f0c7ae94d76dab117b0ebe13fe78c11e *DESCRIPTION
f4e1e377635a62a36cc373c19a82873b *NAMESPACE
6ea6b43c9ec7cc58250e34791012492f *NEWS.md
37dc259c92c2e99aa981511d2341a417 *R/cogeqc-package.R
97dba860b0c04a57e973d2e29f64163b *R/data.R
9d72b8f54feaec6aa12fa9773069bac6 *R/file_import.R
84aa940f940871c854338c13b78412e1 *R/genome_assembly.R
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81c773ca46c83a3026790448db052c89 *R/synteny.R
22087aae7c3a546df63fd82fa630d2b9 *R/utils.R
cccce04e0e3a651c0828c966f4ed8e87 *R/visualization.R
a39f767b0e13864befa276245b74875e *README.md
ec5fec232ce35ba90a4a2c0c6ab5b748 *build/vignette.rds
362288dcea9b8f849d3ec8491c8ec3d1 *data/batch_summary.rda
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531f6efb72d437caf8c151d4e7d02f91 *data/interpro_bol.rda
2809f83dcb3573a8da423ad0735a1dfd *data/og.rda
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7275f2474bf939ab5ef08154582b4d46 *inst/CITATION
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d5377f35834e610608c71092e17d4750 *inst/extdata/Hse_subset.fa
fc58f634229951bea49504e0f4eca689 *inst/extdata/Orthogroups.tsv.gz
13e9793bf30a91b142db35b58ba8be65 *inst/extdata/Orthogroups_SpeciesOverlaps.tsv
51e54849be1294ebfacc07229a14ee37 *inst/extdata/Statistics_PerSpecies.tsv
9892159726ab24b8498469ee7c0397de *inst/extdata/short_summary.txt
049547c10cd08d8655e8a7bbb9562b07 *inst/script/data_creation.md
514859920991c75e62d4a3e86ce8a2fb *man/assess_orthogroups.Rd
575b06c081825b128c3849955a53e432 *man/assess_synnet.Rd
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1a114a8a14597249ad9b12df7a9a4576 *man/list_busco_datasets.Rd
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23b5bb31fa2914dfb745e1c6d1487a6a *man/plot_genome_stats.Rd
dfb3004bc79f17c5a02513c1e57c6e23 *man/plot_og_overlap.Rd
3ed4f1a9c50f9a7932c4c3010b3ef488 *man/plot_og_sizes.Rd
3fbbed4e5c1ece8e2a3901141818de1c *man/plot_orthofinder_stats.Rd
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8ab083a9eacc467101d738570931fcf1 *man/plot_species_tree.Rd
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eff8a36b07b76dad8acff82462cb6923 *tests/testthat.R
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9bb4a4157af297dc9cbd334adf0f3e3e *tests/testthat/test-synteny.R
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96cb764079da6112a121dadfb19a4fee *tests/testthat/test-visualization.R
800facc01c5af318c1b5d0991772c5d4 *vignettes/vignette_01.bib
512c511c5b317160c31a28f7c825025b *vignettes/vignette_01_assessing_genome_assembly.Rmd
2c987ff49a573144e3ca759d99c9da4d *vignettes/vignette_02.bib
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75a8fa43b05d3aadee197809ddbe61de *vignettes/vignette_03.bib
fd63e05a96389c9cd83ee73be0ea0176 *vignettes/vignette_03_assessing_synteny.Rmd
