# Generated by roxygen2: do not edit by hand

export(.reorder_params)
export(BASiCS_CalculateERCC)
export(BASiCS_CorrectOffset)
export(BASiCS_DenoisedCounts)
export(BASiCS_DenoisedRates)
export(BASiCS_DetectHVG)
export(BASiCS_DetectLVG)
export(BASiCS_DetectVG)
export(BASiCS_DiagHist)
export(BASiCS_DiagPlot)
export(BASiCS_DivideAndConquer)
export(BASiCS_Draw)
export(BASiCS_EffectiveSize)
export(BASiCS_Filter)
export(BASiCS_LoadChain)
export(BASiCS_MCMC)
export(BASiCS_MockSCE)
export(BASiCS_PlotDE)
export(BASiCS_PlotOffset)
export(BASiCS_PlotVG)
export(BASiCS_PriorParam)
export(BASiCS_ShowFit)
export(BASiCS_Sim)
export(BASiCS_TestDE)
export(BASiCS_VarThresholdSearchHVG)
export(BASiCS_VarThresholdSearchLVG)
export(BASiCS_VarThresholdSearchVG)
export(BASiCS_VarianceDecomp)
export(BASiCS_diagHist)
export(BASiCS_diagPlot)
export(BASiCS_effectiveSize)
export(BASiCS_showFit)
export(displayChainBASiCS)
export(displaySummaryBASiCS)
export(format)
export(makeExampleBASiCS_Data)
export(newBASiCS_Chain)
export(newBASiCS_Data)
exportClasses(BASiCS_Chain)
exportClasses(BASiCS_Summary)
exportMethods("[")
exportMethods("[[")
exportMethods("rowData<-")
exportMethods(BASiCS_PlotDE)
exportMethods(Summary)
exportMethods(as.data.frame)
exportMethods(dim)
exportMethods(dimnames)
exportMethods(displayChainBASiCS)
exportMethods(displaySummaryBASiCS)
exportMethods(format)
exportMethods(plot)
exportMethods(rowData)
exportMethods(show)
exportMethods(subset)
exportMethods(updateObject)
importClassesFrom(Biobase,Versioned)
importFrom(BiocGenerics,as.data.frame)
importFrom(MASS,mvrnorm)
importFrom(Rcpp,evalCpp)
importFrom(Rcpp,sourceCpp)
importFrom(S4Vectors,DataFrame)
importFrom(SingleCellExperiment,"altExp<-")
importFrom(SingleCellExperiment,"altExpNames<-")
importFrom(SingleCellExperiment,SingleCellExperiment)
importFrom(SingleCellExperiment,altExp)
importFrom(SingleCellExperiment,altExpNames)
importFrom(SingleCellExperiment,counts)
importFrom(SummarizedExperiment,"colData<-")
importFrom(SummarizedExperiment,"rowData<-")
importFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,assayNames)
importFrom(SummarizedExperiment,assays)
importFrom(SummarizedExperiment,colData)
importFrom(SummarizedExperiment,rowData)
importFrom(assertthat,assert_that)
importFrom(coda,HPDinterval)
importFrom(coda,effectiveSize)
importFrom(coda,geweke.diag)
importFrom(coda,mcmc)
importFrom(cowplot,plot_grid)
importFrom(ggExtra,ggMarginal)
importFrom(ggplot2,.data)
importFrom(ggplot2,aes)
importFrom(ggplot2,after_stat)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,geom_boxplot)
importFrom(ggplot2,geom_col)
importFrom(ggplot2,geom_hex)
importFrom(ggplot2,geom_histogram)
importFrom(ggplot2,geom_hline)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_ribbon)
importFrom(ggplot2,geom_segment)
importFrom(ggplot2,geom_violin)
importFrom(ggplot2,geom_vline)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_color_brewer)
importFrom(ggplot2,scale_colour_brewer)
importFrom(ggplot2,scale_colour_manual)
importFrom(ggplot2,scale_fill_brewer)
importFrom(ggplot2,scale_fill_gradientn)
importFrom(ggplot2,scale_x_continuous)
importFrom(ggplot2,scale_x_log10)
importFrom(ggplot2,scale_y_continuous)
importFrom(ggplot2,scale_y_log10)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,theme_classic)
importFrom(ggplot2,theme_minimal)
importFrom(ggplot2,xlab)
importFrom(ggplot2,xlim)
importFrom(ggplot2,ylab)
importFrom(ggplot2,ylim)
importFrom(grDevices,adjustcolor)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,nclass.FD)
importFrom(graphics,segments)
importFrom(hexbin,hexbin)
importFrom(matrixStats,colMeans2)
importFrom(matrixStats,colMedians)
importFrom(matrixStats,colVars)
importFrom(matrixStats,rowMeans2)
importFrom(matrixStats,rowMedians)
importFrom(matrixStats,rowVars)
importFrom(methods,.hasSlot)
importFrom(methods,Summary)
importFrom(methods,is)
importFrom(methods,new)
importFrom(methods,show)
importFrom(methods,slotNames)
importFrom(posterior,rhat)
importFrom(scran,calculateSumFactors)
importFrom(scuttle,cleanSizeFactors)
importFrom(stats,acf)
importFrom(stats,ar)
importFrom(stats,density)
importFrom(stats,lag)
importFrom(stats,lm)
importFrom(stats,median)
importFrom(stats,model.matrix)
importFrom(stats,na.omit)
importFrom(stats,quantile)
importFrom(stats,rgamma)
importFrom(stats,rlnorm)
importFrom(stats,rpois)
importFrom(stats,runif)
importFrom(stats,setNames)
importFrom(stats,var)
importFrom(stats4,plot)
importFrom(utils,packageVersion)
importFrom(utils,read.delim)
importFrom(utils,write.table)
importFrom(viridis,scale_color_viridis)
importFrom(viridis,scale_fill_viridis)
importMethodsFrom(BiocGenerics,colnames)
importMethodsFrom(BiocGenerics,counts)
importMethodsFrom(BiocGenerics,rownames)
importMethodsFrom(BiocGenerics,subset)
importMethodsFrom(BiocGenerics,updateObject)
importMethodsFrom(Matrix,rowMeans)
importMethodsFrom(Matrix,t)
useDynLib(BASiCS)
