e4428a75e6372110a1e9478f17cb81d9 *DESCRIPTION
b6ba0c12f24fe4bf03de216895d9fdbf *LICENSE
586b40cb44540eab808e60f4a0b108fc *NAMESPACE
3082c67f743e4d77028ff32ce51b03fd *NEWS.md
3fb6a487cdb7df4507fdd096caaee3da *R/consensusConcordants.R
a283ea2b9c56a545e83b9efbb3a0eedd *R/drugfindR-package.R
0b56b501c423c8294b5580ab53cfeb71 *R/filterSignature.R
7fe920367fe766e68ae397aa42b8b2f8 *R/getConcordants.R
d40cdfe589a94ce5a05f06046b55da70 *R/getSignature.R
f9cfd331ba42ff3fa0e5446b384df495 *R/investigateSignature.R
caec7b4a433c977120c9464ed65bec22 *R/investigateTarget.R
87bfd43c82454ae6cf88cb431a1431fa *R/prepareSignature.R
9ef8f8bcba4eef552229903f34b11de6 *R/sysdata.rda
4acc6c43f4599ac7cb5f3eaa24202c78 *R/utilities.R
7790649485a285e0c218aa7f36903751 *README.md
30288614dffe35b61ad03968aaca4e2c *build/vignette.rds
8208bdb9c950d64aaa5ce6ddc2c253de *inst/WORDLIST
7d93211c8164ec5a8dec4b9d26b887d7 *inst/doc/drugfindR.R
166c99255b79693943e4a75680830f6f *inst/doc/drugfindR.Rmd
b6ef8e38fc9d6e1233ab7a26ba36a95a *inst/doc/drugfindR.html
02c73dff17e3edca015843cb03d37125 *inst/extdata/dCovid_diffexp.tsv
252a537548bf8bf199bfff7db63bd89d *inst/scripts/dCovid_diffexp.R
5564bbcec36eaba8ff17f32249b1f5fa *man/consensusConcordants.Rd
b1a9768243ef03f63a6b32d02043ec82 *man/dot-applyDirectionFilter.Rd
9f57688365a63aa3684ad11fd790a6ed *man/dot-applySimilarityCutoff.Rd
ab0fc87b54a6d2059832770021f2ed1c *man/dot-applyTargetRenaming.Rd
87f3c2fa1b446b3ef3b893269420c989 *man/dot-calculateAbsoluteThresholds.Rd
402c373e7dccb211d802837a68858421 *man/dot-calculateDoubleThreshold.Rd
13966ea8946e59ae1b1d35f117dd95df *man/dot-calculateProportionalThreshold.Rd
8263850ef02fc6de9a59f7e13859ac4d *man/dot-calculateSingleThreshold.Rd
fb4cd0bc7eb8c31dc7a09a988bc82a1f *man/dot-cleanupGetConcordants.Rd
176f01c1c29c97c126c4504545fdadf0 *man/dot-combineConcordantsData.Rd
e5f7cccfed3521735c790d395149833e *man/dot-computeConsensusFromSignature.Rd
f495fc6f024da795b2f08ee7d9a59063 *man/dot-createSignatureRequest.Rd
b9e4bb065ffb4984b9a002ae51de9d1d *man/dot-detectSignatureDirection.Rd
05f1bba5d7858ab04fcfed9b17252b2f *man/dot-executeIlincsRequest.Rd
4fda7180e6d7c42702add7216e87cbc4 *man/dot-executeSignatureRequest.Rd
4b2e479ce928ea1361b1b460a22c8dfc *man/dot-filterByCellLine.Rd
1a5d87dc97312238648b7d54d8ffc8aa *man/dot-generateIlincsRequest.Rd
e40d6830bfdab50cfdf5afb50e836c83 *man/dot-groupByTargetAndSelectMax.Rd
1e6aadd010def9c3f4ffcdcd0d936e10 *man/dot-ilincsBaseUrl.Rd
a23ecc194c6e9532a5ca6d33dcbcaf88 *man/dot-isValidSignatureId.Rd
3002f17b6914a7193c9d96ad40a4f50e *man/dot-loadMetadata.Rd
2aff758ea95414e616ec92fc3e11e69f *man/dot-mapToL1000WithPvalues.Rd
5b89e9c926b7c4820ccc4db2a4391111 *man/dot-mapToL1000WithoutPvalues.Rd
c8bc3792b857423fc7ee92dcb0538960 *man/dot-prepareSignatureFile.Rd
f9d039ee791b6a046b03fc4c3c0ecf8b *man/dot-processConsensusPipeline.Rd
ef62b96e82263bdc87259f872ad92376 *man/dot-processIlincsResponse.Rd
f1086b0b0c473f50d474501f3d6c737b *man/dot-processIlincsResponseEmpty.Rd
4b8cfa176d755e66ace32c80e0544cb0 *man/dot-processIlincsResponseError.Rd
496be1a73a50d20eea6fc833a4a5e43a *man/dot-processIlincsResponseSuccess.Rd
e1776a465fb9e91edee58c0000f9321e *man/dot-processSignatureResponse.Rd
d3e0bd9a9624c6de5814d29e7ac90663 *man/dot-processSignatureResponseError.Rd
5dd7a77eaf57f2eb72d181cc7301a106 *man/dot-processSuccessfulResponse.Rd
91ba8f5fe02f063b7c791443c2cf5f55 *man/dot-processToL1000Signature.Rd
f7a296126b68ade1360a824408d7755d *man/dot-returnLibrary.Rd
2a4b2eb67bdadcff9ee11af77cc90a51 *man/dot-returnResults.Rd
95eeec8cdeb05b7a0ff9c17c8626e8ed *man/dot-returnUserAgent.Rd
cd6813bba9f5a5765313b95f4a991876 *man/dot-selectAndOrderResults.Rd
a54828ddf0466e6771a9a21704984930 *man/dot-stopIfContainsMissingValues.Rd
ce1e4a8f6c5600e1b9a0ca341dd2b7fc *man/dot-stopIfInvalidColNames.Rd
531b45ee6d0f50147ff59338e265b68d *man/dot-validateConsensusConcordantsInput.Rd
e421091b343d864eac1a03662fafaea3 *man/dot-validateFilterSignatureInput.Rd
afb037168473b46331f0a82f603fca56 *man/dot-validateGetConcordantsInput.Rd
35c9effba2041c49f561afe871b0250d *man/dot-validateGetSignatureInput.Rd
6470d930afcff3286290d5498c232fa6 *man/dot-validateLibrary.Rd
3a48905888f497ff4593d681f4232de0 *man/dot-validatePrepareSignatureInput.Rd
dfa9f5039c8831ccbf399e375d3c1d0c *man/drugfindR-package.Rd
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986631d8c5f00c6cae7a667428b4b081 *man/filterSignature.Rd
f4c7ac8444d6cfc933074e7def664426 *man/getConcordants.Rd
1c584b0032f024bdace0338c99b668a7 *man/getSignature.Rd
b0e353fe5e9479e5d8dfc6d597e78c61 *man/investigateSignature.Rd
8d1f929f9ea4541b9d88beed0cf7c586 *man/investigateTarget.Rd
87dfc84dfc1be221274d808921824f47 *man/prepareSignature.Rd
f9d119e110828da205728db2d79a4f5f *man/stopIfInvalidLibraries.Rd
7fb57d090d7d973ab8032832b3286eed *man/stopIfInvalidSignature.Rd
341f3ff06c9cedb99c499ebfc45f8b78 *man/targetRename.Rd
930be3fd0df5df07b58500553e8a3939 *man/validateLibraries.Rd
111acc2619bc8ca997ca93ebf18f69b8 *tests/testthat.R
fc2cade7d9f62758e347deee175f71d4 *tests/testthat/fixtures/concordantsCp.RDS
9e5b55fd51e9c61fa3e2f50242109ba2 *tests/testthat/fixtures/concordantsCpPaired.RDS
83872acae8817874c90aa10cecc2de95 *tests/testthat/fixtures/concordantsOe.RDS
d51df74abca3238f693e7dd31d28e998 *tests/testthat/fixtures/emptyResponse.RDS
300189eb69b8a4c8d7b098895a1b472a *tests/testthat/fixtures/errorResponse400.RDS
a2c1ce3f74eef2d6807f35a916558fbc *tests/testthat/fixtures/errorResponse500.RDS
ad1c3c662a41a3088f28284c554f0461 *tests/testthat/fixtures/exampleRequest.RDS
661c15c9619300be3ac20c154cd36547 *tests/testthat/fixtures/exampleResponse.RDS
8f1763a792b9d505aed28d657d282fdb *tests/testthat/fixtures/exampleSignature.RDS
ef3eb7f03ef40d8b0df1496ca3b6e906 *tests/testthat/helpers.R
0afc86bb6dd797fddf1cd901c20da90c *tests/testthat/setup.R
8dcd699ebc61930dca5c1563df5435d9 *tests/testthat/test-consensusConcordants.R
9c100dd93d2f5c9160bf960d5b596ab7 *tests/testthat/test-filterSignature.R
c0dd15d4245b4158cc7b7965f5ddfd05 *tests/testthat/test-getConcordants.R
e7c231ace5e26a54514970b96d8f56da *tests/testthat/test-getSignature.R
bc46f547c8334eb3058ac88514bb5ad0 *tests/testthat/test-investigateSignature.R
119d1a02a308289a529590deb7e1b706 *tests/testthat/test-investigateTarget.R
338ad91b265c36ebb7470eefe330cc83 *tests/testthat/test-prepareSignature.R
344c1cd7c4bd2c79da5d0e6023b244bf *tests/testthat/test-utilities.R
166c99255b79693943e4a75680830f6f *vignettes/drugfindR.Rmd
