# Visualization for flow cytometry

## Documentation for package ‘flowViz’ version 1.74.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

flowViz-package | Visualization for flow cytometry
.process_flowFrame_overlay | convert a single flowFrame or a list of flowFrames to a list of flowSet
.process_overlay_flowSet | extract the respective flowFrame from each flowSet based on the given sampleName
addName | Add gate names to a flowViz plot.
addName-method | Add gate names to a flowViz plot.
addName-methods | Add gate names to a flowViz plot.
contour | Contour plots for flow data
contour-method | Contour plots for flow data
contour-methods | Contour plots for flow data
densityplot | One-dimensional density/histogram plots for flow data
densityplot-method | One-dimensional density/histogram plots for flow data
ecdfplot | Method implementing Lattice ECDF plots for flow data
ecdfplot-method | Method implementing Lattice ECDF plots for flow data
flowPlot | Standard Plots for Flow Cytometry Data
flowPlot-method | Standard Plots for Flow Cytometry Data
flowViz | Visualization for flow cytometry
flowViz.par.get | Query and set session-wide graphical parameter defaults.
flowViz.par.set | Query and set session-wide graphical parameter defaults.
glines | Drawing filter boundaries
glines-method | Drawing filter boundaries
glines-methods | Drawing filter boundaries
glpoints | Adding points within a gate to a plot
glpoints-method | Adding points within a gate to a plot
glpoints-methods | Adding points within a gate to a plot
glpolygon | Drawing filter regions
glpolygon-method | Drawing filter regions
glpolygon-methods | Drawing filter regions
gpoints | Adding points within a gate to a plot
gpoints-method | Adding points within a gate to a plot
gpoints-methods | Adding points within a gate to a plot
gpolygon | Drawing filter regions
gpolygon-method | Drawing filter regions
gpolygon-methods | Drawing filter regions
histogram-method | One-dimensional density/histogram plots for flow data
lattice-methods | Methods implementing Lattice displays for flow data
levelplot-method | Methods implementing Lattice displays for flow data
panel.densityplot.flowset.stack | One-dimensional density/histogram plots for flow data
panel.ecdfplot.flowset | Method implementing Lattice ECDF plots for flow data
panel.splom.flowframe | Method implementing Lattice scatter plot matrices for flow data.
panel.xyplot.flowframe | Methods implementing Lattice xyplots for flow data.
panel.xyplot.flowframe.time | Methods implementing Lattice xyplots for flow data.
panel.xyplot.flowset | Methods implementing Lattice xyplots for flow data.
parallel-method | Methods implementing Lattice displays for flow data
plot | Very basic plotting of flowFrames
plot-method | Very basic plotting of flowFrames
prepanel.densityplot.flowset.stack | One-dimensional density/histogram plots for flow data
prepanel.ecdfplot.flowset | Method implementing Lattice ECDF plots for flow data
prepanel.xyplot.flowframe | Methods implementing Lattice xyplots for flow data.
prepanel.xyplot.flowframe.time | Methods implementing Lattice xyplots for flow data.
prepanel.xyplot.flowset | Methods implementing Lattice xyplots for flow data.
qqmath-method | Methods implementing Lattice displays for flow data
splom | Method implementing Lattice scatter plot matrices for flow data.
splom-method | Method implementing Lattice scatter plot matrices for flow data.
timeLinePlot | Plot channel values against time
timelineplot | Plot channel values against time
timeLinePlot-method | Plot channel values against time
xyplot | Methods implementing Lattice xyplots for flow data.
xyplot-method | Methods implementing Lattice xyplots for flow data.