278c7438fb1260bac2e41e76003e357f *DESCRIPTION
66ba805303f19716e1add3baf3e1e6d4 *NAMESPACE
f62d11492e2c5bcde14951dd8f3fb07d *NEWS
1826fd70ad4dadec50eafb48654417ca *R/DA_ALDEx2.R
04dacb89fc40796489fde3fd81856f4d *R/DA_ANCOM.R
a87b1c584b4464cf979ecee4b9869f6b *R/DA_DESeq2.R
f1ecff1bd29247ae8a5d5b1adf0375bf *R/DA_MAST.R
62ab55e9730b6ff366e6e750117b00a6 *R/DA_Maaslin2.R
fa596e34da4746d1949ee0ba2062b60c *R/DA_Maaslin3.R
ff4131a36d2d966cd3a2e02b3d4b9bb8 *R/DA_NOISeq.R
13014f4088963caf769f812755d1ee41 *R/DA_Seurat.R
25897cc1154aa458e7d1637f0365acdf *R/DA_ZicoSeq.R
e14755f682f7c687c1ef99207924a85c *R/DA_basic.R
39d094a1bee3b332d302c320dd7d5e6b *R/DA_corncob.R
807f48caeecb999865eb0d9bf1d2a051 *R/DA_dearseq.R
b3b3b1605e2b068a868421d627194a58 *R/DA_edgeR.R
6865ab2eeaffaf8cd6f7cebc5d034d4e *R/DA_limma.R
1e5ed75507e164bb767d7b08a6d55c38 *R/DA_linda.R
d6af48001938c8779f0a60529c1248d9 *R/DA_metagenomeSeq.R
ff0d718df0cf07953c3651f677e6302e *R/DA_mixMC.R
a96951fcac0d38f69876b2677a39700c *R/GOF.R
592d5dc6bf199780ceb58f831951b394 *R/TIEC.R
d952dbadf60f53d0cd6905fc7cf303a3 *R/concordance.R
1ef03d0d713a3cd10ba5745c182ebd77 *R/enrichment.R
e004a535d2cef0693fc3bfd4e49e617a *R/fitDistribution.R
559f19b8a7fefa90785d3f7f7aaf7a66 *R/microbial_metabolism.R
c87e3c213511c0b298fbd8ae38444758 *R/norm_CSS.R
504545764289ec808d1de1f4a8b9bb1f *R/norm_DESeq2.R
08665c912a005f67d58ca327c0ced40a *R/norm_TSS.R
d4ef1a1bfc8ccb3e62d3223540cfaebe *R/norm_edgeR.R
fd34eea9d838d95d4424fbac2989f274 *R/plotConcordance.R
eb76c4ba2f49d9ed2101704d19c9483a *R/plotEnrichment.R
2b8de59ae662bab95260af6afc7bf516 *R/plotGOF.R
94efb25c2ab8ae147ace405439d0d94e *R/plotTIEC.R
5710aa58e9bcb4f8e0bf456a125f84cf *R/ps_plaque_16S.R
7c46522f0bbbadedfcc624da9aff7921 *R/ps_stool_16S.R
a463d65f6a2a3a134771969968a22825 *R/runDA.R
bab5609b17352081529b68c5bbd9dc8e *R/runNormalizations.R
9fd288e461f461be39018246851f2899 *R/utilities.R
14373507c6499c7b6242f02e513dda04 *R/weights_ZINB.R
b6c77a93c042eabc746c5e8dbc037784 *README.md
8d13d45d23abe977f1f23c63948e0568 *build/vignette.rds
ad70ccd750b45b439706d48588b0d2d1 *data/microbial_metabolism.RData
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b786bdcf57eea023c808214f713a9016 *data/ps_stool_16S.RData
c375ec199dcc54d1c47901b66af51f41 *inst/CITATION
81487ee1830f3dc18583a3de2d94ca41 *inst/doc/intro.R
0f8ee8f6f2e51752c35a7fa7b56f6ed8 *inst/doc/intro.Rmd
32bf75917845ecff5055ddb187783141 *inst/doc/intro.html
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086ff1263d8d20553cf084ff8bba3039 *man/DA_ALDEx2.Rd
ca4d3b9ef214c6e5d9f4ab7304915b0c *man/DA_ANCOM.Rd
ef5406a6af132d52dc885082f3e625d3 *man/DA_DESeq2.Rd
f8c683dedb39198b8df518e8e31921c6 *man/DA_MAST.Rd
a5f4163f062a5e435ef05246148b275c *man/DA_Maaslin2.Rd
3b060dad320960d6e8cc9450a9a8100d *man/DA_NOISeq.Rd
5624897e3c3a52c913da59b9f7485147 *man/DA_Seurat.Rd
6e405b1655b1ea7df8ecee866d683993 *man/DA_ZicoSeq.Rd
07f858913069e8bb2f7b2d88fc210bc2 *man/DA_basic.Rd
79be0ad54763e9330f34fdef533fe247 *man/DA_corncob.Rd
9ea9426f0bcb36d086bb4338871b00d1 *man/DA_dearseq.Rd
a702d9e22694105ac088f84a344630ea *man/DA_edgeR.Rd
484c055c3697173b87851f6f581983d2 *man/DA_limma.Rd
684963f3f5d4c157fca00d3863ef041b *man/DA_linda.Rd
23d436444fae66c233562d68d7e153e2 *man/DA_maaslin3.Rd
4e7870cbc2d3769a1feafafc24e02e83 *man/DA_metagenomeSeq.Rd
26be345b76e323e3869708e3809c534b *man/DA_mixMC.Rd
59dca4e0dddf65f34d074f1b7a317833 *man/RMSE.Rd
d8b692bb8452eda457834a361d95204a *man/addKnowledge.Rd
b8507925b9cb96422d2e80bffc19aa67 *man/areaCAT.Rd
b6c94d1dd018162b93e7d18cf57ed72c *man/checkNormalization.Rd
227b73a8783123fdfbfd784495cb18ee *man/createColors.Rd
69397184a776b4ff79603d74f6cc8f9f *man/createConcordance.Rd
ddc5257c8fd9540ca2ccccd590e66b30 *man/createEnrichment.Rd
b5f42bd0e61f9a8b88997612a5507049 *man/createMocks.Rd
91f0ba5e2e3e993be5eec1abd43e94c5 *man/createPositives.Rd
6088a9dd073212039be19c13658d3205 *man/createSplits.Rd
131714e7c6fb55eca848f67ac3d75c69 *man/createTIEC.Rd
2bc7a2b935211ee59f8689540c54466e *man/enrichmentTest.Rd
925b33faa5b5e580e0dd7e3a0fc38500 *man/extractDA.Rd
ba12a3e0bb120630093254247008a2f1 *man/extractStatistics.Rd
831f5fdbd3bb3ddc7ea8f1834b372641 *man/fitDM.Rd
9b8054ebfed800d18407275eabb4a467 *man/fitHURDLE.Rd
79918ff887f3c8cd55c9eec9d58d33be *man/fitModels.Rd
8f60a435e2435625ab70f2a118e61978 *man/fitNB.Rd
63d994220d4339688736418e0c3d56fb *man/fitZIG.Rd
6ce3c570f2bb024f893d2e50b276b730 *man/fitZINB.Rd
7fd7ee50de1df7b34f5e4b0cd4044fde *man/getDA.Rd
5d08ea4d384c8bf7d9870f08eec8e8fa *man/getPositives.Rd
7344299e4699f3ef63b1a3870b6b0b42 *man/getStatistics.Rd
e04011a7029a9930b92b9d34db5fa50a *man/get_counts_metadata.Rd
d1e1221189163ee81c247bb5312632ae *man/iterative_ordering.Rd
35f4ec2590fcc3670fc878249f747744 *man/meanDifferences.Rd
fa25b16d9b4dfebe6a49cd9c465e4ace *man/microbial_metabolism.Rd
af45b07c811584d40d520f496e420796 *man/norm_CSS.Rd
cd9f2a849cd84f10c4e5738704fc112d *man/norm_DESeq2.Rd
392317f6e8cad5fe50289a4554423056 *man/norm_TSS.Rd
8a1f9225a59a8eb867d389ca3cb0ee5f *man/norm_edgeR.Rd
90c584c9e741873d1fcc072675c8a007 *man/plotConcordance.Rd
80a5f3cf1b07617313f88ae214813885 *man/plotConcordanceDendrogram.Rd
adc71e6905cfc17b6eab4e19ecdfc3ed *man/plotConcordanceHeatmap.Rd
296c21d109e50fd089a0b82fe4ad30cd *man/plotContingency.Rd
44827051343ae375022691670169adcc *man/plotEnrichment.Rd
52788dd40b8b5b76c6e01730244a4d38 *man/plotFDR.Rd
d03f8ed7612aad70fd1a761876724f44 *man/plotFPR.Rd
5eab5a5e39d3d5c4ca3914ed53925121 *man/plotKS.Rd
bb430fde6a5ed87811816a82a2cbe048 *man/plotLogP.Rd
fa185daab5022209e6e88b1799f686d1 *man/plotMD.Rd
29acc28808e2ca22653e95abd2bbb244 *man/plotMutualFindings.Rd
79d0bbd7203409389e0ee1eb5f0046c4 *man/plotPositives.Rd
acf192c194a3f5e59cf28568f25568b5 *man/plotQQ.Rd
6e699e28caf439a0a6667ba8751f0788 *man/plotRMSE.Rd
f5ebaed87fe911e964816cf1e63e7f0c *man/prepareObserved.Rd
63e9fa24fb1517e71b32a5bfbc81b268 *man/ps_plaque_16S.Rd
c0d526f620da5f0d08fc91e8eac334fe *man/ps_stool_16S.Rd
4a1e1142c512d54e3be3452e6d193fea *man/runDA.Rd
39e1fc622d74722f7df84dafaab4879b *man/runMocks.Rd
d30223a36d8663e79f3f33c4f7915aff *man/runNormalizations.Rd
2047bbe5bc66169450b807613f711542 *man/runSplits.Rd
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5b46b97eb3abf13992b0bc2205e57fb2 *man/set_ALDEx2.Rd
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2e3048ba5a052d97e64c7d7b08f1817b *man/set_NOISeq.Rd
28f7ec04b272d39ec2d8ab8ac7f5d9f9 *man/set_Seurat.Rd
5887ac568ea59cae5a7f4e2dbaf8b29a *man/set_ZicoSeq.Rd
fa43ea5c595229eea1223ff03b17ca18 *man/set_basic.Rd
77542f8984b9507ebdfa8169dbd3ea2b *man/set_corncob.Rd
c7157cd04184f08366e624a9015efd4a *man/set_dearseq.Rd
69fb59e402b40fdb49c44aa33e1f3b0b *man/set_edgeR.Rd
4a9b94c601cfaab8996d572972d3afff *man/set_limma.Rd
b268c8e359e89565a8972b089bbce35a *man/set_linda.Rd
7834c34bf0977e7084b530e1f7723e37 *man/set_maaslin3.Rd
844ba28a48f8705df0401b0a74789619 *man/set_metagenomeSeq.Rd
51cf3197e60224bf3989905f120f9131 *man/set_mixMC.Rd
630885d73ec12a9051f4436325e305f9 *man/weights_ZINB.Rd
ddccf036c7fac4ac5fd2deef4754c70f *tests/testthat.R
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1366eca225fc69b2071e3e67cd03658b *tests/testthat/test_DA_ALDEx2.R
aa36298d726dfa5194ab125599ae6de0 *tests/testthat/test_DA_paired.R
bd2598ad38ad89b7696844f031c862d0 *tests/testthat/test_createMocks.R
833847fbcc113ad2e61d88f619dda04b *tests/testthat/test_createSplits.R
9c819cb4211d802a60330a65f8e82208 *tests/testthat/test_getStatistics_getDA_extractDA.R
5bd284c8f853899e85c1e9590022a911 *tests/testthat/test_get_counts_metadata.R
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ca3d0ca548f44e66940868b21880804d *tests/testthat/test_set_ALDEx2.R
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0f8ee8f6f2e51752c35a7fa7b56f6ed8 *vignettes/intro.Rmd
3a98e0769dd7ed2701f4da8f5eaf7274 *vignettes/norm_DA_structure.svg
