# Shiny app for canonical and back splicing analysis (i.e. circular and mRNA analysis)

## Documentation for package ‘Ularcirc’ version 1.28.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

BSJ_details | BSJ_details This function returns details of a BSJ string and returns a list of coordinates. Can accept two different formats, Ularcirc or generic.
bsj_fastq_generate | bsj_fastq_generate
bsj_to_circRNA_sequence | bsj_to_circRNA_sequence
chimericFilters | chimericFilters
chimericStats | chimericStats
circSequence | circSequence This function returns pre-defined full length circRNA sequences.
Compatible_Annotation_DBs | Compatible_Annotation_DBs
FilterChimericJuncs | FilterChimericJuncs
FilterChimeric_Ularcirc | Wrapper function for Ularcirc shiny app which expects a list of objects to be returned
Junction_Sequence_from_Genome | Grab_BS_Junc_Sequence
loadSTAR_chimeric | loadSTAR_chimeric
load_miRBase_fasta | load_miRBase_fasta This function extracts species specific mirbase sequences as a Biostrings RNAstringset.
miR_binding_site_Analysis | miR_binding_site_Analysis This function analyses a genomic (RNA or DNA) sequence for matching miRNA seed sequences.
plot_AllJunctions | plot_AllJunctions
RAD_score | RAD_score
SelectUniqueJunctions | SelectUniqueJunctions
sequence_from_exon_coords | sequence_from_exon_coords
Ularcirc | Ularcirc