Package: scRNAseqApp
Title: A single-cell RNAseq Shiny app-package
Version: 1.10.0
Authors@R: 
    c(person(given = "Jianhong",
             family = "Ou",
             role = c("aut", "cre"),
             email = "jou@morgridge.org",
             comment=c(ORCID="0000-0002-8652-2488")))
Description: The scRNAseqApp is a Shiny app package designed for
        interactive visualization of single-cell data. It is an
        enhanced version derived from the ShinyCell, repackaged to
        accommodate multiple datasets. The app enables users to
        visualize data containing various types of information
        simultaneously, facilitating comprehensive analysis.
        Additionally, it includes a user management system to regulate
        database accessibility for different users.
License: GPL-3
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
VignetteBuilder: knitr
biocViews: Visualization, SingleCell, RNASeq
Depends: R (>= 4.3.0)
Imports: bibtex, bslib, circlize, ComplexHeatmap, colourpicker,
        data.table, DBI, DT, fs, GenomicRanges, GenomeInfoDb, ggdendro,
        ggforce, ggplot2, ggrepel, ggridges, grDevices, grid,
        gridExtra, htmltools, IRanges, jsonlite, Matrix, magrittr,
        methods, patchwork, plotly, RColorBrewer, RefManageR, reshape2,
        rhdf5, Rsamtools, RSQLite, rtracklayer, S4Vectors, scales,
        scrypt, Seurat, SeuratObject, shiny, shinyhelper, shinymanager,
        slingshot, SingleCellExperiment, sortable, stats, tools, xfun,
        xml2, utils
Suggests: rmarkdown, knitr, testthat, BiocStyle, shinytest2
Enhances: celldex, future, SingleR, SummarizedExperiment, tricycle
URL: https://github.com/jianhong/scRNAseqApp
BugReports: https://github.com/jianhong/scRNAseqApp/issues
Config/pak/sysreqs: libfontconfig1-dev libfreetype6-dev libglpk-dev
        make libbz2-dev libicu-dev liblzma-dev libpng-dev libxml2-dev
        libssl-dev perl python3 xz-utils zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 15:20:39 UTC
RemoteUrl: https://github.com/bioc/scRNAseqApp
RemoteRef: RELEASE_3_22
RemoteSha: 799772d721206189fd2cfef37afcbdeec539201f
NeedsCompilation: no
Packaged: 2026-03-05 07:59:19 UTC; root
Author: Jianhong Ou [aut, cre] (ORCID: <https://orcid.org/0000-0002-8652-2488>)
Maintainer: Jianhong Ou <jou@morgridge.org>
Built: R 4.5.2; ; 2026-03-05 08:02:43 UTC; windows
