Package: eudysbiome
Type: Package
Title: Cartesian plot and contingency test on 16S Microbial data
Version: 1.40.0
Date: 2016-05-19
Author: Xiaoyuan Zhou, Christine Nardini
Maintainer: Xiaoyuan Zhou <zhouxiaoyuan@picb.ac.cn>
Description: eudysbiome a package that permits to annotate the
        differential genera as harmful/harmless based on their ability
        to contribute to host diseases (as indicated in literature) or
        unknown based on their ambiguous genus classification. Further,
        the package statistically measures the eubiotic (harmless
        genera increase or harmful genera decrease) or
        dysbiotic(harmless genera decrease or harmful genera increase)
        impact of a given treatment or environmental change on the
        (gut-intestinal, GI) microbiome in comparison to the microbiome
        of the reference condition.
Depends: R (>= 3.1.0)
Imports: plyr, Rsamtools, R.utils, Biostrings
License: GPL-2
LazyData: TRUE
RoxygenNote: 5.0.1
Config/pak/sysreqs: libbz2-dev liblzma-dev xz-utils zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:27:08 UTC
RemoteUrl: https://github.com/bioc/eudysbiome
RemoteRef: RELEASE_3_22
RemoteSha: 7979b5bc267761be6106d8e4a19b46ef9e19edc0
NeedsCompilation: no
Packaged: 2026-03-05 08:08:03 UTC; root
Built: R 4.5.2; ; 2026-03-05 08:09:33 UTC; windows
