Package: iCOBRA
Type: Package
Title: Comparison and Visualization of Ranking and Assignment Methods
Version: 1.38.0
Date: 2025-07-17
Authors@R: c(person(given = "Charlotte", family = "Soneson", 
    role = c("aut", "cre"),
    email = "charlottesoneson@gmail.com",
    comment = c(ORCID = "0000-0003-3833-2169")))
Description: This package provides functions for calculation and
        visualization of performance metrics for evaluation of ranking
        and binary classification (assignment) methods. Various types
        of performance plots can be generated programmatically. The
        package also contains a shiny application for interactive
        exploration of results.
License: GPL (>=2)
LazyData: TRUE
Collate: 'AllGenerics.R' 'COBRAData.R' 'COBRAPerformance.R'
        'COBRAPlot.R' 'calculate_performance.R' 'cobradata_example.R'
        'cobradata_example_sval.R' 'helpers_general.R' 'plot_methods.R'
        'printHead.R' 'shiny.R'
Depends: R (>= 4.4.0)
Imports: shiny (>= 0.9.1.9008), shinydashboard, shinyBS, reshape2,
        ggplot2 (>= 3.4.0), scales, ROCR, dplyr, DT, limma, methods,
        UpSetR, utils, rlang
Suggests: knitr, markdown, rmarkdown, testthat
VignetteBuilder: knitr
biocViews: Classification, Visualization
Encoding: UTF-8
RoxygenNote: 7.3.2
URL: https://github.com/csoneson/iCOBRA
BugReports: https://github.com/csoneson/iCOBRA/issues
Config/pak/sysreqs: make libicu-dev zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:28:52 UTC
RemoteUrl: https://github.com/bioc/iCOBRA
RemoteRef: RELEASE_3_22
RemoteSha: 60e06fcb471005632b1db49d8c2a14ea808aa68a
NeedsCompilation: no
Packaged: 2026-02-23 08:49:39 UTC; root
Author: Charlotte Soneson [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-3833-2169>)
Maintainer: Charlotte Soneson <charlottesoneson@gmail.com>
Built: R 4.5.2; ; 2026-02-23 08:51:02 UTC; windows
