Package: projectR
Type: Package
Title: Functions for the projection of weights from PCA, CoGAPS, NMF,
        correlation, and clustering
Version: 1.26.0
Author: Gaurav Sharma, Charles Shin, Jared Slosberg, Loyal Goff,
        Genevieve Stein-O'Brien
Authors@R: c(
    person("Gaurav", "Sharma", role = c("aut")),
    person("Charles", "Shin", role = c("aut")),
    person("Jared", "Slosberg", role = c("aut")),
    person("Loyal", "Goff", role = c("aut")),
    person("Ryan", "Palaganas", role = c("aut")),
    person("Genevieve", "Stein-O'Brien", role = c("aut", "cre" ), email = "gsteinobrien@gmail.com")
    )
Description: Functions for the projection of data into the spaces
        defined by PCA, CoGAPS, NMF, correlation, and clustering.
License: GPL (==2)
Imports: SingleCellExperiment, methods, cluster, stats, limma, NMF,
        ROCR, ggalluvial, RColorBrewer, dplyr, fgsea, reshape2,
        viridis, scales, Matrix, MatrixModels, msigdbr, ggplot2,
        cowplot, ggrepel, umap, tsne
Suggests: BiocStyle, CoGAPS, gridExtra, grid, testthat, devtools,
        knitr, rmarkdown, ComplexHeatmap, gplots, SeuratObject
LazyData: TRUE
LazyDataCompression: gzip
RoxygenNote: 7.3.2
Encoding: UTF-8
VignetteBuilder: knitr
biocViews: FunctionalPrediction, GeneRegulation, BiologicalQuestion,
        Software
BugReports: https://support.bioconductor.org/t/projectR/
URL: https://github.com/genesofeve/projectR/
Depends: R (>= 4.0.0)
Config/pak/sysreqs: libicu-dev libpng-dev libssl-dev python3 zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:50:52 UTC
RemoteUrl: https://github.com/bioc/projectR
RemoteRef: RELEASE_3_22
RemoteSha: 8ac1c218e505001a84e2e98912dfbc2c3cb0068c
NeedsCompilation: no
Packaged: 2026-03-04 08:05:29 UTC; root
Maintainer: Genevieve Stein-O'Brien <gsteinobrien@gmail.com>
Built: R 4.5.2; ; 2026-03-04 08:07:32 UTC; windows
