DeaSet-class            DeaSet class
Enrich-class            Enrich class
Lyme_GSE63085           Example RNAseq dataset [Human]
RegenrichSet            RegenrichSet object creator
RegenrichSet-class      RegenrichSet class
Score-class             Score class
TFs                     Human gene regulators
TopNetwork-class        TopNetwork class
dim,TopNetwork-method   dimention of 'TopNetwork' object
getResultsNames         Inference the name of results of DESeq analysis
                        by a formula (or model matrix) and sample
                        information
head,Score-method       head or tail of Score object
newDeaSet               DeaSet object creator
newTopNetwork           TopNetwork object creator
plotOrders              Compare the orders of two vectors
plotRegTarExpr          Plot regulator and its targets expression
plotSoftPower           Plot soft power for WGCNA analysis
plot_Enrich             Plot results of FET/GSEA enrichment analysis
print.Score             Print Score object
regenrich_diffExpr      Differential expression analysis step
regenrich_enrich        Enrichment analysis step
regenrich_network       Regulator-target network inference step
regenrich_rankScore     Regulator scoring and ranking
results_expr            Result accessor functions
show,DeaSet-method      methods of generic function "show"
