64391faa582832473dbe10aa950b75e2 *DESCRIPTION
1344ddfee00e7a4d72203e051160cc5b *NAMESPACE
7b50cc2b9c99bc1e23faadbff07c2d1c *R/EListFromLongFormatFile.R
ea4723ccb36a54ff9a01a43786713f14 *R/completeMomentsON.R
91de6aefd4be270b30d8a44a44098a03 *R/dpc.R
55d6fc8eac51d5c9802fd1c12d6f3cfc *R/dpcCN.R
392b3f41202d4d2cd615904f723445c5 *R/dpcDE.R
49d8fc4319dd517307adbd878e96bdb6 *R/dpcImputeHyperparam.R
c4eff4adef32f4066e7d452696013898 *R/dpcON.R
28f6cb2c7ec1892e0a9ef41642c9f6cd *R/dpcQuant.R
ba51dd5dd7641eaae70c25e4d7726441 *R/dpcQuantByRow.R
f1594b4aee19f69c950a2e42ffc210f4 *R/dpcquantHyperparam.R
ae4475b9c8b38b16785770907755f3dc *R/dztbinom.R
0afab75056bb084c0836b9718a1a3b54 *R/estimateDPCIntercept.R
1da1f45963067e1753bac1ed5ec3d3c7 *R/filterByDetection.R
af750edd3eb6bdc780ca877f84cd14e3 *R/filterCompoundProteins.R
e72c12e3c80db80acf14ed6ad6f67b76 *R/filterNonProteotypicPeptides.R
8b06f993e1b00c18f3f864e1cd685f5e *R/filterSingletonPeptides.R
23c9f134acdedb74a0c6f588ec5a562b *R/fitZTLogit.R
33e20fda32a5f543032854b18528cf54 *R/imputeByExpTilt.R
f17abcc025d1e723f429ff25837ecb17 *R/peptides2ProteinBFGS.R
59a93c25ec9f276ed6feb5567070a7cf *R/peptides2ProteinNewton.R
322bb7566b400f08414bd3bb131d5c51 *R/peptides2ProteinWithoutNAs.R
3563bf381675f8e8775b1ef7dc5d44e3 *R/peptides2Proteins.R
8b8031bd87f79fe89ecf494e5df024db *R/plotAveVsMis.R
a80dab6e1e49f6c6b751acc01e5fad9d *R/plotDPC.R
4e93c5dd4ccaa3eb94db679d70d9c2b1 *R/plotMDSUsingSEs.R
fcee318edac80b746e544b874ef7cf52 *R/plotPeptides.R
5d2e9cf84362cae5743eb7d0c93b539e *R/plotProtein.R
62f9f83a6b2dc48fed6539a5f14bf194 *R/proteinResVarFromCompletePeptideData.R
d45f328eb1b2d4ed07212ad56a3c807e *R/pztbinomSameSizeLogitPBothTails.R
3e49b715d99ea90737a66dac5eb5bf9a *R/readDIANN.R
52138c117e61fefcc59f8f2cc86f4c62 *R/readFragPipe.R
8fa61f10ef26a92e87a4b606bafd9c81 *R/readMaxQuant.R
f0ec04f8330df4ff78903dc28455a9c2 *R/readSpectronaut.R
ca58fa1fe75a8ec937d0388e6364f51a *R/readSpectronautRunInfo.R
15bcb8918d3c9d9c2e9ce0344762f13b *R/removeNARows.R
c98a5ba0d743685d864c3e3de20c43c0 *R/simCompleteDataON.R
4eb6255d87fb1392776767141e11f4bc *R/simProteinDataSet.R
49edfbff78efb0df2eafc2884e41cfe5 *R/voomaLmFitWithImputation.R
533839446f70bde34a1050627ce80586 *build/partial.rdb
28591c23da56cd2139780ffebebf0a47 *build/vignette.rds
568c6fcd9a72f734a2c6988ae9d758f1 *inst/CITATION
c3672879cdd77367cde7c9bcf805663e *inst/NEWS.Rd
3d5e3b3415126933e8010b8e3d9014e4 *inst/doc/limpa.R
1d1460dea6a6baa715a58db288b3e0b6 *inst/doc/limpa.Rmd
d04c5d81a89b5ddeb4ec82505044144b *inst/doc/limpa.html
e594d8b0989caec00ffae89cc7224c0e *man/EListFromLongFormatFile.Rd
d7175cf02c896fc23f53d06f2815bff5 *man/completeMomentsON.Rd
886d0749343c7eccd8ffe82d8bd45ea1 *man/dpc.Rd
497a8b83cf993a9ffd5eb92c2b4e79d1 *man/dpcCN.Rd
8fc0a209c0d5a0121290716d4402e7d8 *man/dpcDE.Rd
1d8409a7b963f7e58e83d0de9d8d132d *man/dpcON.Rd
ad93ce6732a5a8c5f790acfbe3038707 *man/dpcQuant.Rd
08c943d2a640627d5d96a305d1299073 *man/dpcquantHyperparam.Rd
20b368caf065b3a32d47840803ed5133 *man/dtbinom.Rd
a4b032e9527fcca087dc0ee3b32ce303 *man/estimateDPCIntercept.Rd
b92e6a51a1f449eda34f036fda5f3c41 *man/filterByDetection.Rd
cdce252feeb6d579a1905009130133d5 *man/filterCompoundProteins.Rd
e58ee4ee9069c804c562ce99fe17f1cf *man/fitZTLogit.Rd
301e4a72516f5720b6389856fe8780d6 *man/imputeByExpTilt.Rd
d27866ef1322459def274c3e37d6eb29 *man/limpa-package.Rd
1c4b7b1ca11eac2f8728198a0869f0cc *man/observedMomentsCN.Rd
0a3050ed8059e890c8d7d63ef50073a3 *man/peptide2Protein.Rd
869c800afa3139100750536c86a3205c *man/peptide2Proteins.Rd
070268c7adcca1386e556ecd14041370 *man/plotAveVsMis.Rd
1fd2ca8b8723c6eadf66ea429e876506 *man/plotDPC.Rd
fd9ff71a7b3b80019ebb98d457667f4a *man/plotMDSUsingSEs.Rd
caaebff8771d41b7610c919659217278 *man/plotPeptides.Rd
df5fdfe8fdeb1c7ef2d226aac12e9eda *man/plotProtein.Rd
791a4e7f765f0eb0965b9514daa14bc6 *man/proteinResVarFromCompletePeptideData.Rd
2f0a2b51027119a78f5f3e41f832c7f1 *man/pztbinomSameSizeLogitPBothTails.Rd
183288cc193421600ef11cc224540d5e *man/readDIANN.Rd
76aebfcba3ed174f93f528557bfa670c *man/readFragPipe.Rd
01e7ba7b79a7ba7934392e1873f0129d *man/readMaxQuant.Rd
2409044d46ab3afb0178915e259a0cfc *man/readSpectronaut.Rd
169b17944d43a0f653db0ada4855a246 *man/removeNARows.Rd
e80ee510b4321bbb3d496d201a0e57d9 *man/simCompleteDataON.Rd
e3ea40b6f7ac55d3135a85c30b1e399e *man/simProteinDataSet.Rd
850e5651045883ad337ef671d562d0b2 *man/voomaLmFitWithImputation.Rd
c75331c8cdd9880c303f024b6ef14a8d *tests/limpa-Tests.R
fd0a866c66a258f655e3a96c1cd2bbc0 *tests/limpa-Tests.Rout.save
1d1460dea6a6baa715a58db288b3e0b6 *vignettes/limpa.Rmd
