Package: scHiCcompare
Title: Differential Analysis of Single-cell Hi-C Data
Version: 1.2.0
Authors@R: c(
    person(given = "My", family = "Nguyen",
           email = "hamy.12398@gmail.com",
           role = c("aut", "cre"),
           comment = c(ORCID = "0009-0003-1118-7085")),
    person(given = "Mikhail",
           family = "Dozmorov",
           role = c("aut"),
           email = "mikhail.dozmorov@gmail.com",
           comment = c(ORCID = "0000-0002-0086-8358")))
Description: This package provides functions for differential chromatin
        interaction analysis between two single-cell Hi-C data groups.
        It includes tools for imputation, normalization, and
        differential analysis of chromatin interactions. The package
        implements pooling techniques for imputation and offers methods
        to normalize and test for differential interactions across
        single-cell Hi-C datasets.
Imports: grDevices, graphics, stats, utils, dplyr, ggplot2, gtools,
        HiCcompare, lattice, mclust, mice, miceadds, ranger, rstatix,
        tidyr, rlang, data.table, BiocParallel
Suggests: knitr, rmarkdown, testthat, BiocStyle, DT, gridExtra
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: false
RoxygenNote: 7.3.2
Depends: R (>= 4.4.0)
VignetteBuilder: knitr
biocViews: Software, SingleCell, HiC, Sequencing, Normalization
BugReports: https://github.com/dozmorovlab/ScHiCcompare/issues
URL: https://github.com/dozmorovlab/ScHiCcompare
Config/pak/sysreqs: cmake make libicu-dev libssl-dev libx11-dev
        zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 15:36:12 UTC
RemoteUrl: https://github.com/bioc/scHiCcompare
RemoteRef: RELEASE_3_22
RemoteSha: bb3c0956e80da2809964b21d608b02fadb89ecb8
NeedsCompilation: no
Packaged: 2026-03-12 08:40:49 UTC; root
Author: My Nguyen [aut, cre] (ORCID: <https://orcid.org/0009-0003-1118-7085>),
  Mikhail Dozmorov [aut] (ORCID: <https://orcid.org/0000-0002-0086-8358>)
Maintainer: My Nguyen <hamy.12398@gmail.com>
Built: R 4.5.2; ; 2026-03-12 08:43:06 UTC; windows
