Package: SeqSQC
Title: A bioconductor package for sample quality check with next
        generation sequencing data
Version: 1.33.0
Authors@R: person("Qian", "Liu", email = "qliu7@buffalo.edu", role = c("aut", "cre"))
Description: The SeqSQC is designed to identify problematic samples in
        NGS data, including samples with gender mismatch,
        contamination, cryptic relatedness, and population outlier.
biocViews: Experiment Data, Homo_sapiens_Data, Sequencing Data,
        Project1000genomes, Genome
Depends: R (>= 3.4), ExperimentHub (>= 1.3.7), SNPRelate (>= 1.10.2)
License: GPL-3
Encoding: UTF-8
URL: https://github.com/Liubuntu/SeqSQC
BugReports: https://github.com/Liubuntu/SeqSQC/issues
RoxygenNote: 7.3.1
VignetteBuilder: knitr
Imports: e1071, GenomicRanges, gdsfmt, ggplot2, GGally, IRanges,
        methods, plotly, RColorBrewer, reshape2, rmarkdown, S4Vectors,
        stats, utils
Suggests: BiocStyle, knitr, testthat
Config/pak/sysreqs: make libicu-dev libpng-dev libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 14:41:52 UTC
RemoteUrl: https://github.com/bioc/SeqSQC
RemoteRef: HEAD
RemoteSha: 1bf7b5e1dee4c4dfb71a0775cd9d2694e150d0fe
NeedsCompilation: no
Packaged: 2026-02-21 06:57:43 UTC; root
Author: Qian Liu [aut, cre]
Maintainer: Qian Liu <qliu7@buffalo.edu>
Built: R 4.6.0; ; 2026-02-21 06:59:17 UTC; windows
