transcriptomics, Coverage
Config/testthat/edition: 3
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 15:27:41 UTC
RemoteUrl: https://github.com/bioc/PIPETS
RemoteRef: RELEASE_3_22
RemoteSha: 6b112c5df9490a34b61f9572fc6398df6f71de5c
NeedsCompilation: no
Packaged: 2026-02-24 09:11:35 UTC; root
Author: Quinlan Furumo [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-4486-302X>)
Maintainer: Quinlan Furumo <furumo@bc.edu>
Built: R 4.5.2; ; 2026-02-24 09:12:48 UTC; windows
