Package: fastreeR
Type: Package
Title: Phylogenetic, Distance and Other Calculations on VCF and Fasta
        Files
Version: 2.0.0
Backend: 2.2.0
biocViews: Phylogenetics, Metagenomics, Clustering
Authors@R: 
    c(person(given = "Anestis",
             family = "Gkanogiannis",
             role = c("aut", "cre"),
             email = "anestis@gkanogiannis.com",
             comment = c(ORCID = "0000-0002-6441-0688"))
    )
Description: Calculate distances, build phylogenetic trees or perform
        hierarchical clustering between the samples of a VCF or FASTA
        file. Functions are implemented in Java-11 and called via
        rJava. Parallel implementation that operates directly on the
        VCF or FASTA file for fast execution.
License: GPL-3
Encoding: UTF-8
Language: en-US
Depends: R (>= 4.4)
Imports: ape, data.table, dynamicTreeCut, methods, R.utils, rJava,
        stats, stringr, utils
SystemRequirements: Java (>= 11)
RoxygenNote: 7.3.2
URL: https://github.com/gkanogiannis/fastreeR,
        https://github.com/gkanogiannis/BioInfoJava-Utils
BugReports: https://github.com/gkanogiannis/fastreeR/issues
Suggests: BiocFileCache, BiocStyle, ggtree, graphics, knitr, memuse,
        rmarkdown, spelling, testthat (>= 3.0.0)
VignetteBuilder: knitr
Config/testthat/edition: 3
Config/pak/sysreqs: make default-jdk libicu-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 15:15:37 UTC
RemoteUrl: https://github.com/bioc/fastreeR
RemoteRef: RELEASE_3_22
RemoteSha: 04a52eb6ac44ea6dc6ef5b729aa2ed342b1ac37f
NeedsCompilation: no
Packaged: 2026-02-23 08:33:30 UTC; root
Author: Anestis Gkanogiannis [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-6441-0688>)
Maintainer: Anestis Gkanogiannis <anestis@gkanogiannis.com>
Built: R 4.5.2; ; 2026-02-23 08:34:48 UTC; windows
