Package: qmtools
Title: Quantitative Metabolomics Data Processing Tools
Version: 1.14.0
Authors@R: c(
    person(given = "Jaehyun",
           family = "Joo",
           role = c("aut", "cre"),
           email = "jaehyunjoo@outlook.com"),
    person(given = "Blanca",
           family = "Himes",
           role = c("aut"),
           email = "bhimes@pennmedicine.upenn.edu")
           )
Description: The qmtools (quantitative metabolomics tools) package
        provides basic tools for processing quantitative metabolomics
        data with the standard SummarizedExperiment class. This
        includes functions for imputation, normalization, feature
        filtering, feature clustering, dimension-reduction, and
        visualization to help users prepare data for statistical
        analysis. This package also offers a convenient way to compute
        empirical Bayes statistics for which metabolic features are
        different between two sets of study samples. Several functions
        in this package could also be used in other types of omics
        data.
License: GPL-3
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
biocViews: Metabolomics, Preprocessing, Normalization,
        DimensionReduction, MassSpectrometry
Imports: rlang, ggplot2, patchwork, heatmaply, methods, MsCoreUtils,
        stats, igraph, VIM, scales, grDevices, graphics, limma
Suggests: Rtsne, missForest, vsn, pcaMethods, pls, MsFeatures, impute,
        imputeLCMD, nlme, testthat (>= 3.0.0), BiocStyle, knitr,
        rmarkdown
Depends: R (>= 4.2.0), SummarizedExperiment
BugReports: https://github.com/HimesGroup/qmtools/issues
URL: https://github.com/HimesGroup/qmtools
Config/testthat/edition: 3
VignetteBuilder: knitr
LazyData: false
Config/pak/sysreqs: cmake libglpk-dev make libmagick++-dev gsfonts
        libicu-dev libxml2-dev libssl-dev zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 15:16:09 UTC
RemoteUrl: https://github.com/bioc/qmtools
RemoteRef: RELEASE_3_22
RemoteSha: b38de258f328bc6677f1a91d5db76a5ace2a2a77
NeedsCompilation: no
Packaged: 2026-03-18 08:57:40 UTC; root
Author: Jaehyun Joo [aut, cre],
  Blanca Himes [aut]
Maintainer: Jaehyun Joo <jaehyunjoo@outlook.com>
Built: R 4.5.3; ; 2026-03-18 08:59:25 UTC; windows
