Package: bacon
Type: Package
Title: Controlling bias and inflation in association studies using the
        empirical null distribution
Version: 1.38.0
Authors@R: c(person("Maarten", "van Iterson",
        email="mviterson@gmail.com", role="cre"), person("Erik", "van
        Zwet", role="ctb"))
Author: Maarten van Iterson [aut, cre], Erik van Zwet [ctb]
Maintainer: Maarten van Iterson <mviterson@gmail.com>
Description: Bacon can be used to remove inflation and bias often
        observed in epigenome- and transcriptome-wide association
        studies. To this end bacon constructs an empirical null
        distribution using a Gibbs Sampling algorithm by fitting a
        three-component normal mixture on z-scores.
License: GPL (>= 2)
Encoding: UTF-8
Depends: R (>= 3.3), methods, stats, ggplot2, graphics, BiocParallel,
        ellipse
Suggests: BiocStyle, knitr, rmarkdown, testthat, roxygen2
biocViews: ImmunoOncology, StatisticalMethod, Bayesian, Regression,
        GenomeWideAssociation, Transcriptomics, RNASeq,
        MethylationArray, BatchEffect, MultipleComparison
RoxygenNote: 7.3.1
Collate: 'BaconClass.R' 'BaconMethods.R' 'bacon.R' 'normmixture.R'
VignetteBuilder: knitr
NeedsCompilation: yes
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:30:45 UTC
RemoteUrl: https://github.com/bioc/bacon
RemoteRef: RELEASE_3_22
RemoteSha: 7b49c5b2357d036b4c5f48d760d991a366c5975f
Packaged: 2026-02-20 06:06:04 UTC; root
Built: R 4.5.2; x86_64-w64-mingw32; 2026-02-20 06:07:22 UTC; windows
Archs: x64
