Package: SpatialDecon
Title: Deconvolution of mixed cells from spatial and/or bulk gene
        expression data
Version: 1.20.1
Authors@R: c(person("Maddy", "Griswold", email = "mgriswold@nanostring.com", role = c("cre", "aut")),
             person("Patrick", "Danaher", email = "pdanaher@nanostring.com", role = c("aut")))
Description: Using spatial or bulk gene expression data, estimates
        abundance of mixed cell types within each observation. Based on
        "Advances in mixed cell deconvolution enable quantification of
        cell types in spatial transcriptomic data", Danaher (2022).
        Designed for use with the NanoString GeoMx platform, but
        applicable to any gene expression data.
Depends: R (>= 4.0.0)
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: TRUE
RoxygenNote: 7.2.3
Imports: grDevices, stats, utils, graphics, SeuratObject, Biobase,
        GeomxTools, repmis, methods, Matrix, logNormReg (>= 0.4)
Suggests: testthat, knitr, rmarkdown, qpdf, Seurat
biocViews: ImmunoOncology, FeatureExtraction, GeneExpression,
        Transcriptomics, Spatial
VignetteBuilder: knitr
BugReports: https://github.com/Nanostring-Biostats/SpatialDecon/issues
Config/pak/sysreqs: libcairo2-dev cmake libfontconfig1-dev
        libfreetype6-dev make libicu-dev libpng-dev libssl-dev
        zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2026-02-05 19:08:12 UTC
RemoteUrl: https://github.com/bioc/SpatialDecon
RemoteRef: RELEASE_3_22
RemoteSha: f44c6390b3c12ea70b2008c7c2672aecea85a4ee
NeedsCompilation: no
Packaged: 2026-03-08 04:29:08 UTC; root
Author: Maddy Griswold [cre, aut],
  Patrick Danaher [aut]
Maintainer: Maddy Griswold <mgriswold@nanostring.com>
Built: R 4.5.2; ; 2026-03-08 04:31:17 UTC; windows
