Package: dyebias
Title: The GASSCO method for correcting for slide-dependent
        gene-specific dye bias
Version: 1.70.0
Date: 2 March 2016
Author: Philip Lijnzaad and Thanasis Margaritis
Description: Many two-colour hybridizations suffer from a dye bias that
        is both gene-specific and slide-specific. The former depends on
        the content of the nucleotide used for labeling; the latter
        depends on the labeling percentage. The slide-dependency was
        hitherto not recognized, and made addressing the artefact
        impossible.  Given a reasonable number of dye-swapped pairs of
        hybridizations, or of same vs. same hybridizations, both the
        gene- and slide-biases can be estimated and corrected using the
        GASSCO method (Margaritis et al., Mol. Sys. Biol. 5:266 (2009),
        doi:10.1038/msb.2009.21)
Maintainer: Philip Lijnzaad <plijnzaad@gmail.com>
License: GPL-3
Depends: R (>= 1.4.1), marray, Biobase
Suggests: limma, convert, GEOquery, dyebiasexamples, methods
URL: http://www.holstegelab.nl/publications/margaritis_lijnzaad
biocViews: Microarray, TwoChannel, QualityControl, Preprocessing
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:02:35 UTC
RemoteUrl: https://github.com/bioc/dyebias
RemoteRef: RELEASE_3_22
RemoteSha: 7a5438a23c38927ab53e97357a048906314d63cb
NeedsCompilation: no
Packaged: 2026-03-01 08:48:59 UTC; root
Built: R 4.5.2; ; 2026-03-01 08:50:40 UTC; windows
