Package: magpie
Type: Package
Title: MeRIP-Seq data Analysis for Genomic Power Investigation and
        Evaluation
Version: 1.10.0
Authors@R: c(person(given = "Daoyu",
                    family = "Duan",
                    role = c("aut", "cre"),
                    email = "dxd429@case.edu"),
             person(given = "Zhenxing",
                    family = "Guo",
                    role = c("aut"),
                    email = "guozhenxing@cuhk.edu.cn"))
Description: This package aims to perform power analysis for the
        MeRIP-seq study. It calculates FDR, FDC, power, and precision
        under various study design parameters, including but not
        limited to sample size, sequencing depth, and testing method.
        It can also output results into .xlsx files or produce
        corresponding figures of choice.
License: MIT + file LICENSE
Encoding: UTF-8
biocViews: Epitranscriptomics, DifferentialMethylation, Sequencing,
        RNASeq, Software
RoxygenNote: 7.2.1
Imports: utils, rtracklayer, Matrix, matrixStats, stats, S4Vectors,
        methods, graphics, GenomicRanges, GenomicFeatures, IRanges,
        Rsamtools, AnnotationDbi, aod, BiocParallel, DESeq2, openxlsx,
        RColorBrewer, reshape2, TRESS
Depends: R (>= 4.3.0)
Suggests: knitr, rmarkdown, kableExtra, RUnit, TBX20BamSubset,
        BiocGenerics, BiocStyle
VignetteBuilder: knitr
URL: https://github.com/dxd429/magpie
BugReports: https://github.com/dxd429/magpie/issues
Config/pak/sysreqs: make libbz2-dev libicu-dev liblzma-dev libpng-dev
        libxml2-dev libssl-dev xz-utils zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 15:21:48 UTC
RemoteUrl: https://github.com/bioc/magpie
RemoteRef: RELEASE_3_22
RemoteSha: 0afc3bfd2a4ebc424ed3d2806ab878d3eec55d85
NeedsCompilation: no
Packaged: 2026-02-23 08:27:16 UTC; root
Author: Daoyu Duan [aut, cre],
  Zhenxing Guo [aut]
Maintainer: Daoyu Duan <dxd429@case.edu>
Built: R 4.5.2; ; 2026-02-23 08:31:28 UTC; windows
