a322061aa30145f1a0606875a5a0a088 *DESCRIPTION
d61c8125bd972b15b0f9b312b0912812 *NAMESPACE
4b048a5463d52035bfae3193e91508b6 *R/add.noise.R
36502f86b8845b2272ea9ff94cbd96e2 *R/apply.filter.R
5455e5df6c0c3b79c36df44f6fc6c38b *R/balance.R
aaf3fc226b3937b02e5a3518c2c2a2b2 *R/bn.calculation.R
97b9ab99159205c1f13f83590326592c *R/bn.calculationS.R
8dcdcb8374c684688c9355dd86711c8a *R/bn.module.R
26848d4751e705537819b39d2e5bf750 *R/calculate.beta.R
9c1b9b0856ef766a71a18fb9adaac5e7 *R/check.nas.R
a626a9222bea6f1f27f0eee259c31f76 *R/check.pigengene.input.R
e479b2a1e8b22d140558a3e364ba03b1 *R/combine.networks.R
fe8a8de8148b03f4d8c53fbfcc955e78 *R/combinedPath.R
c2d2bdbff5a77626af0e7ca453d42437 *R/combinedStrength.R
1e7df0d377f48a8c3d8f7cc3625411cf *R/compact.tree.R
a5584688ec9936cda3f030497ea2b24c *R/compute.pigengene.R
cb0fee0ded6e6382346dd71184566b06 *R/consensus.R
670f2dcd3b6fafbc51d89f7b75326eeb *R/consensus.thresh.R
fd4a875d83c30ef7e47b875a5ff6b12f *R/dcor.matrix.R
40ed7b175c5e7cebca17dd628fe6089f *R/determine.modules.R
d45c080f753a4729de0952d8fec3edef *R/draw.bn.R
36a7e62a7f22f5f672f9f39dfdae6ff2 *R/draw.bnS.R
32f913120e96e66ea9723b88ab7d4a9f *R/draw.cor.R
f8174ee483597eaffbea486707fccd97 *R/draw.cor.cond.R
68b02c43a6dc10c0a0bcbb95bb74fbeb *R/draw.improvement.R
3b456b973d3b58f14a204c9c51835f9a *R/draw.module.sizes.R
381d395e0850b3c054c16a92856087e8 *R/draw.scores.R
6f3a22f6e85ea0a26cec2939e10712f9 *R/dummyMaker.R
6516c244ff6415270767a7271c6bef58 *R/enforce.blk.R
f5f5894791c8fe5b64dfceeb4790a5a5 *R/gene.mapping.R
e8c50af02746c1e25800b10218f1f16e *R/get.combined.file.R
ae174433fb480891d3df257b70410c83 *R/get.consensus.files.R
81897e6cba9812045095cca61845976d *R/get.enriched.pw.R
e66bace5a12fe2d776717a6af7afb5b7 *R/get.fitted.leaf.R
ab662643acaf9e70228eadfcfd045c8a *R/get.genes.R
eed35273177e068d510c53501c74adad *R/get.module.data.file.R
e94d1fc4ff4c5911ac7c0a08cd8df5b8 *R/get.sorted.members.R
562894779c87c893b0c35304c33cfb65 *R/get.used.features.R
c09f9e9ee7d7f0bc48423b804c714526 *R/getALLRuns.R
0d2168eca0ff1a8cb8c59c59057ee091 *R/getBN.R
12576ca35c4bb7c8fc3cf6cffe867136 *R/hu.mouse.R
c40e662b8b279a02096ec27d505069d1 *R/indFileName.R
8d81e5a661d2c9586342b1d1dd72b797 *R/learn.bn.R
ac5baa3a6498427fd3c42fc0e896c334 *R/load.if.R
c1b063b280287fd8878f9c8a15231443 *R/make.bn.input.R
16bc0e25942b095ed09a04bea03fb70b *R/make.decision.tree.R
1f10f5ab9c873e4b6e072afbf788d35f *R/make.filter.R
1ebdd33ca843efa3fd2de8fd3fa09db2 *R/make.membership.queue.R
26376013b4b8b3ea2d8da2e2f229461f *R/message.if.R
a953cf265f9eca1d6ed23c0e764d6d29 *R/module.heatmap.R
ea5e976b364dd42c05972aa0b9d6f038 *R/mtrim.R
73ee468c5ec660d50d8ae773bddedd44 *R/noise.analysis.R
4639141b5585d4a74161699e733fbc9b *R/one.step.pigengene.R
f3e4bf43ff35a2fb583e909b1d06f9e9 *R/pheatmap.type.R
f38afeb03d2cc2cdb8c291115959dbb9 *R/plot.pigengene.R
2b01b883fa1819b5f1192858e999eb9f *R/preds.at.R
781b28fc6df2f7087de3a67d8893039f *R/project.eigen.R
aadd829749e603ccfa483fc9c8a96e49 *R/pvalues.manova.R
e2fd43a75d079c03627f38648dd5192b *R/rename.nodes.R
ca4779d25b3fbd42aa40954a47d3cf72 *R/repeat.data.R
cdf4971858e7da94f8a15a8f3c0661cd *R/sample.network.R
06323002a3d0141ae95b304fe60346e3 *R/save.if.R
9032e7a63f9e5a4e28bda600f78af49e *R/sbatch.R
dda3742243e4c78fb3772a996c4185bc *R/scoreCandidates.R
d66f99cfecf3f3990a91624d3917a92d *R/type2char.R
f838486723fa1faf457080de9ef34011 *R/unique.gene.names.R
82b419aebb87a78b6e39012c4d80eb0a *R/versrem.R
2e416bb1ace173fe3827db5b249b925f *R/welch.pvalue.R
d105f869217fc468eb58a93fe618531b *R/wgcna.one.step.R
98c6c70782543b5552c4812bbc2859c0 *R/what.is.in.R
0a962bbce9fb88452c7b046410b61595 *R/which.cluster.R
4d2cf42cb3fc86fcbfb4dbf8560a3d42 *build/vignette.rds
9043514b7a8eb45b6f77b5e9dbd78bed *data/aml.RData
ca1e74a8e8d35c1469f8e0560046e6d5 *data/datalist
f7b2d3a870e6c953e3be36a2b8900703 *data/eigengenes33.RData
1cd9303339cfcd4de8a9ff346d8636af *data/mds.RData
e8a90683e6ae5e88478b97492b10de9a *data/pigengene.RData
f6959056cd48671a018348c6e351d8d5 *inst/CITATION
e3994a613497a9d07e5164f6b3652842 *inst/NEWS.Rd
362e4d4cf078c3c3389f3276165ac45d *inst/doc/Pigengene_inference.R
4cb05bd878ae1b09c69ff4a89f4619f5 *inst/doc/Pigengene_inference.Rnw
84af580eba6917b1cdb7f51069220c75 *inst/doc/Pigengene_inference.pdf
5a51025338cbaae59a92543d679f9fa6 *inst/script/bn.calculation.job.R
af141fb17f92043c1e52e33ff9701c6f *man/Pigengene-package.Rd
086d95b4a27a2d9f68fe248db6b37486 *man/aml.Rd
301c4ffd18e5a1a5047a8924724a0aaf *man/apply.filter.Rd
15072acd18fb307a653b95bf1d1c4fda *man/balance.Rd
e7435020615a76f6738020c2d7e7e87f *man/calculate.beta.Rd
2f01ddb1113432fe6662a5599d6ef513 *man/check.nas.Rd
64d0a5ed1d7a6bfa9d7aca835777340d *man/check.pigengene.input.Rd
49d98a65cc735fcee542a0a410b1c254 *man/combine.networks.Rd
16e3992bc297afbfda775c8a3c627c39 *man/compact.tree.Rd
dab4f3119d2d4944111c1bbcda13488d *man/compute.pigengene.Rd
105d0a5446b777e0793f5875deb3f401 *man/dcor.matrix.Rd
cebbef2e5544600626f8bf1069bb1c6b *man/determine.modules.Rd
a6bba0d055ad6eb697d8fbb3fd1ccc39 *man/draw.bn.Rd
77c3d869fa9c556c329ac5167dc36c28 *man/eigengenes33.Rd
4db541f8d36e0b367422d84f7b169213 *man/gene.mapping.Rd
4fcbbeb2e67a04836a911f0cab7f2a21 *man/get.enriched.pw.Rd
b37dddc898e2c3641f0db31d0f63c555 *man/get.fitted.leaf.Rd
a86d293e57d9cb680f10f1e61a894f0b *man/get.genes.Rd
ec1500371fd52c9d2da4d718e0494401 *man/get.used.features.Rd
f0999a9044ec6f58791052079edfa400 *man/learn.bn.Rd
8a34042e3d34bc3b71c3b23be496804c *man/make.decision.tree.Rd
20a51fcc6c6edcd0a5da48c687bb5e2b *man/make.filter.Rd
7c4a7bc6afd5638f4ffbc4e5b1ef8034 *man/mds.Rd
2c3c6363ded6def5dd597ab4b4fbd265 *man/message.if.Rd
fe8e1f1a8a2448c521b190b8c7a53987 *man/module.heatmap.Rd
71dd0a3269f97c2f1613218b60972840 *man/one.step.pigengene.Rd
82ea1497ee0ea1a8e96859ede8a70f8c *man/pheatmap.type.Rd
7762630fbde956489d3797af233f8ef4 *man/pigengene-class.Rd
1e85210f9602370b684e527b0f8403fe *man/pigengene.Rd
220165351c7b16088fe1c5b1d94f63e2 *man/plot.pigengene.Rd
df21ab7e2b0a71ee4595bac2add53ae8 *man/preds.at.Rd
7d65cb55088d515e0733c8470ab25a82 *man/project.eigen.Rd
7d5d73c8a762af4c249f87dc406be347 *man/pvalues.manova.Rd
21a60c6534bcba0e65fdd49389e64d1e *man/save.if.Rd
dbd1a2ae2d93d4a259a86ea210ef5feb *man/wgcna.one.step.Rd
4cb05bd878ae1b09c69ff4a89f4619f5 *vignettes/Pigengene_inference.Rnw
bf2fdd2c2cf53be4b1c80615cfaeb888 *vignettes/pigengene.bib
