Package: msgbsR
Type: Package
Title: msgbsR: methylation sensitive genotyping by sequencing (MS-GBS)
        R functions
Version: 1.34.0
Date: 2025-07-24
Author: Benjamin Mayne
Maintainer: Benjamin Mayne <benjamin.mayne@adelaide.edu.au>
Depends: R (>= 3.5.0), GenomicRanges, methods
Imports: BSgenome, easyRNASeq, edgeR, GenomicAlignments,
        GenomicFeatures, Seqinfo, ggbio, ggplot2, IRanges, parallel,
        plyr, Rsamtools, R.utils, stats, SummarizedExperiment,
        S4Vectors, utils
Suggests: roxygen2, BSgenome.Rnorvegicus.UCSC.rn6
biocViews: ImmunoOncology, DifferentialMethylation, DataImport,
        Epigenetics, MethylSeq
Description: Pipeline for the anaysis of a MS-GBS experiment.
License: GPL-2
LazyLoad: yes
Collate: 'msgbsR.R' 'rawCounts.R' 'checkCuts.R' 'plotCounts.R'
        'diffMeth.R' 'plotCircos.R'
RoxygenNote: 5.0.1
Config/pak/sysreqs: make libbz2-dev libicu-dev libjpeg-dev liblzma-dev
        libpng-dev libxml2-dev libssl-dev xz-utils zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:38:42 UTC
RemoteUrl: https://github.com/bioc/msgbsR
RemoteRef: RELEASE_3_22
RemoteSha: 1016b01c1e2747d0dffadba68831608a8edaf9aa
NeedsCompilation: no
Packaged: 2026-03-05 07:57:27 UTC; root
Built: R 4.5.2; ; 2026-03-05 08:00:54 UTC; windows
