Package: simpleSeg
Type: Package
Title: A package to perform simple cell segmentation
Description: Image segmentation is the process of identifying the
        borders of individual objects (in this case cells) within an
        image. This allows for the features of cells such as marker
        expression and morphology to be extracted, stored and analysed.
        simpleSeg provides functionality for user friendly, watershed
        based segmentation on multiplexed cellular images in R based on
        the intensity of user specified protein marker channels.
        simpleSeg can also be used for the normalization of single cell
        data obtained from multiple images.
Version: 1.12.0
Date: 2022-04-21
Authors@R: c(person("Nicolas", "Canete", email = "nicolas.canete@sydney.edu.au",
    role = c("aut")),
    person("Alexander", "Nicholls", email = "alexanderwnicholls@gmail.com",
    role = c("aut")),
    person("Ellis", "Patrick", email = "ellis.patrick@sydney.edu.au",
    role = c("aut", "cre")))
VignetteBuilder: knitr
Encoding: UTF-8
biocViews: Classification, Survival, SingleCell, Normalization, Spatial
Imports: BiocParallel, EBImage, terra, stats, spatstat.geom, S4Vectors,
        grDevices, SummarizedExperiment, methods, cytomapper
Suggests: BiocStyle, testthat (>= 3.0.0), knitr, ggplot2
License: GPL-3
RoxygenNote: 7.2.3
Config/testthat/edition: 3
BugReports: https://github.com/SydneyBioX/simpleSeg/issues
URL: https://sydneybiox.github.io/simpleSeg/
        https://github.com/SydneyBioX/simpleSeg
Config/pak/sysreqs: libfftw3-dev libfontconfig1-dev libfreetype6-dev
        libfribidi-dev libgdal-dev gdal-bin libgeos-dev make
        libharfbuzz-dev libmagick++-dev gsfonts libicu-dev libjpeg-dev
        libpng-dev libtiff-dev libssl-dev libproj-dev libsqlite3-dev
        zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 15:19:44 UTC
RemoteUrl: https://github.com/bioc/simpleSeg
RemoteRef: RELEASE_3_22
RemoteSha: 2b63ec0ff0a8dac133b1a6215df270cad3e609bc
NeedsCompilation: no
Packaged: 2026-03-05 07:29:11 UTC; root
Author: Nicolas Canete [aut],
  Alexander Nicholls [aut],
  Ellis Patrick [aut, cre]
Maintainer: Ellis Patrick <ellis.patrick@sydney.edu.au>
Depends: R (>= 3.5.0)
Built: R 4.5.2; ; 2026-03-05 07:31:24 UTC; windows
