Type: Package
Package: maftools
Title: Summarize, Analyze and Visualize MAF Files
Version: 2.26.0
Date: 2021-04-30
Authors@R: 
    person(given = "Anand",
           family = "Mayakonda",
           role = c("aut", "cre"),
           email = "anand_mt@hotmail.com",
           comment = c(ORCID = "0000-0003-1162-687X"))
Maintainer: Anand Mayakonda <anand_mt@hotmail.com>
Description: Analyze and visualize Mutation Annotation Format (MAF)
        files from large scale sequencing studies. This package
        provides various functions to perform most commonly used
        analyses in cancer genomics and to create feature rich
        customizable visualzations with minimal effort.
License: MIT + file LICENSE
URL: https://github.com/PoisonAlien/maftools
BugReports: https://github.com/PoisonAlien/maftools/issues
Depends: R (>= 4.1.0)
Imports: data.table, grDevices, methods, RColorBrewer, Rhtslib,
        survival, DNAcopy, pheatmap
Suggests: berryFunctions, Biostrings, BSgenome,
        BSgenome.Hsapiens.UCSC.hg19, GenomicRanges, IRanges, knitr,
        mclust, MultiAssayExperiment, NMF, R.utils, RaggedExperiment,
        rmarkdown, S4Vectors
LinkingTo: Rhtslib
VignetteBuilder: knitr
biocViews: DataRepresentation, DNASeq, Visualization, DriverMutation,
        VariantAnnotation, FeatureExtraction, Classification,
        SomaticMutation, Sequencing, FunctionalGenomics, Survival
Encoding: UTF-8
NeedsCompilation: yes
Packaged: 2026-02-25 09:34:42 UTC; root
RoxygenNote: 7.3.1
SystemRequirements: GNU make, curl
Config/pak/sysreqs: make libbz2-dev liblzma-dev xz-utils zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:33:17 UTC
RemoteUrl: https://github.com/bioc/maftools
RemoteRef: RELEASE_3_22
RemoteSha: 9e83363e07890e3a9de437f687acf0b8519b902a
Author: Anand Mayakonda [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-1162-687X>)
Built: R 4.5.2; x86_64-w64-mingw32; 2026-02-25 09:38:05 UTC; windows
Archs: x64
