Package: DropletUtils
Version: 1.31.0
Date: 2025-08-27
Title: Utilities for Handling Single-Cell Droplet Data
Authors@R: c(
    person("Aaron", "Lun", role = "aut"),
    person("Jonathan", "Griffiths", role=c("ctb", "cre"), email = "jonathan.griffiths.94@gmail.com"),
    person("Davis", "McCarthy", role="ctb"),
    person("Dongze", "He", role="ctb"),
    person("Rob", "Patro", role="ctb"))
Depends: SingleCellExperiment
Imports: utils, stats, methods, Matrix, Rcpp, BiocGenerics, S4Vectors,
        IRanges, GenomicRanges, SummarizedExperiment, BiocParallel,
        SparseArray (>= 1.5.18), DelayedArray (>= 0.31.9),
        DelayedMatrixStats, HDF5Array, rhdf5, edgeR, R.utils, dqrng,
        beachmat, scuttle
Suggests: testthat, knitr, BiocStyle, rmarkdown, jsonlite,
        DropletTestFiles
biocViews: ImmunoOncology, SingleCell, Sequencing, RNASeq,
        GeneExpression, Transcriptomics, DataImport, Coverage
Description: Provides a number of utility functions for handling
        single-cell (RNA-seq) data from droplet technologies such as
        10X Genomics. This includes data loading from count matrices or
        molecule information files, identification of cells from empty
        droplets, removal of barcode-swapped pseudo-cells, and
        downsampling of the count matrix.
License: GPL-3
NeedsCompilation: yes
VignetteBuilder: knitr
LinkingTo: Rcpp, beachmat, assorthead, Rhdf5lib, BH, dqrng, scuttle
SystemRequirements: C++17, GNU make
RoxygenNote: 7.3.2
Encoding: UTF-8
Config/pak/sysreqs: make libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 14:42:43 UTC
RemoteUrl: https://github.com/bioc/DropletUtils
RemoteRef: HEAD
RemoteSha: 92de364ae2643a75ca0a84a4fb77de6dae0b0738
Packaged: 2026-02-21 08:58:23 UTC; root
Author: Aaron Lun [aut],
  Jonathan Griffiths [ctb, cre],
  Davis McCarthy [ctb],
  Dongze He [ctb],
  Rob Patro [ctb]
Maintainer: Jonathan Griffiths <jonathan.griffiths.94@gmail.com>
Built: R 4.6.0; x86_64-w64-mingw32; 2026-02-21 09:01:11 UTC; windows
Archs: x64
