2b720b1bd9cbef746f58aa0609a470de *DESCRIPTION
f3cfb06bb4af56d16286adf62d251dcd *NAMESPACE
b4755c10eb4349e1b13e996398679218 *NEWS.md
4caafa82ced78362fe8277244a90455f *R/AllClasses.R
acf6655db3e16762295fb15969f68400 *R/AllGenerics.R
b806f940be582267f04b7996f9ef0734 *R/RcppExports.R
a8950dfda9b29c78b8b0c9b2edb41e14 *R/aa-global.R
419d496691959cfe171261524afa02ee *R/accessor.R
0e88a4fb0df732025bbd4c69f203bb8d *R/build_custom_db.R
7e7a0dc9fc4971b6e30a015857ab69b5 *R/comp_fea_res.R
9a5179a1ea5d0ab1739ccbc6ccebd2fa *R/dsea_GSEA.R
19cfc5f57cf9c558e0bb6b727c11d344 *R/dsea_hyperG.R
9fb92c7387316fadcc9ab06484eb23e5 *R/dtnetplot.R
052b607ffdc2b4b14d0ba013580f0945 *R/feaResult-methods.R
47c853b1756884dfb4dfb6bbbcce171d *R/fgsea2.R
6409e1b318b4bdba71d2148fc70466c5 *R/gessResult-methods.R
4ae46227831b0ace4d7a2b204398c078 *R/gess_cmap.R
ae8b5c7da3cdf6c7d5ed285faaf6f153 *R/gess_cor.R
bcbca5023abfbe6e34203bb1a8c5365d *R/gess_fisher.R
71940ed79a1a0eaa6cb03dc292e56f8f *R/gess_gcmap.R
edd4eda99175eaf0274b81f64650ee52 *R/gess_lincs.R
1eb699b13e4a34fb87626c560e542c71 *R/gess_res_summary.R
d9bb574592fed1d9bb8c4ebcc3939a9c *R/get_functional_catgory_data.R
0e6f58633a967c9398a3b5f9673b2daf *R/get_targets.R
2caeea61541eb537cfa4e3e45ff7eeb9 *R/gseAnalyzer2.R
ae3e665d89f2a2c29eedf630b280b914 *R/gsea_internal.R
af99aa220cfe0e8c01a039e0d0110d5f *R/gsea_internal2.R
2a56d7165702b89539349c7d4ddce55a *R/io.R
ff61e933deabdb2a0248dc359c248d1b *R/mabsAnalyser.R
5b40831639d48c74bbaef5bdb77e6a57 *R/mabs_internal.R
e3c289e818a964fa0d36a6ef06f27d7c *R/moa_conn.R
de6667e75ee7be3fabf55e766a515b6e *R/oraAnalyzer.R
20627eeadbbcb81370c18d437bafb0d3 *R/ora_internal.R
d65cbb0bfc51d79ff1e5ad3cab789836 *R/qSig-methods.R
7738fac957bc16af6c99829d430a8931 *R/refdb_treat_info.R
3fd6aad0332e79a054b0b52a247718be *R/runWF.R
2ad11ae306addc9e40b33dd700189f76 *R/signatureSearch-package.r
b9974a1a1f98570d35b520c397dc856f *R/sysdata.rda
a8a13cfd1903c871134f5e30b0a85230 *R/tsea_dup_hyperG.R
b4e56dc72b81a8a3424227e95301430c *R/tsea_mGSEA.R
de4815e551e87cb29d5c92c9918a650c *R/tsea_mabs.R
b88ab21c64103dc29d19ceadcb2b1874 *R/utilities.R
2e5edc1cf06017812e5bb78ebc1c526e *README.md
36ce3eb39a245b6be15afb7beb4acb0e *build/vignette.rds
21df6739491e12ce811766935a55c309 *data/cell_info.rda
12f770a673ea20220a2771cda8f6260b *data/cell_info2.rda
c9667124087179fb6dd1edb03d914d90 *data/chembl_moa_list.rda
1312287cec829f84a474f368dd747b74 *data/clue_moa_list.rda
026646638a3139f9303f9bf9026d315c *data/datalist
ded9df7261042bc403c91aefcbcd82f2 *data/drugs10.rda
f553ac7041d9c7e88fe3c4b97759c074 *data/lincs_expr_inst_info.rda
6e9fd48c34301a22b27d841be2e22c28 *data/lincs_pert_info.rda
367d57401c7cafb74db42b59d047184a *data/lincs_pert_info2.rda
d680e2e30318ecbbe3315e26bfbfe40e *data/lincs_sig_info.rda
ceda5878b62cd9eb95ce5c50d234b5da *data/targetList.rda
2734d2bf46a7db9e5a83ec6a070f1d82 *inst/CITATION
956b65dcb96b10e86c6db877a71d77fb *inst/doc/signatureSearch.R
f7c1c3eeee58ff9b52eba97adf0f6428 *inst/doc/signatureSearch.Rmd
ac2db30db143831c434dd9021299807c *inst/doc/signatureSearch.html
dadf4e704c493b69ebc9f4a95e8ecc3d *inst/extdata/GESS_FEA_report.Rmd
f69ff75c29a4179dfa4cfa8ca360dfcd *inst/extdata/GESS_report.Rmd
fc1ab1bd3121d4e7e02eec0127e3254e *inst/extdata/LINCSGeneSpaceSub.txt
a324915976ab8c1113ad15d02c8df757 *inst/extdata/sample_db.h5
25b588dfe765f49b7bc68ace976b5221 *inst/extdata/slurm.tmpl
d26bc1c1c7aaa0754505e16fc4765bdc *inst/extdata/test_gene_sets_n4.gmt
fbea04511d7512b6a282d9a0ed545c56 *inst/extdata/test_sample_n2x12328.gctx
81183a1d36b29aed2f49f6c324ff69c1 *man/GCT-object.Rd
8092a42ba740f2dbd9edfd0779c57d18 *man/addGESSannot.Rd
eeee879c6031ef0dbb157ade31a78f1d *man/addMOA.Rd
87f7ca6f25371f9275a65f066fc6979f *man/add_pcid.Rd
be4b0253221a4a06cbe9279e76a9b67e *man/append2H5.Rd
679fe340ed243b84a81c0846f61b574a *man/build_custom_db.Rd
a4ee44094ded118c05a2c39dbdf159a4 *man/calcGseaStatBatchCpp.Rd
1089bcf25b7bd50f99d2a5eeafb4d408 *man/cash-.feaResult.Rd
493abb8a9bdd0b8f43cbc27bb0dbdc59 *man/cellNtestPlot.Rd
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bd7f4e4b560ea2add33ad04ae275a7bb *man/cell_info2.Rd
c8ea087bbc73db18e638a52788a0d83c *man/chembl_moa_list.Rd
fecfc13f62fec538a02067646e3b69fc *man/clue_moa_list.Rd
ad7e1816fda36090df9c428c021955b4 *man/comp_fea_res.Rd
511865f1be7deb50a563f412abeffc1c *man/create_empty_h5.Rd
2b8e909142b13697c948aa04406e09ce *man/dim-methods.Rd
41d4de9d0820b754768d56461440df03 *man/drug_cell_ranks.Rd
b133bf50c5f8da5851b7a55795e14ba8 *man/drugs-methods.Rd
a4bbb32e6fe91b52f9d3b04b7f38a3d3 *man/drugs10.Rd
0ccccaa39c7f796449385b0b73e17b2a *man/dtnetplot.Rd
bd5593cd104937263d0c92308ca46b26 *man/enrichGO2.Rd
4380ccd8447903be99aeac2dbbbd7833 *man/enrichMOA.Rd
253a9bec0f8f0d3f5e589de6270799f1 *man/enrichReactome.Rd
d3cb84617f56a19fbd6d1f028c061662 *man/fea.Rd
644678f24957d110bb5d9e383f7de8fc *man/feaResult-class.Rd
28fe431a6e070b54ed23a45cf500cd3d *man/feaResult.Rd
e882d4946952e4d04b5b9c731ad3c0b6 *man/gctx2h5.Rd
f2dfe1f8d9e419b5519ffa0a28607c88 *man/gess.Rd
acde0acb12dc013756c97adc9610d37f *man/gessResult-class.Rd
80c38097e10d8f048f6c7898475258f9 *man/gessResult.Rd
cb5320a98cd3ffbce36a90ebc8deb72e *man/gess_res_vis.Rd
66cee8040a1f8aa983f5d9e3c71a3440 *man/getALLEG.Rd
6e1485d698df0454c956eb978289bd52 *man/getDb.Rd
374e3b9cb9e3b2d4717717a6789a8988 *man/getSig.Rd
5c7a17d170e543a197fc99138eea4f7b *man/getTreats.Rd
37611d558e1fc307fc63229e2935b2c5 *man/get_targets.Rd
6c9eef8d05a9e0335f1cd561fc5c0d57 *man/gmt2h5.Rd
a4ac9c37cff41e2ad5944301f39954b0 *man/gseGO2.Rd
3f4b77bc67ff8e777237bc379677b278 *man/gseReactome.Rd
c03dad4644fad70b6d506d88610f9b46 *man/head-methods.Rd
6759e6d4ff84766934ee4f6a029a2993 *man/lincs_expr_inst_info.Rd
588887100f4bb52c0492f86bd14ef3ca *man/lincs_pert_info.Rd
3150230144fd09ebb9c3fcc7cdc472be *man/lincs_pert_info2.Rd
32a082ef3ce2a8fec79ea57a6d6e768b *man/lincs_sig_info.Rd
c673551480edf4e03a2f880e2eea9859 *man/list2df.Rd
d314d774b7a3295f1855cebb79d7b39a *man/list_rev.Rd
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0f1ef49ab359bec798a5829d559daa9f *man/matrix2h5.Rd
d3eeb09c4a61b647db12597f48e72a45 *man/meanExpr2h5.Rd
c36204723575646f9308107d29a2baf4 *man/moa_conn.Rd
c70ae53544f28d7785969425c39966c3 *man/parse_gctx.Rd
d3d82621c62927bef7d8447186938904 *man/qSig-class.Rd
c1bb9726714b8c6b22e03b17139e28b0 *man/qSig.Rd
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de5fbb62877fa2fc47343f7800d3c44a *man/read_gmt.Rd
0b05e1f67806ac39f5509d69f457db71 *man/result-methods.Rd
4e229dccd3332f3b5929d7c626bf7186 *man/runWF.Rd
a5f2db60238e2bbb08592dd7de0692d8 *man/set_readable.Rd
b21c77a0fdbff9058b1e6f0930f86fcd *man/show-methods.Rd
b8ac24f4aceb22feaae78646f7a9ab1d *man/signatureSearch-package.Rd
5f494afa651c05bc453018e1da2fc136 *man/sim_score_grp.Rd
1f24be43c4fccb3d17f9400ee998fa64 *man/sub-.feaResult.Rd
120c8e248f9b124a725e0247fdfdca7e *man/tail-methods.Rd
83ad15f4a5a6ec8129ec06596de7b20d *man/tarReduce.Rd
d6cd25614bfbad0adfcf20085271df4f *man/targetList.Rd
ff89a814c72f1dbf6259ae470beb38bd *man/vec_char_redu.Rd
dd80ec7af491be3941cbf56933c91ee8 *src/RcppExports.cpp
1258624d70fb66d73ab2ad26ab5e0caf *src/fastGSEA.cpp
97a6971621067e9919daa36a1d88c51a *src/fastGSEA.h
3ff59335d41aef998fcb04bd7e000123 *src/fgsea_init.c
30a266025e80af6eb83a6e69b437546a *tests/testthat.R
4e6d8b1ec1df60ca632a4290467cc078 *vignettes/bibtex.bib
eb7dec6f3403b0e9d4c5efd99ff22a9a *vignettes/images/lincs_cell_ntest.png
4b71e326cb13be56035dbf2611741971 *vignettes/images/ss_fc.png
87eeb2d3c8663aa8d6c7be7527bea6df *vignettes/images/ss_wf.png
baf8b335bff7436aa3e90d2e71cf81b5 *vignettes/images/vorinostat_SKB_lincs_gess_res_vis.png
f7c1c3eeee58ff9b52eba97adf0f6428 *vignettes/signatureSearch.Rmd
