00e7de955af3ea2707977a569b5415e6 *DESCRIPTION
d175250eea2d18c05fc62c9ad2fcb6e9 *NAMESPACE
fd793621edfec786c65171930ba17bb0 *R/AlignmentsExperimentSet-class.R
c7b9a3740dfbae0076b04e4d9ec2ff72 *R/RcppExports.R
2ff85a55b02baf89f0a08e7d576f59b3 *R/amplican.R
0b1fc83a4c49c776ae5513b9be8cf7aa *R/amplicanAlign.R
91efdf13b2a002fb8f61d35e8aa4d4d1 *R/amplicanFilter.R
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ed4e95770a4bd9805d74144fa701605f *R/amplicanReport.R
f1a3c059c2a6acfad88c0039ac9b5c8a *R/amplicanSummarize.R
d4a584ea87e8886804a2b7985276cc49 *R/ggforce_bezier.R
f02b80e66b7213426665651620f76d5e *R/globals.R
da791bb2dc63a12f8460bb0e91b580ca *R/helpers_alignment.R
2399b90ff3d628568bf235e84e789fe5 *R/helpers_directory.R
0f6d171f3a3998fd5857cfdfdfdadbae *R/helpers_filters.R
433b0b331a3a4b08284464961ef7a4d3 *R/helpers_general.R
203b07cd7e459c6908ac1fa926c5b111 *R/helpers_plots.R
217fa2262acd9bfee7c9fda128d8c470 *R/helpers_rmd.R
839d63fa7a4e7b1340989dd8a9c06028 *R/helpers_warnings.R
453045ae1335c6b3437a69ad4f5cae7c *README.md
61c8716e94451dd5da257d2c7a086c60 *build/vignette.rds
e04a04da596bd025e6c0230ed1fcdb6f *inst/CITATION
a73def78df278b80f8975ff20e6a7e7d *inst/NEWS
ca5863169eefef09e5cb3e4889ba3200 *inst/TODO
22c1153df9da5aa066349a91dc711272 *inst/doc/amplicanFAQ.Rmd
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ce8dccc37a47aeaf8db8bdb912e601a9 *inst/extdata/R2_002.fastq
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48fb9a4f3b7d856430aed7ba3ec2a796 *man/amplicanPipeline.Rd
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486d926a668a28c1472747e635eddbb8 *man/amplican_print_reads.Rd
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977f5b3d0e9ec7111b302baeec25afe8 *man/cigarsToEvents.Rd
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772ad06bf18be6eee0809df3e3044c85 *man/decode.Rd
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4f44d2219cd60edc8cc2bb85eb60336d *man/findEOP.Rd
195526fafa881bf32b47b0f8b8d73dd0 *man/findLQR.Rd
e90bf1bd184527b6ca1d3a12fe8bcc0d *man/findPD.Rd
606f28be115b3b65757102db597e0048 *man/flipRanges.Rd
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4a279664189939e76a2f52de0e5a5534 *man/fwdReads.Rd
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7128567783fddbb5c5e49fc23bf1d172 *man/get_right_primer.Rd
0c2e711a19e95bda50267194897ef6e3 *man/get_seq.Rd
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0d8935da5fd25813337c537da66b3b2a *man/is_hdr.Rd
ef8ce6aad73b96e8ccbd5d0c2c91b8bb *man/is_hdr_strict.Rd
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2bb2856a58eb0e9f8ad87d82752fea1a *man/plot_insertions.Rd
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984e26dda04b262ffbad4654a09e7e00 *man/unassignedData-set.Rd
9f572494519a384ca6a0b645e004224c *man/unassignedData.Rd
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0196bdd14d579cfc8330175dd1f8d27a *man/waffle.Rd
0f4dbe0f66b4e061bb44a9e3b4507b77 *man/writeAlignments.Rd
3f62c2f38dbd96f3cbc964a58345631b *src/RcppExports.cpp
5d1dc745394f636ee366fcd3eb267879 *src/bezier.cpp
20422cf7212cf396d54b0fadf1f7090e *tests/testthat.R
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679c70634fa746a69dc32e6aa065ec00 *vignettes/example_barcode_report.Rmd
8c818ebabd63fee3cbee5522dd972c02 *vignettes/example_group_report.Rmd
3053735495e4f4b0bc2795a6f75d9823 *vignettes/example_guide_report.Rmd
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657b7352c13fe03e8c933edeef3fcb3b *vignettes/example_index.Rmd
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12cbaa674f8ca638862d82a6b1b641dd *vignettes/figures/amplican_consensus_rules.png
302c86aafc5d24590137191d9411498c *vignettes/figures/indel_rate_vs_indel_size.png
