{ "zebrafishcdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/zebrafishcdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "9ff4a9618ee2750b5874cecb3dfad8ae", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "zebrafishcdf", "source.ver": "src/contrib/zebrafishcdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "zebrafishcdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Danio_rerio", "cdf", "zebrafish" ], "Description": "A package containing an environment representing the Zebrafish.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/zebrafishcdf_2.11.0.zip" }, "hu35ksubcprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hu35ksubcprobe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "e50fc852f7ae2f9187239921132d5826", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type hu35ksubc", "source.ver": "src/contrib/hu35ksubcprobe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "hu35ksubcprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "hu35ksubc", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Hu35KsubC\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hu35ksubcprobe_2.11.0.zip" }, "mgu74bprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/mgu74bprobe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "ee0203c93d44c76fa677d3ac027c1c8d", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type mgu74b", "source.ver": "src/contrib/mgu74bprobe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "mgu74bprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "mgu74b", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was MG-U74B\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/mgu74bprobe_2.11.0.zip" }, "mouse4302frmavecs": { "Depends": [ "R (>= 2.10.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/mouse4302frmavecs_1.1.12.tgz", "Version": "1.1.12", "hasINSTALL": false, "MD5sum": "65679ed634f3eaff7e214555254fa9b5", "Maintainer": "Matthew N. McCall ", "Author": "Matthew N. McCall , Rafael A. Irizarry ", "Title": "Vectors used by frma for microarrays of type mouse4302", "suggestsMe": [ "ChIPXpress" ], "source.ver": "src/contrib/mouse4302frmavecs_1.1.12.tar.gz", "NeedsCompilation": "no", "Package": "mouse4302frmavecs", "License": "GPL (>= 2)", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "mouse4302" ], "Description": "This package was created by frmaTools version 1.9.1.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/mouse4302frmavecs_1.1.12.zip" }, "BSgenome.Scerevisiae.UCSC.sacCer1": { "organism": "Saccharomyces cerevisiae", "Depends": [ "BSgenome (>= 1.19.2)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/BSgenome.Scerevisiae.UCSC.sacCer1_1.3.17.tgz", "Version": "1.3.17", "hasINSTALL": false, "MD5sum": "5bdbcd34307f5bcbd5c2a7a1350319f1", "Maintainer": "Biocore Team c/o BioC user list ", "Author": "H. Pages", "Title": "Saccharomyces cerevisiae (Yeast) full genome (UCSC version sacCer1)", "source.ver": "src/contrib/BSgenome.Scerevisiae.UCSC.sacCer1_1.3.17.tar.gz", "Imports": [ "BSgenome" ], "NeedsCompilation": "no", "Package": "BSgenome.Scerevisiae.UCSC.sacCer1", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Genetics", "Saccharomyces_cerevisiae" ], "Description": "Saccharomyces cerevisiae (Yeast) full genome as provided by UCSC (sacCer1, Oct. 2003) and stored in Biostrings objects.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/BSgenome.Scerevisiae.UCSC.sacCer1_1.3.17.zip" }, "hthgu133pluspmcdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hthgu133pluspmcdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "4ca41ee33f0a8ab6639674f15f8ee140", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "hthgu133pluspmcdf", "source.ver": "src/contrib/hthgu133pluspmcdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "hthgu133pluspmcdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "hthgu133pluspm" ], "Description": "A package containing an environment representing the HT_HG-U133_Plus_PM.CDF file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hthgu133pluspmcdf_2.11.0.zip" }, "lumiRatIDMapping": { "organism": "Rattus norvegicus", "Depends": [ "R (>= 2.7.0)", "lumi (>= 1.7.14)", "methods", "AnnotationDbi (>= 1.13.13)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/lumiRatIDMapping_1.10.0.tgz", "Version": "1.10.0", "hasINSTALL": false, "MD5sum": "1122fc25e3fff62678bed36f9d7b5709", "Maintainer": "Gilbert Feng ", "Author": "Pan Du, Gilbert Feng, Warren Kibbe, Simon Lin", "Title": "Illumina Identifier mapping for Rat", "source.ver": "src/contrib/lumiRatIDMapping_1.10.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "Package": "lumiRatIDMapping", "License": "The Artistic License, Version 2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Rattus norvegicus" ], "Description": "This package includes mappings information between different types of Illumina IDs of Illumina Rat chips and nuIDs. It also includes mappings of all nuIDs included in Illumina Rat chips to RefSeq IDs with mapping qualities information.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/lumiRatIDMapping_1.10.0.zip" }, "citrusprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/citrusprobe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "6455caed956acfcd82d6de0b25f779d6", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type citrus", "source.ver": "src/contrib/citrusprobe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "citrusprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Citrus_sp", "citrus", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Citrus\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/citrusprobe_2.11.0.zip" }, "BSgenome.Scerevisiae.UCSC.sacCer2": { "organism": "Saccharomyces cerevisiae", "Depends": [ "BSgenome (>= 1.25.4)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/BSgenome.Scerevisiae.UCSC.sacCer2_1.3.19.tgz", "Version": "1.3.19", "hasINSTALL": false, "MD5sum": "2ddd27f31e0da595c2eff73efca07328", "Maintainer": "Bioconductor Package Maintainer ", "Author": "The Bioconductor Dev Team", "Title": "Saccharomyces cerevisiae (Yeast) full genome (UCSC version sacCer2)", "suggestsMe": [ "GenomicRanges" ], "source.ver": "src/contrib/BSgenome.Scerevisiae.UCSC.sacCer2_1.3.19.tar.gz", "Imports": [ "BSgenome" ], "NeedsCompilation": "no", "Package": "BSgenome.Scerevisiae.UCSC.sacCer2", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Genetics", "Saccharomyces_cerevisiae" ], "Description": "Saccharomyces cerevisiae (Yeast) full genome as provided by UCSC (sacCer2, June 2008) and stored in Biostrings objects.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/BSgenome.Scerevisiae.UCSC.sacCer2_1.3.19.zip" }, "BSgenome.Cfamiliaris.UCSC.canFam2": { "organism": "Canis lupus familiaris", "Depends": [ "BSgenome (>= 1.19.2)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/BSgenome.Cfamiliaris.UCSC.canFam2_1.3.17.tgz", "Version": "1.3.17", "hasINSTALL": false, "MD5sum": "58f9035bfde1b6f756ba782102b56b20", "Maintainer": "Biocore Team c/o BioC user list ", "Author": "H. Pages", "Title": "Canis lupus familiaris full genome (UCSC version canFam2)", "source.ver": "src/contrib/BSgenome.Cfamiliaris.UCSC.canFam2_1.3.17.tar.gz", "Imports": [ "BSgenome" ], "NeedsCompilation": "no", "Package": "BSgenome.Cfamiliaris.UCSC.canFam2", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Canis_familiaris", "Genetics" ], "Description": "Canis lupus familiaris full genome as provided by UCSC (canFam2, May 2005) and stored in Biostrings objects.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/BSgenome.Cfamiliaris.UCSC.canFam2_1.3.17.zip" }, "BSgenome.Celegans.UCSC.ce2": { "organism": "Caenorhabditis elegans", "Depends": [ "BSgenome (>= 1.25.4)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/BSgenome.Celegans.UCSC.ce2_1.3.19.tgz", "Version": "1.3.19", "dependsOnMe": [ "REDseq" ], "hasINSTALL": false, "MD5sum": "fbd1f7633633da7c69ac2bfc2adc4fa3", "Maintainer": "Bioconductor Package Maintainer ", "Author": "The Bioconductor Dev Team", "Title": "Caenorhabditis elegans (Worm) full genome (UCSC version ce2)", "suggestsMe": [ "Biostrings", "BSgenome", "GenomicFeatures", "IRanges" ], "source.ver": "src/contrib/BSgenome.Celegans.UCSC.ce2_1.3.19.tar.gz", "Imports": [ "BSgenome" ], "NeedsCompilation": "no", "Package": "BSgenome.Celegans.UCSC.ce2", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Caenorhabditis_elegans", "Genetics" ], "Description": "Caenorhabditis elegans (Worm) full genome as provided by UCSC (ce2, Mar. 2004) and stored in Biostrings objects.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/BSgenome.Celegans.UCSC.ce2_1.3.19.zip" }, "xlaevis2probe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/xlaevis2probe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "2e7ee0c62dc2fc5881ccdc56fd4cfe50", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type xlaevis2", "source.ver": "src/contrib/xlaevis2probe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "xlaevis2probe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Xenopis_laevis", "probe", "xlaevis2" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was X\\_laevis\\_2\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/xlaevis2probe_2.11.0.zip" }, "pd.hg.u219": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.hg.u219_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "489b2df2785b9bf3f53ee395713b4d2f", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name HG-U219", "source.ver": "src/contrib/pd.hg.u219_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.hg.u219", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name HG-U219", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.hg.u219_1.8.0.zip" }, "BSgenome.Scerevisiae.UCSC.sacCer3": { "organism": "Saccharomyces cerevisiae", "Depends": [ "BSgenome (>= 1.25.4)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/BSgenome.Scerevisiae.UCSC.sacCer3_1.3.19.tgz", "Version": "1.3.19", "hasINSTALL": false, "MD5sum": "39b556568c87df61fa3b98d3e699b76d", "Maintainer": "Bioconductor Package Maintainer ", "Author": "The Bioconductor Dev Team", "Title": "Saccharomyces cerevisiae (Yeast) full genome (UCSC version sacCer3)", "suggestsMe": [ "gmapR" ], "source.ver": "src/contrib/BSgenome.Scerevisiae.UCSC.sacCer3_1.3.19.tar.gz", "Imports": [ "BSgenome" ], "NeedsCompilation": "no", "Package": "BSgenome.Scerevisiae.UCSC.sacCer3", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Genetics", "Saccharomyces_cerevisiae" ], "Description": "Saccharomyces cerevisiae (Yeast) full genome as provided by UCSC (sacCer3, April 2011) and stored in Biostrings objects.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/BSgenome.Scerevisiae.UCSC.sacCer3_1.3.19.zip" }, "BSgenome.Cfamiliaris.UCSC.canFam3": { "organism": "Canis lupus familiaris", "Depends": [ "BSgenome (>= 1.25.3)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/BSgenome.Cfamiliaris.UCSC.canFam3_1.3.19.tgz", "Version": "1.3.19", "hasINSTALL": false, "MD5sum": "90bff72e6e7bcf95fcfaf6c717b067f8", "Maintainer": "Bioconductor Package Maintainer ", "Author": "The Bioconductor Dev Team", "Title": "Canis lupus familiaris (Dog) full genome (UCSC version canFam3)", "source.ver": "src/contrib/BSgenome.Cfamiliaris.UCSC.canFam3_1.3.19.tar.gz", "Imports": [ "BSgenome" ], "NeedsCompilation": "no", "Package": "BSgenome.Cfamiliaris.UCSC.canFam3", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Canis_familiaris", "Genetics" ], "Description": "Canis lupus familiaris (Dog) full genome as provided by UCSC (canFam3, Sep. 2011) and stored in Biostrings objects.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/BSgenome.Cfamiliaris.UCSC.canFam3_1.3.19.zip" }, "hu35ksubc.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)", "org.Hs.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hu35ksubc.db_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "c10038af11b487d8c8ded46d4b78ba65", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Affymetrix Human Genome HU35K Set annotation data (chip hu35ksubc)", "source.ver": "src/contrib/hu35ksubc.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate", "RUnit" ], "Package": "hu35ksubc.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Homo_sapiens", "hu35ksubc" ], "Description": "Affymetrix Human Genome HU35K Set annotation data (chip hu35ksubc) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hu35ksubc.db_2.8.0.zip" }, "gahgu133plus2probe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.5.24)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/gahgu133plus2probe_2.2.0.tgz", "Version": "2.2.0", "hasINSTALL": false, "MD5sum": "6f82a17643236f87b039ab7d943b9b47", "Maintainer": "Francesco Ferrari", "Author": "Francesco Ferrari, Stefania Bortoluzzi, Alessandro Coppe, Alexandra Sirota, Marilyn Safran, Michael Shmoish, Sergio Ferrari, Doron Lancet, Gian Antonio Danieli and Silvio Bicciato.", "Title": "Probe sequence data for microarrays of type gahgu133plus2", "source.ver": "src/contrib/gahgu133plus2probe_2.2.0.tar.gz", "NeedsCompilation": "no", "Package": "gahgu133plus2probe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "GACustomCDF", "Homo_sapiens", "gahgu133plus2" ], "Description": "This package was automatically created by package AnnotationDbi version 1.5.24. The probe sequence data was obtained from http://www.affymetrix.com.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/gahgu133plus2probe_2.2.0.zip" }, "canineprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/canineprobe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "649fdc51e9a48f3faba00f19e24bec75", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type canine", "source.ver": "src/contrib/canineprobe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "canineprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Caenorhabditis_elegans", "canine", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Canine\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/canineprobe_2.11.0.zip" }, "hthgu133bprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hthgu133bprobe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "83e9b395c622de687dc0067c517a3ca1", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type hthgu133b", "source.ver": "src/contrib/hthgu133bprobe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "hthgu133bprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "hthgu133b", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HT\\_HG-U133B\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hthgu133bprobe_2.11.0.zip" }, "soybeanprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/soybeanprobe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "57c2f43626ad013a0f1167263bb9e5c4", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type soybean", "source.ver": "src/contrib/soybeanprobe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "soybeanprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Heterodera_glycines", "Phytophthora_sojae", "probe", "soybean" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Soybean\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/soybeanprobe_2.11.0.zip" }, "pd.mg.u74av2": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.mg.u74av2_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "96ab598cc8568502dbd91220e49762c1", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name MG_U74Av2", "source.ver": "src/contrib/pd.mg.u74av2_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.mg.u74av2", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name MG_U74Av2", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.mg.u74av2_1.8.0.zip" }, "gahgu133aprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.5.24)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/gahgu133aprobe_2.2.0.tgz", "Version": "2.2.0", "hasINSTALL": false, "MD5sum": "6ab57cda06bbe497bd92f312158950c6", "Maintainer": "Francesco Ferrari", "Author": "Francesco Ferrari, Stefania Bortoluzzi, Alessandro Coppe, Alexandra Sirota, Marilyn Safran, Michael Shmoish, Sergio Ferrari, Doron Lancet, Gian Antonio Danieli and Silvio Bicciato.", "Title": "Probe sequence data for microarrays of type gahgu133a", "source.ver": "src/contrib/gahgu133aprobe_2.2.0.tar.gz", "NeedsCompilation": "no", "Package": "gahgu133aprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "GACustomCDF", "Homo_sapiens", "gahgu133a" ], "Description": "This package was automatically created by package AnnotationDbi version 1.5.24. The probe sequence data was obtained from http://www.affymetrix.com.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/gahgu133aprobe_2.2.0.zip" }, "GGHumanMethCancerPanelv1.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.11.9)", "org.Hs.eg.db (>= 2.4.5)" ], "hasNEWS": false, "Version": "1.4.1", "hasINSTALL": false, "MD5sum": "e8f4a37182b175fb33dd54f8093e6f52", "Maintainer": "Sean Davis ", "Author": "Sean Davis ", "Title": "Illumina Golden Gate Human Methylation Cancer Panel Version 1 annotation data (chip GGHumanMethCancerPanelv1)", "source.ver": "src/contrib/GGHumanMethCancerPanelv1.db_1.4.1.tar.gz", "Imports": [ "methods", "AnnotationDbi", "AnnotationForge" ], "NeedsCompilation": "no", "manufacturer": "Illumina", "Suggests": [ "annotate" ], "Package": "GGHumanMethCancerPanelv1.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "GGHumanMethCancerPanelv1", "Homo_sapiens", "IlluminaChip" ], "Description": "Illumina Golden Gate Human Methylation Cancer Panel Version 1 annotation data (chip GGHumanMethCancerPanelv1) assembled using data from public repositories", "hasLICENSE": false }, "lumiHumanIDMapping": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "lumi (>= 1.7.14)", "methods", "AnnotationDbi (>= 1.13.13)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/lumiHumanIDMapping_1.10.0.tgz", "Version": "1.10.0", "hasINSTALL": false, "MD5sum": "e8d781acfd5d8732861b3ecba9e4edcf", "Maintainer": "Gilbert Feng ", "Author": "Pan Du, Gilbert Feng, Warren Kibbe, Simon Lin", "Title": "Illumina Identifier mapping for Human", "suggestsMe": [ "ind1KG", "lumi" ], "source.ver": "src/contrib/lumiHumanIDMapping_1.10.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "Package": "lumiHumanIDMapping", "License": "The Artistic License, Version 2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Homo sapiens" ], "Description": "This package includes mappings information between different types of Illumina IDs of Illumina Human chips and nuIDs. It also includes mappings of all nuIDs included in Illumina Human chips to RefSeq IDs with mapping qualities information.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/lumiHumanIDMapping_1.10.0.zip" }, "hgu133afrmavecs": { "Depends": [ "R (>= 2.10.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hgu133afrmavecs_1.1.13.tgz", "Version": "1.1.13", "hasINSTALL": false, "MD5sum": "2c38a23d7276ed9a78b7a040d56aa91e", "Maintainer": "Matthew N. McCall ", "Author": "Matthew N. McCall , Rafael A. Irizarry ", "Title": "Vectors used by frma for microarrays of type hgu133a", "suggestsMe": [ "frma", "frmaTools" ], "source.ver": "src/contrib/hgu133afrmavecs_1.1.13.tar.gz", "NeedsCompilation": "no", "Package": "hgu133afrmavecs", "License": "GPL (>= 2)", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "hgu133a" ], "Description": "This package was created by frmaTools version 1.9.1.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hgu133afrmavecs_1.1.13.zip" }, "hgu133bprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hgu133bprobe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "0b648d2551e81101b83f383ba2b55d27", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type hgu133b", "source.ver": "src/contrib/hgu133bprobe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "hgu133bprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "hgu133b", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG-U133B\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hgu133bprobe_2.11.0.zip" }, "mgu74av2.db": { "organism": "Mus musculus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.20.2)", "org.Mm.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/mgu74av2.db_2.8.1.tgz", "Version": "2.8.1", "hasINSTALL": false, "MD5sum": "c6bb11733d94720694da6d08e58a1d32", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Affymetrix Murine Genome U74v2 annotation data (chip mgu74av2)", "source.ver": "src/contrib/mgu74av2.db_2.8.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate", "RUnit" ], "Package": "mgu74av2.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Mus_musculus", "mgu74av2" ], "Description": "Affymetrix Murine Genome U74v2 annotation data (chip mgu74av2) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/mgu74av2.db_2.8.1.zip" }, "hu35ksubdprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hu35ksubdprobe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "f0faaaa461c43f888a0374234c5f0eb5", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type hu35ksubd", "source.ver": "src/contrib/hu35ksubdprobe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "hu35ksubdprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "hu35ksubd", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Hu35KsubD\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hu35ksubdprobe_2.11.0.zip" }, "BSgenome.Celegans.UCSC.ce6": { "organism": "Caenorhabditis elegans", "Depends": [ "BSgenome (>= 1.25.4)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/BSgenome.Celegans.UCSC.ce6_1.3.19.tgz", "Version": "1.3.19", "hasINSTALL": false, "MD5sum": "b74c0fc0f413a09d5b706f57c6d7f9b6", "Maintainer": "Bioconductor Package Maintainer ", "Author": "The Bioconductor Dev Team", "Title": "Caenorhabditis elegans (Worm) full genome (UCSC version ce6)", "source.ver": "src/contrib/BSgenome.Celegans.UCSC.ce6_1.3.19.tar.gz", "Imports": [ "BSgenome" ], "NeedsCompilation": "no", "Package": "BSgenome.Celegans.UCSC.ce6", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Caenorhabditis_elegans", "Genetics" ], "Description": "Caenorhabditis elegans (Worm) full genome as provided by UCSC (ce6, May 2008) and stored in Biostrings objects.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/BSgenome.Celegans.UCSC.ce6_1.3.19.zip" }, "hgu133bcdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hgu133bcdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "6c5cdd164f17462595b8ff91ee3b0e44", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "hgu133bcdf", "source.ver": "src/contrib/hgu133bcdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "hgu133bcdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "hgu133b" ], "Description": "A package containing an environment representing the HG-U133B.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hgu133bcdf_2.11.0.zip" }, "pd.genomewidesnp.5": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.genomewidesnp.5_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "e72d4ae00de1d223e90c4d3899e8a6b2", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for Affymetrix GenomeWideSNP_5", "suggestsMe": [ "cn.farms", "oligoClasses" ], "source.ver": "src/contrib/pd.genomewidesnp.5_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.genomewidesnp.5", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for Affymetrix GenomeWideSNP_5", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.genomewidesnp.5_1.8.0.zip" }, "pd.aragene.1.0.st": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.aragene.1.0.st_3.8.0.tgz", "Version": "3.8.0", "hasINSTALL": false, "MD5sum": "c3fb2bb96b6c7fa81a164e2982ab4b55", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for Affymetrix AraGene-1_0-st", "source.ver": "src/contrib/pd.aragene.1.0.st_3.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.aragene.1.0.st", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for Affymetrix AraGene-1_0-st", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.aragene.1.0.st_3.8.0.zip" }, "gahgu133b.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.5.24)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/gahgu133b.db_2.2.0.tgz", "Version": "2.2.0", "hasINSTALL": false, "MD5sum": "92455171c7a8db30dab78dd0f93ca743", "Maintainer": "Francesco Ferrari ", "Author": "Francesco Ferrari, Stefania Bortoluzzi, Alessandro Coppe, Alexandra Sirota, Marilyn Safran, Michael Shmoish, Sergio Ferrari, Doron Lancet, Gian Antonio Danieli and Silvio Bicciato", "Title": "Genecards derived annotations for gahgu133b custom probeset definitions", "source.ver": "src/contrib/gahgu133b.db_2.2.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Package": "gahgu133b.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "GeneCardsCustomSchema" ], "Description": "Genecards derived annotations for gahgu133b custom probeset definitions assembled using data from the GeneCards database (www.genecards.org)", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/gahgu133b.db_2.2.0.zip" }, "ag.db": { "organism": "Arabidopsis thaliana", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)", "org.At.tair.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/ag.db_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "cfbda3cd75a4ef78e90a40c931237542", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Affymetrix Arabidopsis Genome Array annotation data (chip ag)", "source.ver": "src/contrib/ag.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate", "RUnit" ], "Package": "ag.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Arabidopsis_thaliana", "ChipDb", "ag" ], "Description": "Affymetrix Arabidopsis Genome Array annotation data (chip ag) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/ag.db_2.8.0.zip" }, "bovinecdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/bovinecdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "26f91c35dcc876f480d1ebbc4a6940de", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "bovinecdf", "source.ver": "src/contrib/bovinecdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "bovinecdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Bos_taurus", "bovine", "cdf" ], "Description": "A package containing an environment representing the Bovine.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/bovinecdf_2.11.0.zip" }, "rat.db0": { "organism": "Rattus norvegicus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.1.15)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/rat.db0_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "59733b12158c42b375971116599e192a", "Maintainer": "Biocore Team c/o BioC user list ", "Author": "Marc Carlson, Nianhua Li, Herve Pages", "Title": "Base Level Annotation databases for rat", "suggestsMe": [ "Resourcerer" ], "source.ver": "src/contrib/rat.db0_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "Package": "rat.db0", "License": "The Artistic License, Version 2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Rattus_norvegicus", "db0" ], "Description": "Base annotation databases for rat, intended ONLY to be used by AnnotationDbi to produce regular annotation packages.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/rat.db0_2.8.0.zip" }, "pd.x.laevis.2": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.x.laevis.2_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "d3cb3955bda86ef775f8f3edaab26b87", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name X_laevis_2", "source.ver": "src/contrib/pd.x.laevis.2_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.x.laevis.2", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name X_laevis_2", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.x.laevis.2_1.8.0.zip" }, "pd.genomewidesnp.6": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.genomewidesnp.6_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "9e81f8e8620d703395e8098e1d082012", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for Affymetrix GenomeWideSNP_6", "suggestsMe": [ "cn.farms", "oligoClasses" ], "source.ver": "src/contrib/pd.genomewidesnp.6_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.genomewidesnp.6", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for Affymetrix GenomeWideSNP_6", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.genomewidesnp.6_1.8.0.zip" }, "pd.2006.07.18.hg18.refseq.promoter": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.2006.07.18.hg18.refseq.promoter_1.6.0.tgz", "Version": "1.6.0", "hasINSTALL": false, "MD5sum": "9ebaf4d9ea66fe0ffbd1d0dd583fbd46", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for NimbleGen 2006-07-18_hg18_refseq_promoter", "suggestsMe": [ "oligoData" ], "source.ver": "src/contrib/pd.2006.07.18.hg18.refseq.promoter_1.6.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.2006.07.18.hg18.refseq.promoter", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for NimbleGen 2006-07-18_hg18_refseq_promoter", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.2006.07.18.hg18.refseq.promoter_1.6.0.zip" }, "cyp450cdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/cyp450cdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "bf64c6417d3c226798ff7fc28ec40025", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "cyp450cdf", "source.ver": "src/contrib/cyp450cdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "cyp450cdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "cyp450" ], "Description": "A package containing an environment representing the CYP450.CDF file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/cyp450cdf_2.11.0.zip" }, "gahgu95ccdf": { "Depends": [ "utils" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/gahgu95ccdf_2.2.0.tgz", "Version": "2.2.0", "hasINSTALL": false, "MD5sum": "42210f8b39598e9d36f457161dc96ce2", "Maintainer": "Francesco Ferrari ", "Author": "Francesco Ferrari, Stefania Bortoluzzi, Alessandro Coppe, Alexandra Sirota, Marilyn Safran, Michael Shmoish, Sergio Ferrari, Doron Lancet, Gian Antonio Danieli and Silvio Bicciato", "Title": "gahgu95ccdf", "source.ver": "src/contrib/gahgu95ccdf_2.2.0.tar.gz", "NeedsCompilation": "no", "Package": "gahgu95ccdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "GACustomCDF", "Homo Sapiens", "gahgu95c" ], "Description": "A package containing an environment representing the gahgu95c.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/gahgu95ccdf_2.2.0.zip" }, "genomewidesnp5Crlmm": { "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/genomewidesnp5Crlmm_1.0.6.tgz", "Version": "1.0.6", "hasINSTALL": false, "MD5sum": "cc24140cd17758b8e09f4fe6c931526a", "Maintainer": "Benilton S Carvalho , Robert Scharpf ", "Author": "Benilton S Carvalho", "Title": "Metadata for fast genotyping with the 'crlmm' package", "suggestsMe": [ "oligoClasses" ], "source.ver": "src/contrib/genomewidesnp5Crlmm_1.0.6.tar.gz", "Imports": [ "utils" ], "NeedsCompilation": "no", "Package": "genomewidesnp5Crlmm", "License": "Artistic-2.0", "biocViews": [ "AnnotationData" ], "hasREADME": false, "Description": "Package with metadata for fast genotyping Affymetrix GenomeWideSnp_5 arrays using the 'crlmm' package. Annotation build is hg19.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/genomewidesnp5Crlmm_1.0.6.zip" }, "IlluminaHumanMethylation450kannotation.ilmn.v1.2": { "Depends": [ "R (>= 2.10.0)", "minfi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/IlluminaHumanMethylation450kannotation.ilmn.v1.2_0.1.3.tgz", "Version": "0.1.3", "hasINSTALL": false, "MD5sum": "37a13625a2f03e20ff81ca7ea2f805c1", "Maintainer": "Kasper Daniel Hansen ", "Author": "Kasper Daniel Hansen", "Title": "Annotation for Illumina's 450k methylation arrays", "source.ver": "src/contrib/IlluminaHumanMethylation450kannotation.ilmn.v1.2_0.1.3.tar.gz", "NeedsCompilation": "no", "Package": "IlluminaHumanMethylation450kannotation.ilmn.v1.2", "License": "Artistic-2.0", "biocViews": [ "AnnotationData" ], "hasREADME": false, "Description": "Manifests and annotation for Illumina's 450k array data", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/IlluminaHumanMethylation450kannotation.ilmn.v1.2_0.1.3.zip" }, "rat2302.db": { "organism": "Rattus norvegicus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.20.2)", "org.Rn.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/rat2302.db_2.8.1.tgz", "Version": "2.8.1", "hasINSTALL": false, "MD5sum": "3665dfa483c382426e43940b62b7b399", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Affymetrix Rat Genome 230 2.0 Array annotation data (chip rat2302)", "suggestsMe": [ "pcaGoPromoter" ], "source.ver": "src/contrib/rat2302.db_2.8.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate", "RUnit" ], "Package": "rat2302.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Rattus_norvegicus", "rat2302" ], "Description": "Affymetrix Rat Genome 230 2.0 Array annotation data (chip rat2302) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/rat2302.db_2.8.1.zip" }, "FDb.UCSC.snp135common.hg19": { "organism": "Homo sapiens", "Depends": [ "GenomicFeatures (>= 1.7.22)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/FDb.UCSC.snp135common.hg19_1.0.0.tgz", "Version": "1.0.0", "hasINSTALL": false, "MD5sum": "0cdca5fa595bb69464016ceb97635f78", "Maintainer": "Tim Triche, Jr. ", "Author": "Tim Triche, Jr.", "Title": "UCSC common SNPs track for dbSNP build 135", "source.ver": "src/contrib/FDb.UCSC.snp135common.hg19_1.0.0.tar.gz", "Imports": [ "GenomicFeatures", "AnnotationDbi" ], "NeedsCompilation": "no", "Suggests": [ "BSgenome.Hsapiens.UCSC.hg19", "SNPlocs.Hsapiens.dbSNP.20111119" ], "Package": "FDb.UCSC.snp135common.hg19", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Homo_sapiens" ], "Description": "makeFeatureDbFromUCSC cannot cope with this track, hence a package", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/FDb.UCSC.snp135common.hg19_1.0.0.zip" }, "gahgu133bprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.5.24)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/gahgu133bprobe_2.2.0.tgz", "Version": "2.2.0", "hasINSTALL": false, "MD5sum": "e8b75e0269038e9304abc1f456328d51", "Maintainer": "Francesco Ferrari", "Author": "Francesco Ferrari, Stefania Bortoluzzi, Alessandro Coppe, Alexandra Sirota, Marilyn Safran, Michael Shmoish, Sergio Ferrari, Doron Lancet, Gian Antonio Danieli and Silvio Bicciato.", "Title": "Probe sequence data for microarrays of type gahgu133b", "source.ver": "src/contrib/gahgu133bprobe_2.2.0.tar.gz", "NeedsCompilation": "no", "Package": "gahgu133bprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "GACustomCDF", "Homo_sapiens", "gahgu133b" ], "Description": "This package was automatically created by package AnnotationDbi version 1.5.24. The probe sequence data was obtained from http://www.affymetrix.com.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/gahgu133bprobe_2.2.0.zip" }, "BSgenome.Gaculeatus.UCSC.gasAcu1": { "organism": "Gasterosteus aculeatus", "Depends": [ "BSgenome (>= 1.19.3)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/BSgenome.Gaculeatus.UCSC.gasAcu1_1.3.17.tgz", "Version": "1.3.17", "hasINSTALL": false, "MD5sum": "ed2891744a1227769b3d42dbcbfc0921", "Maintainer": "Biocore Team c/o BioC user list ", "Author": "H. Pages", "Title": "Gasterosteus aculeatus (Stickleback) full genome (UCSC version gasAcu1)", "source.ver": "src/contrib/BSgenome.Gaculeatus.UCSC.gasAcu1_1.3.17.tar.gz", "Imports": [ "BSgenome" ], "NeedsCompilation": "no", "Package": "BSgenome.Gaculeatus.UCSC.gasAcu1", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Gasterosteus_aculeatus", "Genetics" ], "Description": "Gasterosteus aculeatus (Stickleback) full genome as provided by UCSC (gasAcu1, Feb. 2006) and stored in Biostrings objects.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/BSgenome.Gaculeatus.UCSC.gasAcu1_1.3.17.zip" }, "u133x3pcdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/u133x3pcdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "369aff925aa1b63c8751e46a4e3abd05", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "u133x3pcdf", "source.ver": "src/contrib/u133x3pcdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "u133x3pcdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "u133x3p" ], "Description": "A package containing an environment representing the U133_X3P.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/u133x3pcdf_2.11.0.zip" }, "HsAgilentDesign026652.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)", "org.Hs.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/HsAgilentDesign026652.db_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "744f8f51eb1b6280bd2513f4385e5340", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Agilent Chips that use Agilent design number 026652 annotation data (chip HsAgilentDesign026652)", "source.ver": "src/contrib/HsAgilentDesign026652.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Agilent", "Suggests": [ "annotate", "RUnit" ], "Package": "HsAgilentDesign026652.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AgilentChip", "AnnotationData", "ChipDb", "Homo_sapiens", "HsAgilentDesign026652" ], "Description": "Agilent Chips that use Agilent design number 026652 annotation data (chip HsAgilentDesign026652) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/HsAgilentDesign026652.db_2.8.0.zip" }, "hgu133plus2frmavecs": { "Depends": [ "R (>= 2.10.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hgu133plus2frmavecs_1.1.12.tgz", "Version": "1.1.12", "hasINSTALL": false, "MD5sum": "3dd9b6e46541dc629b95df52e3dd17eb", "Maintainer": "Matthew N. McCall ", "Author": "Matthew N. McCall , Rafael A. Irizarry ", "Title": "Vectors used by frma for microarrays of type hgu133plus2", "source.ver": "src/contrib/hgu133plus2frmavecs_1.1.12.tar.gz", "NeedsCompilation": "no", "Package": "hgu133plus2frmavecs", "License": "GPL (>= 2)", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "hgu133plus2" ], "Description": "This package was created by frmaTools version 1.9.1.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hgu133plus2frmavecs_1.1.12.zip" }, "HuExExonProbesetLocation": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.15.29)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/HuExExonProbesetLocation_1.0.4.tgz", "Version": "1.0.4", "hasINSTALL": false, "MD5sum": "ad1a655bd6127ecb420811092911ce02", "Maintainer": "Raffaele A. Calogero ", "Author": "Raffaele A. Calogero", "Title": "Exon-level probeset chromosome location for microarrays of type HuEx", "suggestsMe": [ "oneChannelGUI" ], "source.ver": "src/contrib/HuExExonProbesetLocation_1.0.4.tar.gz", "NeedsCompilation": "no", "Package": "HuExExonProbesetLocation", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "HuEx" ], "Description": "This package was automatically created by package AnnotationDbi version 1.15.29. The exon-level probeset genome location was retrieved from Netaffx using AffyCompatible. The exon-level probeset genome location was retrieved from Netaffx using AffyCompatible.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/HuExExonProbesetLocation_1.0.4.zip" }, "mogene10stprobeset.db": { "organism": "Mus musculus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.15.34)", "org.Mm.eg.db (>= 2.6.3)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/mogene10stprobeset.db_8.0.1.tgz", "Version": "8.0.1", "hasINSTALL": false, "MD5sum": "f414496b8af3f9ba422ec7ba711a4339", "Maintainer": "Li, Arthur ", "Author": "Arthur Li", "Title": "Affymetrix Mouse Gene 1.0-ST Array Probeset Revision 8 annotation data (chip mogene10stprobeset)", "source.ver": "src/contrib/mogene10stprobeset.db_8.0.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate" ], "Package": "mogene10stprobeset.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "mogene10stprobeset" ], "Description": "Affymetrix Mouse Gene 1.0-ST Array Probeset Revision 8 annotation data (chip mogene10stprobeset) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/mogene10stprobeset.db_8.0.1.zip" }, "mgu74c.db": { "organism": "Mus musculus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.20.2)", "org.Mm.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/mgu74c.db_2.8.1.tgz", "Version": "2.8.1", "hasINSTALL": false, "MD5sum": "be46b093cfe521159a5e1317e07a958e", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Affymetrix Murine Genome U74v2 annotation data (chip mgu74c)", "source.ver": "src/contrib/mgu74c.db_2.8.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate", "RUnit" ], "Package": "mgu74c.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Mus_musculus", "mgu74c" ], "Description": "Affymetrix Murine Genome U74v2 annotation data (chip mgu74c) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/mgu74c.db_2.8.1.zip" }, "pd.rn.u34": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.rn.u34_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "d219f15cbb87d1194287ea4604caef68", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name RN_U34", "source.ver": "src/contrib/pd.rn.u34_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.rn.u34", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name RN_U34", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.rn.u34_1.8.0.zip" }, "hom.Dm.inp.db": { "organism": "Drosophila melanogaster", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hom.Dm.inp.db_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "dcd399f2c28fd34ea783079206dad105", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson, Herve Pages", "Title": "Homology information for Drosophila melanogaster from Inparanoid", "suggestsMe": [ "RpsiXML" ], "source.ver": "src/contrib/hom.Dm.inp.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "Package": "hom.Dm.inp.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Drosophila_melanogaster", "InparanoidDb" ], "Description": "Homology information for Drosophila melanogaster from Inparanoid assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hom.Dm.inp.db_2.8.0.zip" }, "barley1probe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/barley1probe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "5da3d6bf225953f955240d6859a34e9e", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type barley1", "source.ver": "src/contrib/barley1probe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "barley1probe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Hordeum_vulgare", "barley1", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Barley1\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/barley1probe_2.11.0.zip" }, "canine.db0": { "organism": "Canis familiaris", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.1.28)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/canine.db0_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "6faf2c42c3442195031218080b1ec11b", "Maintainer": "Biocore Team c/o BioC user list ", "Author": "Marc Carlson, Herve Pages", "Title": "Base Level Annotation databases for canine", "source.ver": "src/contrib/canine.db0_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "Package": "canine.db0", "License": "The Artistic License, Version 2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Canis_familiaris", "db0" ], "Description": "Base annotation databases for canine, intended ONLY to be used by AnnotationDbi to produce regular annotation packages.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/canine.db0_2.8.0.zip" }, "hu35ksubdcdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hu35ksubdcdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "c0f548e38ba7250bfaaf909b2bee10c1", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "hu35ksubdcdf", "source.ver": "src/contrib/hu35ksubdcdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "hu35ksubdcdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "hu35ksubd" ], "Description": "A package containing an environment representing the Hu35KsubD.CDF file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hu35ksubdcdf_2.11.0.zip" }, "oligoData": { "Depends": [ "R (>= 2.15.0)", "oligo" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/oligoData_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "9625cfd4b31bb575c4029a0632a7ee12", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Dataset samples for the oligo package", "suggestsMe": [ "oligo" ], "source.ver": "src/contrib/oligoData_1.8.0.tar.gz", "NeedsCompilation": "no", "Suggests": [ "pd.hg.u95av2", "pd.huex.1.0.st.v2", "pd.mapping50k.xba240", "pd.hg18.60mer.expr", "pd.2006.07.18.hg18.refseq.promoter", "pd.hugene.1.0.st.v1" ], "Package": "oligoData", "License": "LGPL (>= 2)", "hasREADME": false, "biocViews": [ "AnnotationData", "ExperimentData" ], "Description": "Dataset samples (Affymetrix: Expression, Gene, Exon, SNP; NimbleGen: Expression, Tiling) to be used with the oligo package.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/oligoData_1.8.0.zip" }, "illuminaMousev1.db": { "organism": "Mus musculus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.37)", "org.Mm.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/illuminaMousev1.db_1.16.1.tgz", "Version": "1.16.1", "hasINSTALL": false, "MD5sum": "982981fe1550d403601ac69a17d50ba3", "Maintainer": "Mark Dunning ", "Author": "Mark Dunning, Andy Lynch, Matthew Eldridge", "Title": "Illumina MouseWG6v1 annotation data (chip illuminaMousev1)", "source.ver": "src/contrib/illuminaMousev1.db_1.16.1.tar.gz", "Imports": [ "methods", "AnnotationDbi", "AnnotationForge" ], "NeedsCompilation": "no", "manufacturer": "Illumina", "Suggests": [ "annotate", "RUnit" ], "Package": "illuminaMousev1.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "ChipDb", "IlluminaChip", "Mus_musculus", "illuminaMousev1" ], "Description": "Illumina MouseWG6v1 annotation data (chip illuminaMousev1) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/illuminaMousev1.db_1.16.1.zip" }, "TxDb.Rnorvegicus.UCSC.rn5.refGene": { "organism": "Rattus norvegicus", "Depends": [ "GenomicFeatures (>= 1.9.39)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/TxDb.Rnorvegicus.UCSC.rn5.refGene_2.8.0.tgz", "Version": "2.8.0", "dependsOnMe": [ "Rattus.norvegicus" ], "hasINSTALL": false, "MD5sum": "5d3bc35e8fb73ba2595c3d3d83995f76", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Annotation package for TranscriptDb object(s)", "source.ver": "src/contrib/TxDb.Rnorvegicus.UCSC.rn5.refGene_2.8.0.tar.gz", "Imports": [ "GenomicFeatures", "AnnotationDbi" ], "NeedsCompilation": "no", "Package": "TxDb.Rnorvegicus.UCSC.rn5.refGene", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Genetics", "Rattus_norvegicus", "TranscriptDb" ], "Description": "Exposes an annotation databases generated from UCSC by exposing these as TranscriptDb objects", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/TxDb.Rnorvegicus.UCSC.rn5.refGene_2.8.0.zip" }, "org.Sco.eg.db": { "organism": "Streptomyces coelicolor", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.9.7)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/org.Sco.eg.db_2.4.2.tgz", "Version": "2.4.2", "hasINSTALL": false, "MD5sum": "21d66935277a2853080721e267612cf5", "Maintainer": "Roxane Legaie ", "Author": "Roxanne Legaie", "Title": "Genome wide annotation for Streptomyces coelicolor", "source.ver": "src/contrib/org.Sco.eg.db_2.4.2.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "Suggests": [ "annotate" ], "Package": "org.Sco.eg.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Streptomyces_coelicolor" ], "Description": "Genome wide annotation for Streptomyces coelicolor, primarily based on mapping using Entrez Gene identifiers.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/org.Sco.eg.db_2.4.2.zip" }, "genomewidesnp6Crlmm": { "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/genomewidesnp6Crlmm_1.0.7.tgz", "Version": "1.0.7", "hasINSTALL": false, "MD5sum": "13dd5aef3d814524896f2f3013beb78b", "Maintainer": "Benilton S Carvalho , Robert Scharpf ", "Author": "Benilton S Carvalho", "Title": "Metadata for fast genotyping with the 'crlmm' package", "suggestsMe": [ "crlmm", "oligoClasses", "VanillaICE" ], "source.ver": "src/contrib/genomewidesnp6Crlmm_1.0.7.tar.gz", "Imports": [ "utils" ], "NeedsCompilation": "no", "Package": "genomewidesnp6Crlmm", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Package with metadata for fast genotyping Affymetrix GenomeWideSnp_6 arrays using the 'crlmm' package.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/genomewidesnp6Crlmm_1.0.7.zip" }, "mogene11stprobeset.db": { "organism": "Mus musculus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.15.34)", "org.Mm.eg.db (>= 2.6.3)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/mogene11stprobeset.db_4.0.1.tgz", "Version": "4.0.1", "hasINSTALL": false, "MD5sum": "5986f05f84a33865ad4d42fc603f248a", "Maintainer": "Li, Arthur ", "Author": "Arthur Li", "Title": "Affymetrix Mouse Gene 1.1-ST Array Probeset Revision 4 annotation data (chip mogene11stprobeset)", "source.ver": "src/contrib/mogene11stprobeset.db_4.0.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate" ], "Package": "mogene11stprobeset.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "mogene11stprobeset" ], "Description": "Affymetrix Mouse Gene 1.1-ST Array Probeset Revision 4 annotation data (chip mogene11stprobeset) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/mogene11stprobeset.db_4.0.1.zip" }, "malaria.db0": { "organism": "Plasmodium falciparum", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.1.28)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/malaria.db0_2.8.1.tgz", "Version": "2.8.1", "hasINSTALL": false, "MD5sum": "15ef52bb31d52ad35155a9d8238d0f8d", "Maintainer": "Biocore Team c/o BioC user list ", "Author": "Marc Carlson, Herve Pages", "Title": "Base Level Annotation databases for malaria", "source.ver": "src/contrib/malaria.db0_2.8.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "Package": "malaria.db0", "License": "The Artistic License, Version 2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Plasmodium_falciparum", "db0" ], "Description": "Base annotation databases for malaria, intended ONLY to be used by AnnotationDbi to produce regular annotation packages.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/malaria.db0_2.8.1.zip" }, "yeast2cdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/yeast2cdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "b918860da7dfc9f6ac9c2a4ea7189c64", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "yeast2cdf", "source.ver": "src/contrib/yeast2cdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "yeast2cdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Saccharomyces_cerevisiae", "cdf", "yeast2" ], "Description": "A package containing an environment representing the Yeast_2.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/yeast2cdf_2.11.0.zip" }, "ricecdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/ricecdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "1449b70924f8630ccf3cf60601f46e64", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "ricecdf", "source.ver": "src/contrib/ricecdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "ricecdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Oryza_sp", "cdf", "rice" ], "Description": "A package containing an environment representing the Rice.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/ricecdf_2.11.0.zip" }, "rattoxfxcdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/rattoxfxcdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "3c1bf305241083a758bb639c6a5b0d33", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "rattoxfxcdf", "source.ver": "src/contrib/rattoxfxcdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "rattoxfxcdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Rattus_norvegicus", "cdf", "rattoxfx" ], "Description": "A package containing an environment representing the RatToxFX.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/rattoxfxcdf_2.11.0.zip" }, "bovine.db0": { "organism": "Bos taurus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.1.28)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/bovine.db0_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "c1a5158d39868f9f6d52794461f87f1f", "Maintainer": "Biocore Team c/o BioC user list ", "Author": "Marc Carlson, Herve Pages", "Title": "Base Level Annotation databases for bovine", "source.ver": "src/contrib/bovine.db0_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "Package": "bovine.db0", "License": "The Artistic License, Version 2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Bos_taurus", "db0" ], "Description": "Base annotation databases for bovine, intended ONLY to be used by AnnotationDbi to produce regular annotation packages.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/bovine.db0_2.8.0.zip" }, "u133aaofav2cdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/u133aaofav2cdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "1c7e6ebb3bbedbbeffae7e14a94e0d18", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "u133aaofav2cdf", "source.ver": "src/contrib/u133aaofav2cdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "u133aaofav2cdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "u133aaofav2" ], "Description": "A package containing an environment representing the U133AAofAv2.CDF file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/u133aaofav2cdf_2.11.0.zip" }, "mu11ksubbcdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/mu11ksubbcdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "fa9102ad4718d00496d65e74aee3c8de", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "mu11ksubbcdf", "source.ver": "src/contrib/mu11ksubbcdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "mu11ksubbcdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "cdf", "mu11ksubb" ], "Description": "A package containing an environment representing the Mu11KsubB.CDF file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/mu11ksubbcdf_2.11.0.zip" }, "adme16cod.db": { "organism": "Rattus norvegicus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.40)", "org.Hs.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/adme16cod.db_2.14.0.tgz", "Version": "2.14.0", "hasINSTALL": false, "MD5sum": "2d058e3fe26a268d09c1ad9b13189265", "Maintainer": "Diego Diez ", "Author": "Diego Diez", "Title": "GE CodeLink ADME Rat 16-Assay Bioarray annotation data (chip adme16cod)", "source.ver": "src/contrib/adme16cod.db_2.14.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "GE", "Suggests": [ "annotate", "RUnit" ], "Package": "adme16cod.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "ChipDb", "GEChip", "Rattus_norvegicus", "adme16cod" ], "Description": "GE CodeLink ADME Rat 16-Assay Bioarray annotation data (chip adme16cod) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/adme16cod.db_2.14.0.zip" }, "org.At.tair.db": { "organism": "Arabidopsis thaliana", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/org.At.tair.db_2.8.0.tgz", "Version": "2.8.0", "dependsOnMe": [ "ag.db", "ath1121501.db" ], "hasINSTALL": false, "MD5sum": "05a3508fe3f9a61ea074d9e80450a676", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Genome wide annotation for Arabidopsis", "suggestsMe": [ "AnnotationDbi" ], "source.ver": "src/contrib/org.At.tair.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "Suggests": [ "annotate", "RUnit" ], "Package": "org.At.tair.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Arabidopsis_thaliana", "OrgDb" ], "Description": "Genome wide annotation for Arabidopsis, primarily based on mapping using TAIR identifiers.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/org.At.tair.db_2.8.0.zip" }, "TxDb.Hsapiens.UCSC.hg19.knownGene": { "organism": "Homo sapiens", "Depends": [ "GenomicFeatures (>= 1.9.39)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/TxDb.Hsapiens.UCSC.hg19.knownGene_2.8.0.tgz", "Version": "2.8.0", "dependsOnMe": [ "FunciSNP", "Homo.sapiens" ], "hasINSTALL": false, "MD5sum": "61eadd123cc453863e96934b4a621053", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Annotation package for TranscriptDb object(s)", "suggestsMe": [ "AnnotationDbi", "biovizBase", "bumphunter", "FDb.InfiniumMethylation.hg19", "GenomicFeatures", "ggbio", "gmapR", "rtracklayer", "VariantAnnotation" ], "source.ver": "src/contrib/TxDb.Hsapiens.UCSC.hg19.knownGene_2.8.0.tar.gz", "Imports": [ "GenomicFeatures", "AnnotationDbi" ], "NeedsCompilation": "no", "Package": "TxDb.Hsapiens.UCSC.hg19.knownGene", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Genetics", "Homo_sapiens", "TranscriptDb" ], "Description": "Exposes an annotation databases generated from UCSC by exposing these as TranscriptDb objects", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/TxDb.Hsapiens.UCSC.hg19.knownGene_2.8.0.zip" }, "r10kcod.db": { "organism": "Rattus norvegicus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.40)", "org.Hs.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/r10kcod.db_2.14.0.tgz", "Version": "2.14.0", "hasINSTALL": false, "MD5sum": "4fd0808936643c2a620472dfbb8bb4bb", "Maintainer": "Diego Diez ", "Author": "Diego Diez", "Title": "GE CodeLink UniSet Rat I Bioarray (~10 000 rat gene targets) annotation data (chip r10kcod)", "source.ver": "src/contrib/r10kcod.db_2.14.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "GE", "Suggests": [ "annotate", "RUnit" ], "Package": "r10kcod.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "ChipDb", "GEChip", "Rattus_norvegicus", "r10kcod" ], "Description": "GE CodeLink UniSet Rat I Bioarray (~10 000 rat gene targets) annotation data (chip r10kcod) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/r10kcod.db_2.14.0.zip" }, "hs25kresogen.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.13.19)", "org.Hs.eg.db (>= 2.5.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hs25kresogen.db_2.5.0.tgz", "Version": "2.5.0", "hasINSTALL": false, "MD5sum": "a3800d072ce0e5f6f5d8299538b99cca", "Maintainer": "Simon de Bernard ", "Author": "AltraBio", "Title": "RNG_MRC Human Pangenomic 25k Set annotation data (chip hs25kresogen)", "source.ver": "src/contrib/hs25kresogen.db_2.5.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "RNG_MRC", "Suggests": [ "annotate" ], "Package": "hs25kresogen.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Homo_sapiens", "RNG_MRCChip", "hs25kresogen" ], "Description": "RNG_MRC Human Pangenomic 25k Set annotation data (chip hs25kresogen) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hs25kresogen.db_2.5.0.zip" }, "hgfocuscdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hgfocuscdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "be087fefa74a1303a442edf846029fb6", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "hgfocuscdf", "suggestsMe": [ "affycoretools" ], "source.ver": "src/contrib/hgfocuscdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "hgfocuscdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "hgfocus" ], "Description": "A package containing an environment representing the HG-Focus.CDF file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hgfocuscdf_2.11.0.zip" }, "hom.Rn.inp.db": { "organism": "Rattus norvegicus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hom.Rn.inp.db_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "81402a506a2bc76eb101d2ef1054a561", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson, Herve Pages", "Title": "Homology information for Rattus norvegicus from Inparanoid", "suggestsMe": [ "RpsiXML" ], "source.ver": "src/contrib/hom.Rn.inp.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "Package": "hom.Rn.inp.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "InparanoidDb", "Rattus_norvegicus" ], "Description": "Homology information for Rattus norvegicus from Inparanoid assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hom.Rn.inp.db_2.8.0.zip" }, "tomatoprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/tomatoprobe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "5ff7ade80e1d9df6baf31e154e55c7ba", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type tomato", "source.ver": "src/contrib/tomatoprobe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "tomatoprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Solanum_lycopersicum", "probe", "tomato" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Tomato\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/tomatoprobe_2.11.0.zip" }, "saureuscdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/saureuscdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "a78e528bc38d832f8cd13c7b1a3866fa", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "saureuscdf", "source.ver": "src/contrib/saureuscdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "saureuscdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Staphylococcus_aureus", "cdf", "saureus" ], "Description": "A package containing an environment representing the S_aureus.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/saureuscdf_2.11.0.zip" }, "rattoxfxprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/rattoxfxprobe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "9eefe8eb0a48e9cfe4aaa098d4355c40", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type rattoxfx", "source.ver": "src/contrib/rattoxfxprobe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "rattoxfxprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Rattus_norvegicus", "probe", "rattoxfx" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was RatToxFX\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/rattoxfxprobe_2.11.0.zip" }, "ragene11sttranscriptcluster.db": { "organism": "Rattus norvegicus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.15.34)", "org.Rn.eg.db (>= 2.6.3)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/ragene11sttranscriptcluster.db_4.0.1.tgz", "Version": "4.0.1", "hasINSTALL": false, "MD5sum": "74816aa167cd59a012ba997ee6408c53", "Maintainer": "Li, Arthur ", "Author": "Arthur Li", "Title": "Affymetrix Rat Gene 1.1-ST Array Transcriptcluster Revision 4 annotation data (chip ragene11sttranscriptcluster)", "source.ver": "src/contrib/ragene11sttranscriptcluster.db_4.0.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate" ], "Package": "ragene11sttranscriptcluster.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Rattus_norvegicus", "ragene11sttranscriptcluster" ], "Description": "Affymetrix Rat Gene 1.1-ST Array Transcriptcluster Revision 4 annotation data (chip ragene11sttranscriptcluster) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/ragene11sttranscriptcluster.db_4.0.1.zip" }, "pd.ht.hg.u133.plus.pm": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.ht.hg.u133.plus.pm_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "c95edae86215fa38b6f617a7cb3c9eac", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name HT_HG-U133_Plus_PM", "source.ver": "src/contrib/pd.ht.hg.u133.plus.pm_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.ht.hg.u133.plus.pm", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name HT_HG-U133_Plus_PM", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.ht.hg.u133.plus.pm_1.8.0.zip" }, "mgug4104a.db": { "organism": "Mus musculus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.20.2)", "org.Mm.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/mgug4104a.db_2.8.1.tgz", "Version": "2.8.1", "hasINSTALL": false, "MD5sum": "1da52fc6d457a6541e735fc0f637238a", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Agilent annotation data (chip mgug4104a)", "source.ver": "src/contrib/mgug4104a.db_2.8.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Agilent", "Suggests": [ "annotate", "RUnit" ], "Package": "mgug4104a.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AgilentChip", "AnnotationData", "ChipDb", "Mus_musculus", "mgug4104a" ], "Description": "Agilent annotation data (chip mgug4104a) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/mgug4104a.db_2.8.1.zip" }, "hugene10sttranscriptcluster.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.15.34)", "org.Hs.eg.db (>= 2.6.3)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hugene10sttranscriptcluster.db_8.0.1.tgz", "Version": "8.0.1", "hasINSTALL": false, "MD5sum": "0912770ecdce59ff8cd7e6116e5f2f3c", "Maintainer": "Li, Arthur ", "Author": "Arthur Li", "Title": "Affymetrix Human Gene 1.0-ST Array Transcriptcluster Revision 8 annotation data (chip hugene10sttranscriptcluster)", "suggestsMe": [ "ArrayTools", "oneChannelGUI", "pcaGoPromoter" ], "source.ver": "src/contrib/hugene10sttranscriptcluster.db_8.0.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate" ], "Package": "hugene10sttranscriptcluster.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "hugene10sttranscriptcluster" ], "Description": "Affymetrix Human Gene 1.0-ST Array Transcriptcluster Revision 8 annotation data (chip hugene10sttranscriptcluster) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hugene10sttranscriptcluster.db_8.0.1.zip" }, "org.Sc.sgd.db": { "organism": "Saccharomyces cerevisiae", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/org.Sc.sgd.db_2.8.0.tgz", "Version": "2.8.0", "dependsOnMe": [ "LiquidAssociation", "yeast2.db", "ygs98.db" ], "hasINSTALL": false, "MD5sum": "1200ccac39857b2bd18ce9e12d34b1d4", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Genome wide annotation for Yeast", "suggestsMe": [ "AnnotationDbi", "Category", "GenomicRanges", "PCpheno", "ppiData", "SLGI", "yeastExpData" ], "source.ver": "src/contrib/org.Sc.sgd.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "Suggests": [ "annotate", "RUnit" ], "Package": "org.Sc.sgd.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "OrgDb", "Saccharomyces_cerevisiae" ], "Description": "Genome wide annotation for Yeast, primarily based on mapping using ORF identifiers from SGD.", "hasLICENSE": false, "importsMe": [ "apComplex", "ScISI" ], "win.binary.ver": "bin/windows/contrib/2.16/org.Sc.sgd.db_2.8.0.zip" }, "arabidopsis.db0": { "organism": "Arabidopsis thaliana", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.1.15)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/arabidopsis.db0_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "5d6114b6b49ba94fef9bf0590c1f2d0a", "Maintainer": "Biocore Team c/o BioC user list ", "Author": "Marc Carlson, Nianhua Li, Herve Pages", "Title": "Base Level Annotation databases for arabidopsis", "source.ver": "src/contrib/arabidopsis.db0_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "Package": "arabidopsis.db0", "License": "The Artistic License, Version 2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Arabidopsis_thaliana", "db0" ], "Description": "Base annotation databases for arabidopsis, intended ONLY to be used by AnnotationDbi to produce regular annotation packages.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/arabidopsis.db0_2.8.0.zip" }, "hgu133atagcdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hgu133atagcdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "bbda8333990d6e9cb8bfe90c6edcc5ce", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "hgu133atagcdf", "suggestsMe": [ "arrayMvout", "frmaTools" ], "source.ver": "src/contrib/hgu133atagcdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "hgu133atagcdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "hgu133atag" ], "Description": "A package containing an environment representing the HG-U133A_tag.CDF file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hgu133atagcdf_2.11.0.zip" }, "BSgenome.Mmulatta.UCSC.rheMac2": { "organism": "Macaca mulatta", "Depends": [ "BSgenome (>= 1.23.5)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/BSgenome.Mmulatta.UCSC.rheMac2_1.3.17.tgz", "Version": "1.3.17", "hasINSTALL": false, "MD5sum": "4a62e6373012f192c6f9a7eda53632c6", "Maintainer": "Bioconductor Package Maintainer ", "Author": "The Bioconductor Dev Team", "Title": "Macaca mulatta (Rhesus) full genome (UCSC version rheMac2)", "source.ver": "src/contrib/BSgenome.Mmulatta.UCSC.rheMac2_1.3.17.tar.gz", "Imports": [ "BSgenome" ], "NeedsCompilation": "no", "Package": "BSgenome.Mmulatta.UCSC.rheMac2", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Genetics", "Macaca_mulatta" ], "Description": "Macaca mulatta (Rhesus) full genome as provided by UCSC (rheMac2, Jan. 2006) and stored in Biostrings objects. NOTE: In most assemblies available at UCSC, Tandem Repeats Finder repeats were filtered to retain only the repeats with period <= 12. However, the filtering was omitted for this assembly, so the TRF masks contain all Tandem Repeats Finder results.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/BSgenome.Mmulatta.UCSC.rheMac2_1.3.17.zip" }, "medicagoprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/medicagoprobe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "f5803233b134ab5d358c7856c5c64a60", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type medicago", "source.ver": "src/contrib/medicagoprobe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "medicagoprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Medicago_trunculata", "medicago", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Medicago\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/medicagoprobe_2.11.0.zip" }, "hgu133a.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)", "org.Hs.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hgu133a.db_2.8.0.tgz", "Version": "2.8.0", "dependsOnMe": [ "GeneGroupAnalysis", "Neve2006" ], "hasINSTALL": false, "MD5sum": "eecc0ee117196de4c98b7ceb012cd824", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Affymetrix Human Genome U133 Set annotation data (chip hgu133a)", "suggestsMe": [ "altcdfenvs", "BiocCaseStudies", "geneplotter", "goTools", "sigPathway", "topGO" ], "source.ver": "src/contrib/hgu133a.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate", "RUnit" ], "Package": "hgu133a.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Homo_sapiens", "hgu133a" ], "Description": "Affymetrix Human Genome U133 Set annotation data (chip hgu133a) assembled using data from public repositories", "hasLICENSE": false, "importsMe": [ "PADOG", "phenoTest" ], "win.binary.ver": "bin/windows/contrib/2.16/hgu133a.db_2.8.0.zip" }, "nugomm1a520177.db": { "organism": "Mus musculus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.37)", "org.Mm.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/nugomm1a520177.db_2.6.1.tgz", "Version": "2.6.1", "hasINSTALL": false, "MD5sum": "c9dfaf147673affcb750ce26aad2a827", "Maintainer": "Philip de Groot ", "Author": "Philip de Groot", "Title": "Affymetrix nugomm1a520177 annotation data (chip nugomm1a520177)", "source.ver": "src/contrib/nugomm1a520177.db_2.6.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate", "RUnit" ], "Package": "nugomm1a520177.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Mus_musculus", "nugomm1a520177" ], "Description": "Affymetrix nugomm1a520177 annotation data (chip nugomm1a520177) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/nugomm1a520177.db_2.6.1.zip" }, "org.Hs.eg.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/org.Hs.eg.db_2.8.0.tgz", "Version": "2.8.0", "dependsOnMe": [ "adme16cod.db", "AnnotationForge", "ChIPpeakAnno", "CoCiteStats", "GGHumanMethCancerPanelv1.db", "h10kcod.db", "h20kcod.db", "hcg110.db", "hgfocus.db", "hgu133a.db", "hgu133a2.db", "hgu133b.db", "hgu133plus2.db", "hgu219.db", "hgu95a.db", "hgu95av2.db", "hgu95b.db", "hgu95c.db", "hgu95d.db", "hgu95e.db", "hguatlas13k.db", "hgubeta7.db", "hguDKFZ31.db", "hgug4100a.db", "hgug4101a.db", "hgug4110b.db", "hgug4111a.db", "hgug4112a.db", "hgug4845a.db", "hguqiagenv3.db", "hi16cod.db", "Homo.sapiens", "hs25kresogen.db", "Hs6UG171.db", "HsAgilentDesign026652.db", "hthgu133a.db", "hthgu133b.db", "hu35ksuba.db", "hu35ksubb.db", "hu35ksubc.db", "hu35ksubd.db", "hu6800.db", "hugene10stprobeset.db", "hugene10sttranscriptcluster.db", "hugene11stprobeset.db", "hugene11sttranscriptcluster.db", "HuO22.db", "hwgcod.db", "IlluminaHumanMethylation27k.db", "IlluminaHumanMethylation450k.db", "illuminaHumanv1.db", "illuminaHumanv2.db", "illuminaHumanv2BeadID.db", "illuminaHumanv3.db", "illuminaHumanv4.db", "illuminaHumanWGDASLv3.db", "illuminaHumanWGDASLv4.db", "JazaeriMetaData.db", "LAPOINTE.db", "lumiHumanAll.db", "m10kcod.db", "m20kcod.db", "mi16cod.db", "Mulder2012", "mwgcod.db", "Norway981.db", "nugohs1a520180.db", "OperonHumanV3.db", "PartheenMetaData.db", "pedbarrayv10.db", "pedbarrayv9.db", "POCRCannotation.db", "porcine.db", "r10kcod.db", "ri16cod.db", "Roberts2005Annotation.db", "rwgcod.db", "SHDZ.db", "u133x3p.db" ], "hasINSTALL": false, "MD5sum": "1894f06a4393fee73571915477e5aed4", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Genome wide annotation for Human", "suggestsMe": [ "annotate", "AnnotationDbi", "AnnotationFuncs", "BiocCaseStudies", "bumphunter", "categoryCompare", "cnvGSA", "eisa", "gage", "GeneAnswers", "globaltest", "gmapR", "goProfiles", "goseq", "GOstats", "GSEABase", "hpar", "HTSanalyzeR", "ind1KG", "KEGGgraph", "limma", "MLP", "oneChannelGUI", "PGSEA", "ReactomePA", "RforProteomics", "RpsiXML", "RTopper", "rtracklayer", "virtualArray" ], "source.ver": "src/contrib/org.Hs.eg.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "Suggests": [ "annotate", "RUnit" ], "Package": "org.Hs.eg.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Homo_sapiens", "OrgDb", "humanLLMappings" ], "Description": "Genome wide annotation for Human, primarily based on mapping using Entrez Gene identifiers.", "hasLICENSE": false, "importsMe": [ "clusterProfiler", "DOSE", "FunciSNP", "GOSemSim", "graphite" ], "win.binary.ver": "bin/windows/contrib/2.16/org.Hs.eg.db_2.8.0.zip" }, "mirna102xgaincdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/mirna102xgaincdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "d4a44ad24ab6b0585135bf6769056d02", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "mirna102xgaincdf", "source.ver": "src/contrib/mirna102xgaincdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "mirna102xgaincdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "mirna102xgain" ], "Description": "A package containing an environment representing the miRNA-1_0_2Xgain.CDF file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/mirna102xgaincdf_2.11.0.zip" }, "nugomm1a520177probe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/nugomm1a520177probe_2.6.0.tgz", "Version": "2.6.0", "hasINSTALL": false, "MD5sum": "91a1b8f49310f07e6eb0830c4a7affe6", "Maintainer": "Philip de Groot ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type nugomm1a520177", "source.ver": "src/contrib/nugomm1a520177probe_2.6.0.tar.gz", "NeedsCompilation": "no", "Package": "nugomm1a520177probe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "nugomm1a520177", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/nugomm1a520177probe_2.6.0.zip" }, "hu6800subccdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hu6800subccdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "7c3fbd62708c0a6ff8a27ad632d9c545", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "hu6800subccdf", "source.ver": "src/contrib/hu6800subccdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "hu6800subccdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "hu6800subc" ], "Description": "A package containing an environment representing the Hu6800subC.CDF file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hu6800subccdf_2.11.0.zip" }, "hthgu133b.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)", "org.Hs.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hthgu133b.db_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "b328ceaf032f2c3bccb53215ce7a256e", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Affymetrix HT Human Genome U133 Array Plate Set annotation data (chip hthgu133b)", "source.ver": "src/contrib/hthgu133b.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate", "RUnit" ], "Package": "hthgu133b.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Homo_sapiens", "hthgu133b" ], "Description": "Affymetrix HT Human Genome U133 Array Plate Set annotation data (chip hthgu133b) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hthgu133b.db_2.8.0.zip" }, "zebrafish.db0": { "organism": "Danio rerio", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.1.28)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/zebrafish.db0_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "6547275f84d6519cedfc01e09937964a", "Maintainer": "Biocore Team c/o BioC user list ", "Author": "Marc Carlson, Herve Pages", "Title": "Base Level Annotation databases for zebrafish", "source.ver": "src/contrib/zebrafish.db0_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "Package": "zebrafish.db0", "License": "The Artistic License, Version 2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Danio_rerio", "db0" ], "Description": "Base annotation databases for zebrafish, intended ONLY to be used by AnnotationDbi to produce regular annotation packages.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/zebrafish.db0_2.8.0.zip" }, "pd.hg.u95av2": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.hg.u95av2_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "f8597ac0bff92f8109ad75ea8abed6c1", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name HG_U95Av2", "suggestsMe": [ "oligoData" ], "source.ver": "src/contrib/pd.hg.u95av2_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.hg.u95av2", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name HG_U95Av2", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.hg.u95av2_1.8.0.zip" }, "hom.Dr.inp.db": { "organism": "Danio rerio", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hom.Dr.inp.db_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "bc8878253aa177715c374f3c71a3cd1a", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson, Herve Pages", "Title": "Homology information for Danio rerio from Inparanoid", "source.ver": "src/contrib/hom.Dr.inp.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "Package": "hom.Dr.inp.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Danio_rerio", "InparanoidDb" ], "Description": "Homology information for Danio rerio from Inparanoid assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hom.Dr.inp.db_2.8.0.zip" }, "mirna10cdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/mirna10cdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "207db11d0da3206a560b77bb882b94fd", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "mirna10cdf", "source.ver": "src/contrib/mirna10cdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "mirna10cdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "mirna10" ], "Description": "A package containing an environment representing the miRNA-1_0.CDF file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/mirna10cdf_2.11.0.zip" }, "gahgu95b.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.5.24)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/gahgu95b.db_2.2.0.tgz", "Version": "2.2.0", "hasINSTALL": false, "MD5sum": "8f37e5896f06d7a2b916f25f1f862e7d", "Maintainer": "Francesco Ferrari ", "Author": "Francesco Ferrari, Stefania Bortoluzzi, Alessandro Coppe, Alexandra Sirota, Marilyn Safran, Michael Shmoish, Sergio Ferrari, Doron Lancet, Gian Antonio Danieli and Silvio Bicciato", "Title": "Genecards derived annotations for gahgu95b custom probeset definitions", "source.ver": "src/contrib/gahgu95b.db_2.2.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Package": "gahgu95b.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "GeneCardsCustomSchema" ], "Description": "Genecards derived annotations for gahgu95b custom probeset definitions assembled using data from the GeneCards database (www.genecards.org)", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/gahgu95b.db_2.2.0.zip" }, "u133x3pprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/u133x3pprobe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "a6126976b561a1aea903c7f7052e24c2", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type u133x3p", "source.ver": "src/contrib/u133x3pprobe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "u133x3pprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "probe", "u133x3p" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was U133\\_X3P\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/u133x3pprobe_2.11.0.zip" }, "saureusprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/saureusprobe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "e14c75722088840d60e5147100b2062a", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type saureus", "source.ver": "src/contrib/saureusprobe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "saureusprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Staphylococcus_aureus", "probe", "saureus" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was S\\_aureus\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/saureusprobe_2.11.0.zip" }, "pd.soybean": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.soybean_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "c11cb02f017090b4c8adf76c013e5cfb", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name Soybean", "source.ver": "src/contrib/pd.soybean_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.soybean", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name Soybean", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.soybean_1.8.0.zip" }, "mirbase.db": { "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.18.1)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/mirbase.db_1.1.0.tgz", "Version": "1.1.0", "hasINSTALL": false, "MD5sum": "37c48b34a15e6ea4a6e9827c5b123f8c", "Maintainer": "James F. Reid ", "Author": "James F. Reid ", "Title": "miRBase: the microRNA database", "suggestsMe": [ "GenomicFeatures" ], "source.ver": "src/contrib/mirbase.db_1.1.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "Package": "mirbase.db", "License": "file LICENSE", "hasREADME": false, "biocViews": [ "AnnotationData", "FunctionalAnnotation" ], "Description": "miRBase: the microRNA database assembled using data from miRBase (http://www.mirbase.org/).", "hasLICENSE": true, "win.binary.ver": "bin/windows/contrib/2.16/mirbase.db_1.1.0.zip" }, "mouse4302probe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/mouse4302probe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "cdff6abf2a1c16dd5567cca3aed4d3fa", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type mouse4302", "source.ver": "src/contrib/mouse4302probe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "mouse4302probe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "mouse4302", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Mouse430\\_2\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/mouse4302probe_2.11.0.zip" }, "hugene10stv1probe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hugene10stv1probe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "cdc775f0396673a912ab127e80ac5130", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type hugene10stv1", "source.ver": "src/contrib/hugene10stv1probe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "hugene10stv1probe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "hugene10stv1", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HuGene-1\\_0-st-v1\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hugene10stv1probe_2.11.0.zip" }, "sugarcaneprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/sugarcaneprobe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "422910f41bfe21dd2243d5fcb396edb3", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type sugarcane", "source.ver": "src/contrib/sugarcaneprobe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "sugarcaneprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Saccharum_officinarum", "probe", "sugarcane" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Sugar\\_Cane\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/sugarcaneprobe_2.11.0.zip" }, "pd.moe430a": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.moe430a_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "6f2d94bd7ebc44f1140f599f80de6fd1", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name MOE430A", "source.ver": "src/contrib/pd.moe430a_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.moe430a", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name MOE430A", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.moe430a_1.8.0.zip" }, "pd.mapping50k.xba240": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.mapping50k.xba240_1.8.0.tgz", "Version": "1.8.0", "dependsOnMe": [ "ITALICS" ], "hasINSTALL": false, "MD5sum": "0be838481ab243ec4b341527bc27c1eb", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for Affymetrix Mapping50K_Xba240", "suggestsMe": [ "oligo", "oligoClasses", "oligoData" ], "source.ver": "src/contrib/pd.mapping50k.xba240_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.mapping50k.xba240", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for Affymetrix Mapping50K_Xba240", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.mapping50k.xba240_1.8.0.zip" }, "mgu74bv2.db": { "organism": "Mus musculus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.20.2)", "org.Mm.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/mgu74bv2.db_2.8.1.tgz", "Version": "2.8.1", "hasINSTALL": false, "MD5sum": "c480185e373e75f4c0fd4e13f55acbb0", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Affymetrix Murine Genome U74v2 annotation data (chip mgu74bv2)", "source.ver": "src/contrib/mgu74bv2.db_2.8.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate", "RUnit" ], "Package": "mgu74bv2.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Mus_musculus", "mgu74bv2" ], "Description": "Affymetrix Murine Genome U74v2 annotation data (chip mgu74bv2) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/mgu74bv2.db_2.8.1.zip" }, "BSgenome.Ecoli.NCBI.20080805": { "organism": "Escherichia coli", "Depends": [ "BSgenome (>= 1.19.2)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/BSgenome.Ecoli.NCBI.20080805_1.3.17.tgz", "Version": "1.3.17", "dependsOnMe": [ "ChIPpeakAnno" ], "hasINSTALL": false, "MD5sum": "4d161519c43130cd916583d5f68982e8", "Maintainer": "Biocore Team c/o BioC user list ", "Author": "H. Pages", "Title": "Escherichia coli full genomes", "source.ver": "src/contrib/BSgenome.Ecoli.NCBI.20080805_1.3.17.tar.gz", "Imports": [ "BSgenome" ], "NeedsCompilation": "no", "Package": "BSgenome.Ecoli.NCBI.20080805", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Escherichia_coli", "Genetics" ], "Description": "Escherichia coli full genomes for several strains as provided by NCBI on 2008/08/05 and stored in Biostrings objects.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/BSgenome.Ecoli.NCBI.20080805_1.3.17.zip" }, "ye6100subbcdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/ye6100subbcdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "6f321656c08418a37feb0f64ddcf8950", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "ye6100subbcdf", "source.ver": "src/contrib/ye6100subbcdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "ye6100subbcdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Saccharomyces_cerevisiae", "cdf", "ye6100subb" ], "Description": "A package containing an environment representing the Ye6100subB.CDF file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/ye6100subbcdf_2.11.0.zip" }, "test3probe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/test3probe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "0e38831c0034e73e81dde10892b738b3", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type test3", "source.ver": "src/contrib/test3probe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "test3probe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "probe", "test3" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Test3\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/test3probe_2.11.0.zip" }, "SIFT.Hsapiens.dbSNP132": { "organism": "Homo sapiens", "Depends": [ "VariantAnnotation", "RSQLite (>= 0.11.0)" ], "hasNEWS": true, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/SIFT.Hsapiens.dbSNP132_1.0.2.tgz", "Version": "1.0.2", "hasINSTALL": false, "MD5sum": "c374f0bf4c99357cfe99e0b192c00d75", "Maintainer": "Valerie Obenchain ", "Author": "Valerie Obenchain", "Title": "SIFT Predictions for Homo sapiens dbSNP build 132", "suggestsMe": [ "VariantAnnotation" ], "source.ver": "src/contrib/SIFT.Hsapiens.dbSNP132_1.0.2.tar.gz", "Imports": [ "AnnotationDbi" ], "NeedsCompilation": "no", "Package": "SIFT.Hsapiens.dbSNP132", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Genetics", "Homo_sapiens" ], "Description": "Database of SIFT predictions for Homo sapiens dbSNP build 132", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/SIFT.Hsapiens.dbSNP132_1.0.2.zip" }, "pd.ovigene.1.0.st": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.ovigene.1.0.st_3.8.0.tgz", "Version": "3.8.0", "hasINSTALL": false, "MD5sum": "7aab7c68ae624edce2b8cb9ee9abfab8", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for Affymetrix OviGene-1_0-st", "source.ver": "src/contrib/pd.ovigene.1.0.st_3.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.ovigene.1.0.st", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for Affymetrix OviGene-1_0-st", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.ovigene.1.0.st_3.8.0.zip" }, "pd.moe430b": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.moe430b_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "c41f46f594ba090fc3dcdf9bb32b2c9f", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name MOE430B", "source.ver": "src/contrib/pd.moe430b_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.moe430b", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name MOE430B", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.moe430b_1.8.0.zip" }, "pd.hg.focus": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.hg.focus_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "d407357cbb5c5e6fca0afb793258d853", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name HG-Focus", "source.ver": "src/contrib/pd.hg.focus_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.hg.focus", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name HG-Focus", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.hg.focus_1.8.0.zip" }, "pd.drosophila.2": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.drosophila.2_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "5a65813e7767ae30974cbe485d3958fd", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name Drosophila_2", "source.ver": "src/contrib/pd.drosophila.2_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.drosophila.2", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name Drosophila_2", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.drosophila.2_1.8.0.zip" }, "moe430a.db": { "organism": "Mus musculus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.20.2)", "org.Mm.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/moe430a.db_2.8.1.tgz", "Version": "2.8.1", "hasINSTALL": false, "MD5sum": "0e0cfb37306c7ff5c3f4098684ee4034", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Affymetrix Mouse Expression Set 430 annotation data (chip moe430a)", "source.ver": "src/contrib/moe430a.db_2.8.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate", "RUnit" ], "Package": "moe430a.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Mus_musculus", "moe430a" ], "Description": "Affymetrix Mouse Expression Set 430 annotation data (chip moe430a) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/moe430a.db_2.8.1.zip" }, "wheatprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/wheatprobe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "3a2571f723373596d0be803c61afc739", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type wheat", "source.ver": "src/contrib/wheatprobe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "wheatprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "Aegilops_tauschii", "AffymetrixChip", "AnnotationData", "Triticum_sp", "probe", "wheat" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was wheat\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/wheatprobe_2.11.0.zip" }, "Rattus.norvegicus": { "organism": "Rattus norvegicus", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.17.11)", "methods", "OrganismDbi", "GenomicFeatures", "GO.db", "org.Rn.eg.db", "TxDb.Rnorvegicus.UCSC.rn5.refGene" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/Rattus.norvegicus_1.0.0.tgz", "Version": "1.0.0", "hasINSTALL": false, "MD5sum": "647986eeac046bf19acb5f2f7755d124", "Maintainer": "Bioconductor Package Maintainer ", "Author": "Bioconductor Core Team", "Title": "Annotation package for the Rattus.norvegicus object", "suggestsMe": [ "OrganismDbi" ], "source.ver": "src/contrib/Rattus.norvegicus_1.0.0.tar.gz", "Imports": [ "GenomicFeatures", "AnnotationDbi" ], "NeedsCompilation": "no", "Package": "Rattus.norvegicus", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Genetics", "OrganismDb", "Rattus_norvegicus" ], "Description": "Contains the Rattus.norvegicus object to access data from several related annotation packages.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/Rattus.norvegicus_1.0.0.zip" }, "rae230b.db": { "organism": "Rattus norvegicus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.20.2)", "org.Rn.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/rae230b.db_2.8.1.tgz", "Version": "2.8.1", "hasINSTALL": false, "MD5sum": "f4a95469e5efe68bc077c85c6bd2b423", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Affymetrix Rat Expression Set 230 annotation data (chip rae230b)", "source.ver": "src/contrib/rae230b.db_2.8.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate", "RUnit" ], "Package": "rae230b.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Rattus_norvegicus", "rae230b" ], "Description": "Affymetrix Rat Expression Set 230 annotation data (chip rae230b) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/rae230b.db_2.8.1.zip" }, "plasmodiumanophelescdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/plasmodiumanophelescdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "e4f3bd174230ff2bbba77fdc1f767ee0", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "plasmodiumanophelescdf", "suggestsMe": [ "altcdfenvs" ], "source.ver": "src/contrib/plasmodiumanophelescdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "plasmodiumanophelescdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Anopheles_gambiae", "Plasmodium_falciparum", "cdf", "plasmodiumanopheles" ], "Description": "A package containing an environment representing the Plasmodium_Anopheles.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/plasmodiumanophelescdf_2.11.0.zip" }, "pd.ath1.121501": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.ath1.121501_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "7d236edf7d03df6c01944962b71cf61a", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name ATH1-121501", "source.ver": "src/contrib/pd.ath1.121501_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.ath1.121501", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name ATH1-121501", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.ath1.121501_1.8.0.zip" }, "moe430bcdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/moe430bcdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "7929b6e632b4755dc6d45480620c7265", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "moe430bcdf", "source.ver": "src/contrib/moe430bcdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "moe430bcdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "cdf", "moe430b" ], "Description": "A package containing an environment representing the MOE430B.CDF file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/moe430bcdf_2.11.0.zip" }, "hguatlas13k.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)", "org.Hs.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hguatlas13k.db_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "cd4d2cf1ea9bbee17e34becf4f425347", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Clontech BD Atlas Long Oligos Human 13K annotation data (chip hguatlas13k)", "source.ver": "src/contrib/hguatlas13k.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Clontech", "Suggests": [ "annotate", "RUnit" ], "Package": "hguatlas13k.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "ChipDb", "ClontechChip", "Homo_sapiens", "hguatlas13k" ], "Description": "Clontech BD Atlas Long Oligos Human 13K annotation data (chip hguatlas13k) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hguatlas13k.db_2.8.0.zip" }, "mouse.db0": { "organism": "Mus musculus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.1.15)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/mouse.db0_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "fc778b9ed01d04ec5d8501b7809bd03e", "Maintainer": "Biocore Team c/o BioC user list ", "Author": "Marc Carlson, Nianhua Li, Herve Pages", "Title": "Base Level Annotation databases for mouse", "suggestsMe": [ "Resourcerer" ], "source.ver": "src/contrib/mouse.db0_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "Package": "mouse.db0", "License": "The Artistic License, Version 2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Mus_musculus", "db0" ], "Description": "Base annotation databases for mouse, intended ONLY to be used by AnnotationDbi to produce regular annotation packages.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/mouse.db0_2.8.0.zip" }, "rhesuscdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/rhesuscdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "6fa29e26b7c044e401938db163b2ff1d", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "rhesuscdf", "source.ver": "src/contrib/rhesuscdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "rhesuscdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Macaca_mulatta", "cdf", "rhesus" ], "Description": "A package containing an environment representing the Rhesus.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/rhesuscdf_2.11.0.zip" }, "hgu95a.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)", "org.Hs.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hgu95a.db_2.8.0.tgz", "Version": "2.8.0", "dependsOnMe": [ "GSVAdata" ], "hasINSTALL": false, "MD5sum": "5553efa86e59292f4790221a08a6cac7", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Affymetrix Human Genome U95 Set annotation data (chip hgu95a)", "source.ver": "src/contrib/hgu95a.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate", "RUnit" ], "Package": "hgu95a.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Homo_sapiens", "hgu95a" ], "Description": "Affymetrix Human Genome U95 Set annotation data (chip hgu95a) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hgu95a.db_2.8.0.zip" }, "mgu74cv2probe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/mgu74cv2probe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "15f428d64be67ecf87f8fef0ce3cc621", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type mgu74cv2", "source.ver": "src/contrib/mgu74cv2probe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "mgu74cv2probe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "mgu74cv2", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was MG-U74Cv2\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/mgu74cv2probe_2.11.0.zip" }, "hgu219probe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hgu219probe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "292f644d10e6fd8a442c2b3c4ff7f7af", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type hgu219", "source.ver": "src/contrib/hgu219probe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "hgu219probe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "hgu219", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG-U219\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hgu219probe_2.11.0.zip" }, "org.Rn.eg.db": { "organism": "Rattus Norvegicus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/org.Rn.eg.db_2.8.0.tgz", "Version": "2.8.0", "dependsOnMe": [ "illuminaRatv1.db", "lumiRatAll.db", "rae230a.db", "rae230b.db", "ragene10stprobeset.db", "ragene10sttranscriptcluster.db", "ragene11stprobeset.db", "ragene11sttranscriptcluster.db", "rat2302.db", "Rattus.norvegicus", "rgu34a.db", "rgu34b.db", "rgu34c.db", "rguatlas4k.db", "rgug4105a.db", "rgug4130a.db", "rgug4131a.db", "RnAgilentDesign028282.db", "rnu34.db", "rtu34.db" ], "hasINSTALL": false, "MD5sum": "94a535b25e27c9dc4cb21388e66ba78f", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Genome wide annotation for Rat", "suggestsMe": [ "GeneAnswers", "HTSanalyzeR", "MLP", "oneChannelGUI", "RpsiXML" ], "source.ver": "src/contrib/org.Rn.eg.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "Suggests": [ "annotate", "RUnit" ], "Package": "org.Rn.eg.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "OrgDb", "Rattus_norvegicus", "ratLLMappings" ], "Description": "Genome wide annotation for Rat, primarily based on mapping using Entrez Gene identifiers.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/org.Rn.eg.db_2.8.0.zip" }, "ath1121501cdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/ath1121501cdf_2.11.0.tgz", "Version": "2.11.0", "dependsOnMe": [ "XhybCasneuf" ], "hasINSTALL": false, "MD5sum": "0a6051777595e3fc9d57710535162d2f", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "ath1121501cdf", "source.ver": "src/contrib/ath1121501cdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "ath1121501cdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Arabidopsis_thaliana", "ath1121501", "cdf" ], "Description": "A package containing an environment representing the ATH1-121501.CDF file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/ath1121501cdf_2.11.0.zip" }, "hgu95bcdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hgu95bcdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "4fc575b9416dbc72936b49d51872eb23", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "hgu95bcdf", "source.ver": "src/contrib/hgu95bcdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "hgu95bcdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "hgu95b" ], "Description": "A package containing an environment representing the HG_U95B.CDF file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hgu95bcdf_2.11.0.zip" }, "rgu34ccdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/rgu34ccdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "b555df3e6700f726d886518c1766602b", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "rgu34ccdf", "source.ver": "src/contrib/rgu34ccdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "rgu34ccdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Rattus_norvegicus", "cdf", "rgu34c" ], "Description": "A package containing an environment representing the RG_U34C.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/rgu34ccdf_2.11.0.zip" }, "pd.rae230a": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.rae230a_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "096a32a8564f4c0c8291585a40852f20", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name RAE230A", "source.ver": "src/contrib/pd.rae230a_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.rae230a", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name RAE230A", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.rae230a_1.8.0.zip" }, "pd.mogene.1.0.st.v1": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.mogene.1.0.st.v1_3.8.0.tgz", "Version": "3.8.0", "hasINSTALL": false, "MD5sum": "8fd3d3b050443c29ee70a45b2e9b7e59", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for Affymetrix MoGene-1_0-st-v1", "source.ver": "src/contrib/pd.mogene.1.0.st.v1_3.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.mogene.1.0.st.v1", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for Affymetrix MoGene-1_0-st-v1", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.mogene.1.0.st.v1_3.8.0.zip" }, "mu11ksuba.db": { "organism": "Mus musculus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.20.2)", "org.Mm.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/mu11ksuba.db_2.8.1.tgz", "Version": "2.8.1", "hasINSTALL": false, "MD5sum": "d52ad3dad99de9174e41571cf2ead075", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Affymetrix Murine 11K Set annotation data (chip mu11ksuba)", "source.ver": "src/contrib/mu11ksuba.db_2.8.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate", "RUnit" ], "Package": "mu11ksuba.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Mus_musculus", "mu11ksuba" ], "Description": "Affymetrix Murine 11K Set annotation data (chip mu11ksuba) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/mu11ksuba.db_2.8.1.zip" }, "ecoliasv2cdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/ecoliasv2cdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "e4a60ca3d84b55f8aa2d86592e0935f8", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "ecoliasv2cdf", "source.ver": "src/contrib/ecoliasv2cdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "ecoliasv2cdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Escherichia_coli", "cdf", "ecoliasv2" ], "Description": "A package containing an environment representing the Ecoli_ASv2.CDF file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/ecoliasv2cdf_2.11.0.zip" }, "mgu74cv2.db": { "organism": "Mus musculus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.20.2)", "org.Mm.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/mgu74cv2.db_2.8.1.tgz", "Version": "2.8.1", "hasINSTALL": false, "MD5sum": "5429d7fc3bb3840415a7fb4122e24ed6", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Affymetrix Murine Genome U74v2 annotation data (chip mgu74cv2)", "source.ver": "src/contrib/mgu74cv2.db_2.8.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate", "RUnit" ], "Package": "mgu74cv2.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Mus_musculus", "mgu74cv2" ], "Description": "Affymetrix Murine Genome U74v2 annotation data (chip mgu74cv2) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/mgu74cv2.db_2.8.1.zip" }, "mu19ksubacdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/mu19ksubacdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "c740eb0bda2b2a14f7664a3c049a97b4", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "mu19ksubacdf", "source.ver": "src/contrib/mu19ksubacdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "mu19ksubacdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "cdf", "mu19ksuba" ], "Description": "A package containing an environment representing the Mu19KsubA.CDF file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/mu19ksubacdf_2.11.0.zip" }, "drosgenome1probe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/drosgenome1probe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "6e1a1830605ea2df78ff22267a6c4984", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type drosgenome1", "source.ver": "src/contrib/drosgenome1probe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "drosgenome1probe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Drosophila_melanogaster", "drosgenome1", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was DrosGenome1\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/drosgenome1probe_2.11.0.zip" }, "pd.rae230b": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.rae230b_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "fadc85422c7f833cfd3dd6d556208dfc", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name RAE230B", "source.ver": "src/contrib/pd.rae230b_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.rae230b", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name RAE230B", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.rae230b_1.8.0.zip" }, "pd.cyngene.1.0.st": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.cyngene.1.0.st_3.8.0.tgz", "Version": "3.8.0", "hasINSTALL": false, "MD5sum": "02fe2e59b79d24ed23cfbd3526761b86", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for Affymetrix CynGene-1_0-st", "source.ver": "src/contrib/pd.cyngene.1.0.st_3.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.cyngene.1.0.st", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for Affymetrix CynGene-1_0-st", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.cyngene.1.0.st_3.8.0.zip" }, "hu6800cdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hu6800cdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "9d82ddd9fbc0460e4b11bfe7f15d6928", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "hu6800cdf", "source.ver": "src/contrib/hu6800cdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "hu6800cdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "hu6800" ], "Description": "A package containing an environment representing the Hu6800.CDF file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hu6800cdf_2.11.0.zip" }, "org.Mm.eg.db": { "organism": "Mus musculus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/org.Mm.eg.db_2.8.0.tgz", "Version": "2.8.0", "dependsOnMe": [ "illuminaMousev1.db", "illuminaMousev1p1.db", "illuminaMousev2.db", "lumiMouseAll.db", "mgu74a.db", "mgu74av2.db", "mgu74b.db", "mgu74bv2.db", "mgu74c.db", "mgu74cv2.db", "mguatlas5k.db", "mgug4104a.db", "mgug4120a.db", "mgug4121a.db", "mgug4122a.db", "mm24kresogen.db", "MmAgilentDesign026655.db", "moe430a.db", "moe430b.db", "mogene10stprobeset.db", "mogene10sttranscriptcluster.db", "mogene11stprobeset.db", "mogene11sttranscriptcluster.db", "mouse4302.db", "mouse430a2.db", "mpedbarray.db", "mu11ksuba.db", "mu11ksubb.db", "Mu15v1.db", "mu19ksuba.db", "mu19ksubb.db", "mu19ksubc.db", "Mu22v3.db", "Mus.musculus", "nugomm1a520177.db" ], "hasINSTALL": false, "MD5sum": "3060200cd06157eb94c329af3fa8f3d2", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Genome wide annotation for Mouse", "suggestsMe": [ "annotate", "GeneAnswers", "GenomicFeatures", "girafe", "HTSanalyzeR", "MLP", "MmPalateMiRNA", "oneChannelGUI", "RpsiXML" ], "source.ver": "src/contrib/org.Mm.eg.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "Suggests": [ "annotate", "RUnit" ], "Package": "org.Mm.eg.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Mus_musculus", "OrgDb", "mouseLLMappings" ], "Description": "Genome wide annotation for Mouse, primarily based on mapping using Entrez Gene identifiers.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/org.Mm.eg.db_2.8.0.zip" }, "pd.ragene.1.0.st.v1": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.ragene.1.0.st.v1_3.8.0.tgz", "Version": "3.8.0", "hasINSTALL": false, "MD5sum": "40d0c0a747bf0c566feb54883aed75c0", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for Affymetrix RaGene-1_0-st-v1", "source.ver": "src/contrib/pd.ragene.1.0.st.v1_3.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.ragene.1.0.st.v1", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for Affymetrix RaGene-1_0-st-v1", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.ragene.1.0.st.v1_3.8.0.zip" }, "pd.porgene.1.1.st": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.porgene.1.1.st_3.8.0.tgz", "Version": "3.8.0", "hasINSTALL": false, "MD5sum": "dbb149725e83b9bfecedea299af80b67", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for Affymetrix PorGene-1_1-st", "source.ver": "src/contrib/pd.porgene.1.1.st_3.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.porgene.1.1.st", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for Affymetrix PorGene-1_1-st", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.porgene.1.1.st_3.8.0.zip" }, "ecoli2.db": { "organism": "Escherichia coli", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.20.2)", "org.EcK12.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/ecoli2.db_2.8.1.tgz", "Version": "2.8.1", "hasINSTALL": false, "MD5sum": "3bf7a901816bd03c9d34b1d1aed230c8", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Affymetrix E. coli Genome 2.0 Array annotation data (chip ecoli2)", "source.ver": "src/contrib/ecoli2.db_2.8.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate", "RUnit" ], "Package": "ecoli2.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Escherichia_coli", "ecoli2" ], "Description": "Affymetrix E. coli Genome 2.0 Array annotation data (chip ecoli2) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/ecoli2.db_2.8.1.zip" }, "canine.db": { "organism": "Canis familiaris", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.20.2)", "org.Cf.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/canine.db_2.8.1.tgz", "Version": "2.8.1", "hasINSTALL": false, "MD5sum": "1a357a7ab2d20e64d76e1b4fad555fc1", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Affymetrix canine annotation data (chip canine)", "source.ver": "src/contrib/canine.db_2.8.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate", "RUnit" ], "Package": "canine.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Canis_familiaris", "ChipDb", "canine" ], "Description": "Affymetrix canine annotation data (chip canine) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/canine.db_2.8.1.zip" }, "hguqiagenv3.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)", "org.Hs.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hguqiagenv3.db_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "0d97b18eea3651730dcdebda77b27b13", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Qiagen Qiagen V3.0 oligo set annotation data (chip hguqiagenv3)", "source.ver": "src/contrib/hguqiagenv3.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Qiagen", "Suggests": [ "annotate", "RUnit" ], "Package": "hguqiagenv3.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "ChipDb", "Homo_sapiens", "QiagenChip", "hguqiagenv3" ], "Description": "Qiagen Qiagen V3.0 oligo set annotation data (chip hguqiagenv3) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hguqiagenv3.db_2.8.0.zip" }, "citruscdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/citruscdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "c30873cb95b53e22c8a84a98e7f32593", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "citruscdf", "source.ver": "src/contrib/citruscdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "citruscdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Citrus_sp", "cdf", "citrus" ], "Description": "A package containing an environment representing the Citrus.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/citruscdf_2.11.0.zip" }, "TxDb.Mmusculus.UCSC.mm9.knownGene": { "organism": "Mus musculus", "Depends": [ "GenomicFeatures (>= 1.9.39)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/TxDb.Mmusculus.UCSC.mm9.knownGene_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "3811dbe1e54633d978883208ea14f34e", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Annotation package for TranscriptDb object(s)", "suggestsMe": [ "chipseq", "ggbio" ], "source.ver": "src/contrib/TxDb.Mmusculus.UCSC.mm9.knownGene_2.8.0.tar.gz", "Imports": [ "GenomicFeatures", "AnnotationDbi" ], "NeedsCompilation": "no", "Package": "TxDb.Mmusculus.UCSC.mm9.knownGene", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Genetics", "Mus_musculus", "TranscriptDb" ], "Description": "Exposes an annotation databases generated from UCSC by exposing these as TranscriptDb objects", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/TxDb.Mmusculus.UCSC.mm9.knownGene_2.8.0.zip" }, "hgu219.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)", "org.Hs.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hgu219.db_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "3e94650601baa16ab365e4076e013843", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Affymetrix Human Genome 219 Plate annotation data (chip hgu219)", "source.ver": "src/contrib/hgu219.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate", "RUnit" ], "Package": "hgu219.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Homo_sapiens", "hgu219" ], "Description": "Affymetrix Human Genome 219 Plate annotation data (chip hgu219) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hgu219.db_2.8.0.zip" }, "org.Ag.eg.db": { "organism": "Anopheles gambiae", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/org.Ag.eg.db_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "531f34195eea52dbc52905cecb3c93b5", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Genome wide annotation for Anopheles", "source.ver": "src/contrib/org.Ag.eg.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "Suggests": [ "annotate", "RUnit" ], "Package": "org.Ag.eg.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Anopheles_gambiae", "OrgDb" ], "Description": "Genome wide annotation for Anopheles, primarily based on mapping using Entrez Gene identifiers.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/org.Ag.eg.db_2.8.0.zip" }, "Hs6UG171.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)", "org.Hs.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/Hs6UG171.db_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "5f077c1b07d8c81c6820e7db15662010", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "A package containing metadata for Hs6UG171 arrays", "source.ver": "src/contrib/Hs6UG171.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "CUSTOM", "Suggests": [ "annotate", "RUnit" ], "Package": "Hs6UG171.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "CUSTOMChip", "ChipDb", "Homo_sapiens", "Hs6UG171" ], "Description": "A package containing metadata for Hs6UG171 arrays assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/Hs6UG171.db_2.8.0.zip" }, "vitisviniferacdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/vitisviniferacdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "269ace7cb9096c1715de6b198f243d17", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "vitisviniferacdf", "source.ver": "src/contrib/vitisviniferacdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "vitisviniferacdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Vitis_vinifera", "cdf", "vitisvinifera" ], "Description": "A package containing an environment representing the Vitis_Vinifera.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/vitisviniferacdf_2.11.0.zip" }, "TxDb.Mmusculus.UCSC.mm10.knownGene": { "organism": "Mus musculus", "Depends": [ "GenomicFeatures (>= 1.10.1)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/TxDb.Mmusculus.UCSC.mm10.knownGene_2.8.0.tgz", "Version": "2.8.0", "dependsOnMe": [ "Mus.musculus" ], "hasINSTALL": false, "MD5sum": "58d988e4175d2fdc65fd4a0b115fbbcc", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Annotation package for TranscriptDb object(s)", "source.ver": "src/contrib/TxDb.Mmusculus.UCSC.mm10.knownGene_2.8.0.tar.gz", "Imports": [ "GenomicFeatures", "AnnotationDbi" ], "NeedsCompilation": "no", "Package": "TxDb.Mmusculus.UCSC.mm10.knownGene", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Genetics", "Mus_musculus", "TranscriptDb" ], "Description": "Exposes an annotation databases generated from UCSC by exposing these as TranscriptDb objects", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/TxDb.Mmusculus.UCSC.mm10.knownGene_2.8.0.zip" }, "SNPlocs.Hsapiens.dbSNP.20101109": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.10)", "IRanges", "GenomicRanges" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/SNPlocs.Hsapiens.dbSNP.20101109_0.99.6.tgz", "Version": "0.99.6", "hasINSTALL": false, "MD5sum": "5f3c0b9ba05f4bd0ce206d2e45a1863a", "Maintainer": "H. Pages ", "Author": "Herve Pages", "Title": "SNP locations for Homo sapiens (dbSNP Build 132)", "suggestsMe": [ "ceu1kg", "VariantAnnotation" ], "source.ver": "src/contrib/SNPlocs.Hsapiens.dbSNP.20101109_0.99.6.tar.gz", "Imports": [ "methods", "IRanges", "GenomicRanges" ], "NeedsCompilation": "no", "Suggests": [ "Biostrings", "BSgenome (>= 1.16.1)", "BSgenome.Hsapiens.UCSC.hg19" ], "Package": "SNPlocs.Hsapiens.dbSNP.20101109", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Genetics", "Homo_sapiens" ], "Description": "SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 132. The source data files used for this package were created by NCBI on 9 November 2010 and contain SNPs mapped to reference genome GRCh37. WARNING: Note that the GRCh37 genome is the same as the hg19 genome from UCSC except for the mitochondrion chromosome. Therefore, the SNPs in this package can be \"injected\" in BSgenome.Hsapiens.UCSC.hg19 but this injection will exclude chrM (i.e. nothing will be injected in that sequence).", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/SNPlocs.Hsapiens.dbSNP.20101109_0.99.6.zip" }, "illuminaHumanv3.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.37)", "org.Hs.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/illuminaHumanv3.db_1.16.0.tgz", "Version": "1.16.0", "hasINSTALL": false, "MD5sum": "ad77055c61915a12fcf13f3486cfadcc", "Maintainer": "Mark Dunning ", "Author": "Mark Dunning, Andy Lynch, Matthew Eldridge", "Title": "Illumina HumanHT12v3 annotation data (chip illuminaHumanv3)", "suggestsMe": [ "beadarray", "BeadArrayUseCases" ], "source.ver": "src/contrib/illuminaHumanv3.db_1.16.0.tar.gz", "Imports": [ "methods", "AnnotationDbi", "AnnotationForge" ], "NeedsCompilation": "no", "manufacturer": "Illumina", "Suggests": [ "annotate", "RUnit" ], "Package": "illuminaHumanv3.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "ChipDb", "Homo_sapiens", "IlluminaChip", "illuminaHumanv3" ], "Description": "Illumina HumanHT12v3 annotation data (chip illuminaHumanv3) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/illuminaHumanv3.db_1.16.0.zip" }, "maizeprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/maizeprobe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "d4a1b44a1df667e56b9f669ec9db65f0", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type maize", "source.ver": "src/contrib/maizeprobe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "maizeprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Zea_mays", "maize", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Maize\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/maizeprobe_2.11.0.zip" }, "org.Pt.eg.db": { "organism": "Pan troglodytes", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/org.Pt.eg.db_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "5f2115c731dc88465acfe23343e2e57e", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Genome wide annotation for Chimp", "source.ver": "src/contrib/org.Pt.eg.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "Suggests": [ "annotate", "RUnit" ], "Package": "org.Pt.eg.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "OrgDb", "Pan_troglodytes" ], "Description": "Genome wide annotation for Chimp, primarily based on mapping using Entrez Gene identifiers.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/org.Pt.eg.db_2.8.0.zip" }, "xenopus.db0": { "organism": "Xenopus laevis", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.7.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/xenopus.db0_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "4e079ea3aea02a4e98492fa07c140c48", "Maintainer": "Biocore Team c/o BioC user list ", "Author": "Marc Carlson, Herve Pages", "Title": "Base Level Annotation databases for xenopus", "source.ver": "src/contrib/xenopus.db0_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "Package": "xenopus.db0", "License": "The Artistic License, Version 2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Xenopus_laevis", "db0" ], "Description": "Base annotation databases for xenopus, intended ONLY to be used by AnnotationDbi to produce regular annotation packages.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/xenopus.db0_2.8.0.zip" }, "test3cdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/test3cdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "ae6251ea9856b7c8cb71a92297759bc9", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "test3cdf", "suggestsMe": [ "AffyExpress" ], "source.ver": "src/contrib/test3cdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "test3cdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "test3" ], "Description": "A package containing an environment representing the Test3.CDF file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/test3cdf_2.11.0.zip" }, "RaExExonProbesetLocation": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.15.29)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/RaExExonProbesetLocation_1.0.4.tgz", "Version": "1.0.4", "hasINSTALL": false, "MD5sum": "4b499302e69652eebb63ded14203ffea", "Maintainer": "Raffaele A. Calogero ", "Author": "Raffaele A. Calogero", "Title": "Exon-level probeset chromosome location for microarrays of type RaEx", "suggestsMe": [ "oneChannelGUI" ], "source.ver": "src/contrib/RaExExonProbesetLocation_1.0.4.tar.gz", "NeedsCompilation": "no", "Package": "RaExExonProbesetLocation", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "RaEx", "Rattus norvegicus" ], "Description": "This package was automatically created by package AnnotationDbi version 1.15.29. The exon-level probeset genome location was retrieved from Netaffx using AffyCompatible. The exon-level probeset genome location was retrieved from Netaffx using AffyCompatible.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/RaExExonProbesetLocation_1.0.4.zip" }, "pd.moex.1.0.st.v1": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.moex.1.0.st.v1_3.8.0.tgz", "Version": "3.8.0", "hasINSTALL": false, "MD5sum": "473d0ebea7e797d8560ab110b72a3b8a", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for Affymetrix MoEx-1_0-st-v1", "source.ver": "src/contrib/pd.moex.1.0.st.v1_3.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.moex.1.0.st.v1", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for Affymetrix MoEx-1_0-st-v1", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.moex.1.0.st.v1_3.8.0.zip" }, "pd.hugene.1.1.st.v1": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.hugene.1.1.st.v1_3.8.0.tgz", "Version": "3.8.0", "hasINSTALL": false, "MD5sum": "d154d8f8f2e26f699d318ecfd19e0b80", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for Affymetrix HuGene-1_1-st-v1", "source.ver": "src/contrib/pd.hugene.1.1.st.v1_3.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.hugene.1.1.st.v1", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for Affymetrix HuGene-1_1-st-v1", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.hugene.1.1.st.v1_3.8.0.zip" }, "pd.equgene.1.1.st": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.equgene.1.1.st_3.8.0.tgz", "Version": "3.8.0", "hasINSTALL": false, "MD5sum": "0c760647a0a96890736c461148a209a9", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for Affymetrix EquGene-1_1-st", "source.ver": "src/contrib/pd.equgene.1.1.st_3.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.equgene.1.1.st", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for Affymetrix EquGene-1_1-st", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.equgene.1.1.st_3.8.0.zip" }, "org.Bt.eg.db": { "organism": "Bos taurus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/org.Bt.eg.db_2.8.0.tgz", "Version": "2.8.0", "dependsOnMe": [ "bovine.db" ], "hasINSTALL": false, "MD5sum": "3b3bc6568faa0f47fec72d12b74c9ff3", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Genome wide annotation for Bovine", "suggestsMe": [ "AnnotationFuncs" ], "source.ver": "src/contrib/org.Bt.eg.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "Suggests": [ "annotate", "RUnit" ], "Package": "org.Bt.eg.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Bos_taurus", "OrgDb" ], "Description": "Genome wide annotation for Bovine, primarily based on mapping using Entrez Gene identifiers.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/org.Bt.eg.db_2.8.0.zip" }, "mgug4120a.db": { "organism": "Mus musculus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.20.2)", "org.Mm.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/mgug4120a.db_2.8.1.tgz", "Version": "2.8.1", "hasINSTALL": false, "MD5sum": "42a7f40a067cbc44b952cd7e8d766db4", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Agilent annotation data (chip mgug4120a)", "source.ver": "src/contrib/mgug4120a.db_2.8.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Agilent", "Suggests": [ "annotate", "RUnit" ], "Package": "mgug4120a.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AgilentChip", "AnnotationData", "ChipDb", "Mus_musculus", "mgug4120a" ], "Description": "Agilent annotation data (chip mgug4120a) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/mgug4120a.db_2.8.1.zip" }, "gahgu133a.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.5.24)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/gahgu133a.db_2.2.0.tgz", "Version": "2.2.0", "hasINSTALL": false, "MD5sum": "f3c376e088afd2d2d0dda0025ad4934d", "Maintainer": "Francesco Ferrari ", "Author": "Francesco Ferrari, Stefania Bortoluzzi, Alessandro Coppe, Alexandra Sirota, Marilyn Safran, Michael Shmoish, Sergio Ferrari, Doron Lancet, Gian Antonio Danieli and Silvio Bicciato", "Title": "Genecards derived annotations for gahgu133a custom probeset definitions", "source.ver": "src/contrib/gahgu133a.db_2.2.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Package": "gahgu133a.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "GeneCardsCustomSchema" ], "Description": "Genecards derived annotations for gahgu133a custom probeset definitions assembled using data from the GeneCards database (www.genecards.org)", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/gahgu133a.db_2.2.0.zip" }, "pedbarrayv10.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)", "org.Hs.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pedbarrayv10.db_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "e09d0acb14132b30afd0edfacbc9195c", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "FHCRC Nelson Lab pedbarrayv10 Annotation Data (pedbarrayv10)", "source.ver": "src/contrib/pedbarrayv10.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "FHCRC Nelson Lab", "Suggests": [ "annotate", "RUnit" ], "Package": "pedbarrayv10.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "ChipDb", "FHCRC Nelson LabChip", "Homo_sapiens", "pedbarrayv10" ], "Description": "FHCRC Nelson Lab pedbarrayv10 Annotation Data (pedbarrayv10) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pedbarrayv10.db_2.8.0.zip" }, "pd.wheat": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.wheat_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "9ef32c4f0a9879c91c66273a8ab2a634", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name wheat", "source.ver": "src/contrib/pd.wheat_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.wheat", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name wheat", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.wheat_1.8.0.zip" }, "pd.hg.u133.plus.2": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.hg.u133.plus.2_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "999dd51ff22bc0aa51a25baf8f86d4b0", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name HG-U133_Plus_2", "source.ver": "src/contrib/pd.hg.u133.plus.2_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.hg.u133.plus.2", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name HG-U133_Plus_2", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.hg.u133.plus.2_1.8.0.zip" }, "pd.citrus": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.citrus_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "59613d20725fec59adebc718ca2cd4e9", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name Citrus", "source.ver": "src/contrib/pd.citrus_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.citrus", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name Citrus", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.citrus_1.8.0.zip" }, "gahgu95e.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.5.24)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/gahgu95e.db_2.2.0.tgz", "Version": "2.2.0", "hasINSTALL": false, "MD5sum": "9b3e944678de78188bf7bff18684e92f", "Maintainer": "Francesco Ferrari ", "Author": "Francesco Ferrari, Stefania Bortoluzzi, Alessandro Coppe, Alexandra Sirota, Marilyn Safran, Michael Shmoish, Sergio Ferrari, Doron Lancet, Gian Antonio Danieli and Silvio Bicciato", "Title": "Genecards derived annotations for gahgu95e custom probeset definitions", "source.ver": "src/contrib/gahgu95e.db_2.2.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Package": "gahgu95e.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "GeneCardsCustomSchema" ], "Description": "Genecards derived annotations for gahgu95e custom probeset definitions assembled using data from the GeneCards database (www.genecards.org)", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/gahgu95e.db_2.2.0.zip" }, "zebrafishprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/zebrafishprobe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "73bd79f3cc1b07921d46f7001dac6def", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type zebrafish", "source.ver": "src/contrib/zebrafishprobe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "zebrafishprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Danio_rerio", "probe", "zebrafish" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Zebrafish\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/zebrafishprobe_2.11.0.zip" }, "ygs98.db": { "organism": "Saccharomyces cerevisiae", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)", "org.Sc.sgd.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/ygs98.db_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "3eb353c724f281e01699b4197de0208a", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Affymetrix Yeast Genome S98 Array annotation data (chip ygs98)", "source.ver": "src/contrib/ygs98.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate", "RUnit" ], "Package": "ygs98.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Saccharomyces_cerevisiae", "ygs98" ], "Description": "Affymetrix Yeast Genome S98 Array annotation data (chip ygs98) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/ygs98.db_2.8.0.zip" }, "test2cdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/test2cdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "e76879d92d5e56cc856de6b9cef2ebc5", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "test2cdf", "source.ver": "src/contrib/test2cdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "test2cdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "test2" ], "Description": "A package containing an environment representing the Test2.CDF file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/test2cdf_2.11.0.zip" }, "SNPlocs.Hsapiens.dbSNP.20100427": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.10)", "IRanges", "GenomicRanges" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/SNPlocs.Hsapiens.dbSNP.20100427_0.99.6.tgz", "Version": "0.99.6", "hasINSTALL": false, "MD5sum": "8d9fe0843a7d66ec945861944eb14e93", "Maintainer": "H. Pages ", "Author": "Herve Pages", "Title": "SNP locations for Homo sapiens (dbSNP BUILD 131)", "suggestsMe": [ "BSgenome", "cheung2010" ], "source.ver": "src/contrib/SNPlocs.Hsapiens.dbSNP.20100427_0.99.6.tar.gz", "Imports": [ "methods", "IRanges", "GenomicRanges" ], "NeedsCompilation": "no", "Suggests": [ "Biostrings", "BSgenome (>= 1.16.1)", "BSgenome.Hsapiens.UCSC.hg19" ], "Package": "SNPlocs.Hsapiens.dbSNP.20100427", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Genetics", "Homo_sapiens" ], "Description": "SNP locations and alleles for Homo sapiens extracted from dbSNP BUILD 131:human_9606 (based on GRCh37). The source data files used for this package were created by NCBI on 24-26 March 2010. WARNING: The SNPs in this package are based on the GRCh37 genome. Note that the GRCh37 genome is the same as the hg19 genome from UCSC except for the mitochondrion chromosome. Therefore, the SNPs in this package can be \"injected\" in BSgenome.Hsapiens.UCSC.hg19 but this injection will exclude chrM (i.e. nothing will be injected in that sequence).", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/SNPlocs.Hsapiens.dbSNP.20100427_0.99.6.zip" }, "pd.rhesus": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.rhesus_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "c50f4cea885b7e7ea0b465cdf4b78b58", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name Rhesus", "source.ver": "src/contrib/pd.rhesus_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.rhesus", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name Rhesus", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.rhesus_1.8.0.zip" }, "pd.hugene.2.1.st": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.hugene.2.1.st_3.8.0.tgz", "Version": "3.8.0", "hasINSTALL": false, "MD5sum": "e644276d0ad130ed011d70f71db84da4", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for Affymetrix HuGene-2_1-st", "source.ver": "src/contrib/pd.hugene.2.1.st_3.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.hugene.2.1.st", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for Affymetrix HuGene-2_1-st", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.hugene.2.1.st_3.8.0.zip" }, "bovineprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/bovineprobe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "08003d6d412fd1e0fa563b2c5a177a02", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type bovine", "source.ver": "src/contrib/bovineprobe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "bovineprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Bos_taurus", "bovine", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Bovine\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/bovineprobe_2.11.0.zip" }, "canine2probe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/canine2probe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "8f240c5f5d16315d83f536526f777d6d", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type canine2", "source.ver": "src/contrib/canine2probe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "canine2probe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Canis_familiaris", "canine2", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Canine\\_2\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/canine2probe_2.11.0.zip" }, "pd.xenopus.laevis": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.xenopus.laevis_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "ccf172432802ba82383e990045a09523", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name Xenopus_laevis", "source.ver": "src/contrib/pd.xenopus.laevis_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.xenopus.laevis", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name Xenopus_laevis", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.xenopus.laevis_1.8.0.zip" }, "mgu74b.db": { "organism": "Mus musculus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.20.2)", "org.Mm.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/mgu74b.db_2.8.1.tgz", "Version": "2.8.1", "hasINSTALL": false, "MD5sum": "f0a5c03c97df00341cc62be67bd76177", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Affymetrix Murine Genome U74v2 annotation data (chip mgu74b)", "source.ver": "src/contrib/mgu74b.db_2.8.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate", "RUnit" ], "Package": "mgu74b.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Mus_musculus", "mgu74b" ], "Description": "Affymetrix Murine Genome U74v2 annotation data (chip mgu74b) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/mgu74b.db_2.8.1.zip" }, "pd.poplar": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.poplar_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "7368d71048244b5de1ff74e9e19b4d34", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name Poplar", "source.ver": "src/contrib/pd.poplar_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.poplar", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name Poplar", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.poplar_1.8.0.zip" }, "pd.mu11ksuba": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.mu11ksuba_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "75674abb619efd94fee8176bdd51047c", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name Mu11KsubA", "source.ver": "src/contrib/pd.mu11ksuba_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.mu11ksuba", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name Mu11KsubA", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.mu11ksuba_1.8.0.zip" }, "hu35ksubccdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hu35ksubccdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "06bef7625ab88fd0b68549f35809d568", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "hu35ksubccdf", "source.ver": "src/contrib/hu35ksubccdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "hu35ksubccdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "hu35ksubc" ], "Description": "A package containing an environment representing the Hu35KsubC.CDF file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hu35ksubccdf_2.11.0.zip" }, "BSgenome.Dmelanogaster.UCSC.dm2": { "organism": "Drosophila melanogaster", "Depends": [ "BSgenome (>= 1.25.4)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/BSgenome.Dmelanogaster.UCSC.dm2_1.3.19.tgz", "Version": "1.3.19", "hasINSTALL": false, "MD5sum": "41a91323a5d8d6abf92384374a7b80af", "Maintainer": "Bioconductor Package Maintainer ", "Author": "The Bioconductor Dev Team", "Title": "Drosophila melanogaster (Fly) full genome (UCSC version dm2)", "source.ver": "src/contrib/BSgenome.Dmelanogaster.UCSC.dm2_1.3.19.tar.gz", "Imports": [ "BSgenome" ], "NeedsCompilation": "no", "Package": "BSgenome.Dmelanogaster.UCSC.dm2", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Drosophila_melanogaster", "Genetics" ], "Description": "Drosophila melanogaster (Fly) full genome as provided by UCSC (dm2, Apr. 2004) and stored in Biostrings objects.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/BSgenome.Dmelanogaster.UCSC.dm2_1.3.19.zip" }, "hcg110probe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hcg110probe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "e9a900cf0ed25b9b83db4a9f37379423", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type hcg110", "source.ver": "src/contrib/hcg110probe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "hcg110probe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "hcg110", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HC-G110\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hcg110probe_2.11.0.zip" }, "org.Mmu.eg.db": { "organism": "Macaca mulatta", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/org.Mmu.eg.db_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "b8c5ff79ba78858f9572dc324d9e4bcf", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Genome wide annotation for Rhesus", "source.ver": "src/contrib/org.Mmu.eg.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "Suggests": [ "annotate", "RUnit" ], "Package": "org.Mmu.eg.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Macaca_mulatta", "OrgDb" ], "Description": "Genome wide annotation for Rhesus, primarily based on mapping using Entrez Gene identifiers.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/org.Mmu.eg.db_2.8.0.zip" }, "xtropicalisprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/xtropicalisprobe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "4af9baee9325aea751510a45eb32b242", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type xtropicalis", "source.ver": "src/contrib/xtropicalisprobe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "xtropicalisprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Xenopis_laevis", "probe", "xtropicalis" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was X\\_tropicalis\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/xtropicalisprobe_2.11.0.zip" }, "pd.zebgene.1.0.st": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.zebgene.1.0.st_3.8.0.tgz", "Version": "3.8.0", "hasINSTALL": false, "MD5sum": "921466b00364367527eb3e5299b298c9", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for Affymetrix ZebGene-1_0-st", "source.ver": "src/contrib/pd.zebgene.1.0.st_3.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.zebgene.1.0.st", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for Affymetrix ZebGene-1_0-st", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.zebgene.1.0.st_3.8.0.zip" }, "pd.mu11ksubb": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.mu11ksubb_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "e4fc3858f232c3ca3a831a82c7d7b143", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name Mu11KsubB", "source.ver": "src/contrib/pd.mu11ksubb_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.mu11ksubb", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name Mu11KsubB", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.mu11ksubb_1.8.0.zip" }, "BSgenome.Dmelanogaster.UCSC.dm3": { "organism": "Drosophila melanogaster", "Depends": [ "BSgenome (>= 1.25.4)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/BSgenome.Dmelanogaster.UCSC.dm3_1.3.19.tgz", "Version": "1.3.19", "hasINSTALL": false, "MD5sum": "5edc810440f85997fb46c24630927630", "Maintainer": "Bioconductor Package Maintainer ", "Author": "The Bioconductor Dev Team", "Title": "Drosophila melanogaster (Fly) full genome (UCSC version dm3)", "suggestsMe": [ "Biostrings", "easyRNASeq", "GenomicFeatures", "GenomicRanges", "gmapR", "PWMEnrich", "RnaSeqTutorial" ], "source.ver": "src/contrib/BSgenome.Dmelanogaster.UCSC.dm3_1.3.19.tar.gz", "Imports": [ "BSgenome" ], "NeedsCompilation": "no", "Package": "BSgenome.Dmelanogaster.UCSC.dm3", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Drosophila_melanogaster", "Genetics" ], "Description": "Drosophila melanogaster (Fly) full genome as provided by UCSC (dm3, Apr. 2006) and stored in Biostrings objects.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/BSgenome.Dmelanogaster.UCSC.dm3_1.3.19.zip" }, "ecolicdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/ecolicdf_2.11.0.tgz", "Version": "2.11.0", "dependsOnMe": [ "ecoliLeucine" ], "hasINSTALL": false, "MD5sum": "069d5e975f7e1b4ee82412f2513808dc", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "ecolicdf", "suggestsMe": [ "ecolitk" ], "source.ver": "src/contrib/ecolicdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "ecolicdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Escherichia_coli", "cdf", "ecoli" ], "Description": "A package containing an environment representing the Ecoli.CDF file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/ecolicdf_2.11.0.zip" }, "hgu95e.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)", "org.Hs.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hgu95e.db_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "2baf5b58b8a0c9f0a36444304962e2a2", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Affymetrix Human Genome U95 Set annotation data (chip hgu95e)", "source.ver": "src/contrib/hgu95e.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate", "RUnit" ], "Package": "hgu95e.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Homo_sapiens", "hgu95e" ], "Description": "Affymetrix Human Genome U95 Set annotation data (chip hgu95e) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hgu95e.db_2.8.0.zip" }, "mogene11sttranscriptcluster.db": { "organism": "Mus musculus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.15.34)", "org.Mm.eg.db (>= 2.6.3)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/mogene11sttranscriptcluster.db_4.0.1.tgz", "Version": "4.0.1", "hasINSTALL": false, "MD5sum": "e53a1cbc07d6e399293a627717605a9a", "Maintainer": "Li, Arthur ", "Author": "Arthur Li", "Title": "Affymetrix Mouse Gene 1.1-ST Array Transcriptcluster Revision 4 annotation data (chip mogene11sttranscriptcluster)", "source.ver": "src/contrib/mogene11sttranscriptcluster.db_4.0.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate" ], "Package": "mogene11sttranscriptcluster.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "mogene11sttranscriptcluster" ], "Description": "Affymetrix Mouse Gene 1.1-ST Array Transcriptcluster Revision 4 annotation data (chip mogene11sttranscriptcluster) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/mogene11sttranscriptcluster.db_4.0.1.zip" }, "agcdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/agcdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "4ad4d78f40df6dce15d8017695d3298c", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "agcdf", "source.ver": "src/contrib/agcdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "agcdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Arabidopsis_thaliana", "ag", "cdf" ], "Description": "A package containing an environment representing the AG.CDF file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/agcdf_2.11.0.zip" }, "hthgu133pluspmprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hthgu133pluspmprobe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "cc416f795b0a15b8a6490849ef21d72e", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type hthgu133pluspm", "source.ver": "src/contrib/hthgu133pluspmprobe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "hthgu133pluspmprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "hthgu133pluspm", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HT\\_HG-U133\\_Plus\\_PM\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hthgu133pluspmprobe_2.11.0.zip" }, "mu6500subacdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/mu6500subacdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "5e9d9f2838a20d5b4e3f38d1dbb832ad", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "mu6500subacdf", "source.ver": "src/contrib/mu6500subacdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "mu6500subacdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "cdf", "mu6500suba" ], "Description": "A package containing an environment representing the Mu6500subA.CDF file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/mu6500subacdf_2.11.0.zip" }, "PartheenMetaData.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)", "org.Hs.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/PartheenMetaData.db_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "da091482a521667d0fc87cc273561929", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "PartheenMetaData http://swegene.onk.lu.se Annotation Data (PartheenMetaData)", "source.ver": "src/contrib/PartheenMetaData.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Swegene DNA Microarray Resource Centre, Lund, Sweden", "Suggests": [ "annotate", "RUnit" ], "Package": "PartheenMetaData.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "ChipDb", "Homo_sapiens", "Lund", "PartheenMetaData", "SwedenChip", "Swegene DNA Microarray Resource Centre" ], "Description": "PartheenMetaData http://swegene.onk.lu.se Annotation Data (PartheenMetaData) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/PartheenMetaData.db_2.8.0.zip" }, "rgu34b.db": { "organism": "Rattus norvegicus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.20.2)", "org.Rn.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/rgu34b.db_2.8.1.tgz", "Version": "2.8.1", "hasINSTALL": false, "MD5sum": "426665b73ea342ab876850945da723cf", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Affymetrix Rat Genome U34 Set annotation data (chip rgu34b)", "source.ver": "src/contrib/rgu34b.db_2.8.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate", "RUnit" ], "Package": "rgu34b.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Rattus_norvegicus", "rgu34b" ], "Description": "Affymetrix Rat Genome U34 Set annotation data (chip rgu34b) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/rgu34b.db_2.8.1.zip" }, "nugohs1a520180.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.37)", "org.Hs.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/nugohs1a520180.db_2.6.0.tgz", "Version": "2.6.0", "hasINSTALL": false, "MD5sum": "fad42c176912ac94a75e50a134a88f06", "Maintainer": "Philip de Groot ", "Author": "Philip de Groot", "Title": "Affymetrix nugohs1a520180 annotation data (chip nugohs1a520180)", "source.ver": "src/contrib/nugohs1a520180.db_2.6.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate", "RUnit" ], "Package": "nugohs1a520180.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Homo_sapiens", "nugohs1a520180" ], "Description": "Affymetrix nugohs1a520180 annotation data (chip nugohs1a520180) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/nugohs1a520180.db_2.6.0.zip" }, "fly.db0": { "organism": "Drosophila melanogaster", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.1.15)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/fly.db0_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "e1bd07a8378bc6c3c4c27b450d634a9c", "Maintainer": "Biocore Team c/o BioC user list ", "Author": "Marc Carlson, Nianhua Li, Herve Pages", "Title": "Base Level Annotation databases for fly", "source.ver": "src/contrib/fly.db0_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "Package": "fly.db0", "License": "The Artistic License, Version 2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Drosophila_melanogaster", "db0" ], "Description": "Base annotation databases for fly, intended ONLY to be used by AnnotationDbi to produce regular annotation packages.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/fly.db0_2.8.0.zip" }, "pd.x.tropicalis": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.x.tropicalis_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "9fe10ced7fd5b45a97c5c18c561dbea5", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name X_tropicalis", "source.ver": "src/contrib/pd.x.tropicalis_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.x.tropicalis", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name X_tropicalis", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.x.tropicalis_1.8.0.zip" }, "htrat230pmprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/htrat230pmprobe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "a51fa88ea013618a8f5491fa785fd2e5", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type htrat230pm", "source.ver": "src/contrib/htrat230pmprobe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "htrat230pmprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Rattus_norvegicus", "htrat230pm", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HT\\_Rat230\\_PM\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/htrat230pmprobe_2.11.0.zip" }, "org.EcK12.eg.db": { "organism": "Escherichia coli", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/org.EcK12.eg.db_2.8.0.tgz", "Version": "2.8.0", "dependsOnMe": [ "ecoli2.db" ], "hasINSTALL": false, "MD5sum": "63d525dc79afc993e6243be77a5e7e93", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Genome wide annotation for E coli strain K12", "suggestsMe": [ "qpgraph" ], "source.ver": "src/contrib/org.EcK12.eg.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "Suggests": [ "annotate", "RUnit" ], "Package": "org.EcK12.eg.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Escherichia_coli", "OrgDb" ], "Description": "Genome wide annotation for E coli strain K12, primarily based on mapping using Entrez Gene identifiers.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/org.EcK12.eg.db_2.8.0.zip" }, "illuminaRatv1.db": { "organism": "Rattus norvegicus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.37)", "org.Rn.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/illuminaRatv1.db_1.16.1.tgz", "Version": "1.16.1", "hasINSTALL": false, "MD5sum": "56188d43db506d33e467b404070d256f", "Maintainer": "Mark Dunning ", "Author": "Mark Dunning, Andy Lynch, Matthew Eldridge", "Title": "Illumina Ratv1 annotation data (chip illuminaRatv1)", "source.ver": "src/contrib/illuminaRatv1.db_1.16.1.tar.gz", "Imports": [ "methods", "AnnotationDbi", "AnnotationForge" ], "NeedsCompilation": "no", "manufacturer": "Illumina", "Suggests": [ "annotate", "RUnit" ], "Package": "illuminaRatv1.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "ChipDb", "IlluminaChip", "Rattus_norvegicus", "illuminaRatv1" ], "Description": "Illumina Ratv1 annotation data (chip illuminaRatv1) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/illuminaRatv1.db_1.16.1.zip" }, "human550v3bCrlmm": { "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/human550v3bCrlmm_1.0.4.tgz", "Version": "1.0.4", "hasINSTALL": false, "MD5sum": "20e6b008fab5e1084354c87ad50d18a8", "Maintainer": "Matthew Ritchie ", "Author": "Rafael A Irizarry", "Title": "Metadata for fast genotyping with the 'crlmm' package", "source.ver": "src/contrib/human550v3bCrlmm_1.0.4.tar.gz", "Imports": [ "utils" ], "NeedsCompilation": "no", "Package": "human550v3bCrlmm", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Package with metadata for genotyping Illumina 550k arrays using the 'crlmm' package.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/human550v3bCrlmm_1.0.4.zip" }, "ecoliK12.db0": { "organism": "Escherichia coli", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.1.28)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/ecoliK12.db0_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "e740fb59bf5785c6f2aec9d94b9613d9", "Maintainer": "Biocore Team c/o BioC user list ", "Author": "Marc Carlson, Herve Pages", "Title": "Base Level Annotation databases for E coli K12 Strain", "source.ver": "src/contrib/ecoliK12.db0_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "Package": "ecoliK12.db0", "License": "The Artistic License, Version 2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Escherichia_coli", "db0" ], "Description": "Base annotation databases for E coli K12 Strain, intended ONLY to be used by AnnotationDbi to produce regular annotation packages.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/ecoliK12.db0_2.8.0.zip" }, "soybeancdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/soybeancdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "411dc5adb73a4c83004e68b98c7e926e", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "soybeancdf", "source.ver": "src/contrib/soybeancdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "soybeancdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Heterodera_glycines", "Phytophthora_sojae", "cdf", "soybean" ], "Description": "A package containing an environment representing the Soybean.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/soybeancdf_2.11.0.zip" }, "rgu34a.db": { "organism": "Rattus norvegicus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.20.2)", "org.Rn.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/rgu34a.db_2.8.1.tgz", "Version": "2.8.1", "hasINSTALL": false, "MD5sum": "1acfaf3390ac2b6798fbd5c493a8fed0", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Affymetrix Rat Genome U34 Set annotation data (chip rgu34a)", "source.ver": "src/contrib/rgu34a.db_2.8.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate", "RUnit" ], "Package": "rgu34a.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Rattus_norvegicus", "rgu34a" ], "Description": "Affymetrix Rat Genome U34 Set annotation data (chip rgu34a) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/rgu34a.db_2.8.1.zip" }, "rat2302cdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/rat2302cdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "e130a646396c105daadd4ec533168bd6", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "rat2302cdf", "source.ver": "src/contrib/rat2302cdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "rat2302cdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Rattus_norvegicus", "cdf", "rat2302" ], "Description": "A package containing an environment representing the Rat230_2.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/rat2302cdf_2.11.0.zip" }, "pd.mirna.3.0": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.mirna.3.0_3.6.0.tgz", "Version": "3.6.0", "hasINSTALL": false, "MD5sum": "4f0d496592d232b0733c334c22d4b214", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for Affymetrix miRNA-3_0", "source.ver": "src/contrib/pd.mirna.3.0_3.6.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.mirna.3.0", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for Affymetrix miRNA-3_0", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.mirna.3.0_3.6.0.zip" }, "org.Tgondii.eg.db": { "organism": "Toxoplasma gondii", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.16.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/org.Tgondii.eg.db_1.0.tgz", "Version": "1.0", "hasINSTALL": false, "MD5sum": "8b20ad76ae2005f5311889cfbc0d0531", "Maintainer": "Olivier Lucas ", "Author": "Olivier Lucas ", "Title": "Genome wide annotation for Toxoplasma gondii", "source.ver": "src/contrib/org.Tgondii.eg.db_1.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "Suggests": [ "annotate" ], "Package": "org.Tgondii.eg.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "annotation" ], "Description": "Genome wide annotation for Toxoplasma gondii, primarily based on mapping using Entrez Gene identifiers.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/org.Tgondii.eg.db_1.0.zip" }, "hom.Sc.inp.db": { "organism": "Saccharomyces cerevisiae", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hom.Sc.inp.db_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "d559af16b46d8940ed96534a816734ea", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson, Herve Pages", "Title": "Homology information for Saccharomyces cerevisiae from Inparanoid", "source.ver": "src/contrib/hom.Sc.inp.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "Package": "hom.Sc.inp.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "InparanoidDb", "Saccharomyces_cerevisiae" ], "Description": "Homology information for Saccharomyces cerevisiae from Inparanoid assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hom.Sc.inp.db_2.8.0.zip" }, "chickenprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/chickenprobe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "e7aecfb05582069f011221bd8b9be466", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type chicken", "source.ver": "src/contrib/chickenprobe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "chickenprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Gallus_gallus", "chicken", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Chicken\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/chickenprobe_2.11.0.zip" }, "hgu133plus2.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)", "org.Hs.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hgu133plus2.db_2.8.0.tgz", "Version": "2.8.0", "dependsOnMe": [ "GeneGroupAnalysis", "humanStemCell" ], "hasINSTALL": false, "MD5sum": "6651de6fd81bf0639694d90c91975ec1", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Affymetrix Human Genome U133 Plus 2.0 Array annotation data (chip hgu133plus2)", "suggestsMe": [ "graphite", "KEGGgraph", "pcaGoPromoter", "PREDAsampledata", "rheumaticConditionWOLLBOLD", "rtracklayer", "SPIA" ], "source.ver": "src/contrib/hgu133plus2.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate", "RUnit" ], "Package": "hgu133plus2.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Homo_sapiens", "hgu133plus2" ], "Description": "Affymetrix Human Genome U133 Plus 2.0 Array annotation data (chip hgu133plus2) assembled using data from public repositories", "hasLICENSE": false, "importsMe": [ "PADOG" ], "win.binary.ver": "bin/windows/contrib/2.16/hgu133plus2.db_2.8.0.zip" }, "ragene10stprobeset.db": { "organism": "Rattus norvegicus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.15.34)", "org.Rn.eg.db (>= 2.6.3)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/ragene10stprobeset.db_7.0.1.tgz", "Version": "7.0.1", "hasINSTALL": false, "MD5sum": "a416bf1d71b21ffcbe57474886e093d6", "Maintainer": "Li, Arthur ", "Author": "Arthur Li", "Title": "Affymetrix Rat Gene 1.0-ST Array Probeset Revision 7 annotation data (chip ragene10stprobeset)", "source.ver": "src/contrib/ragene10stprobeset.db_7.0.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate" ], "Package": "ragene10stprobeset.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Rattus_norvegicus", "ragene10stprobeset" ], "Description": "Affymetrix Rat Gene 1.0-ST Array Probeset Revision 7 annotation data (chip ragene10stprobeset) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/ragene10stprobeset.db_7.0.1.zip" }, "BSgenome.Mmusculus.UCSC.mm8": { "organism": "Mus musculus", "Depends": [ "BSgenome (>= 1.19.2)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/BSgenome.Mmusculus.UCSC.mm8_1.3.17.tgz", "Version": "1.3.17", "hasINSTALL": false, "MD5sum": "41e081be6e3fc231f459c84d69b0ce95", "Maintainer": "Biocore Team c/o BioC user list ", "Author": "H. Pages", "Title": "Mus musculus (Mouse) full genome (UCSC version mm8)", "source.ver": "src/contrib/BSgenome.Mmusculus.UCSC.mm8_1.3.17.tar.gz", "Imports": [ "BSgenome" ], "NeedsCompilation": "no", "Package": "BSgenome.Mmusculus.UCSC.mm8", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Genetics", "Mus_musculus" ], "Description": "Mus musculus (Mouse) full genome as provided by UCSC (mm8, Feb. 2006) and stored in Biostrings objects.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/BSgenome.Mmusculus.UCSC.mm8_1.3.17.zip" }, "mouse430a2probe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/mouse430a2probe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "0c4f71b2fd7692ae22db8fbf475b8cd1", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type mouse430a2", "source.ver": "src/contrib/mouse430a2probe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "mouse430a2probe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "mouse430a2", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Mouse430A\\_2\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/mouse430a2probe_2.11.0.zip" }, "chicken.db": { "organism": "Gallus gallus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.20.2)", "org.Gg.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/chicken.db_2.8.1.tgz", "Version": "2.8.1", "hasINSTALL": false, "MD5sum": "90dd075f3c98592d6e6fb5ae6fb75562", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Affymetrix chicken annotation data (chip chicken)", "source.ver": "src/contrib/chicken.db_2.8.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate", "RUnit" ], "Package": "chicken.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Gallus_gallus", "chicken" ], "Description": "Affymetrix chicken annotation data (chip chicken) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/chicken.db_2.8.1.zip" }, "BSgenome.Tgondii.ToxoDB.7.0": { "organism": "Toxoplasma gondii", "Depends": [ "BSgenome (>= 1.21.3)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/BSgenome.Tgondii.ToxoDB.7.0_0.99.0.tgz", "Version": "0.99.0", "hasINSTALL": false, "MD5sum": "8f204871f73f8d1c5194f3748e28878e", "Maintainer": "Matthew Croken ", "Author": "Matthew Croken , Olivier Lucas ", "Title": "Toxoplasma gondii ME49 (ToxoDB-7.0)", "source.ver": "src/contrib/BSgenome.Tgondii.ToxoDB.7.0_0.99.0.tar.gz", "Imports": [ "BSgenome" ], "NeedsCompilation": "no", "Package": "BSgenome.Tgondii.ToxoDB.7.0", "License": "GPL 3", "hasREADME": false, "biocViews": [ "AnnotationData", "Genetics", "Toxoplasma_gondii" ], "Description": "Toxoplasma gondii ME49 genome Release 7.0 available at http://www.toxodb.org", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/BSgenome.Tgondii.ToxoDB.7.0_0.99.0.zip" }, "mgu74ccdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/mgu74ccdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "81aa88a6aad1daf75b5128e4887ac48b", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "mgu74ccdf", "source.ver": "src/contrib/mgu74ccdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "mgu74ccdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "cdf", "mgu74c" ], "Description": "A package containing an environment representing the MG_U74C.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/mgu74ccdf_2.11.0.zip" }, "canine2.db": { "organism": "Canis familiaris", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.20.2)", "org.Cf.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/canine2.db_2.8.1.tgz", "Version": "2.8.1", "hasINSTALL": false, "MD5sum": "82e79896db73ae301206dee8d9f8dad3", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Affymetrix canine2 annotation data (chip canine2)", "source.ver": "src/contrib/canine2.db_2.8.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate", "RUnit" ], "Package": "canine2.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Canis_familiaris", "ChipDb", "canine2" ], "Description": "Affymetrix canine2 annotation data (chip canine2) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/canine2.db_2.8.1.zip" }, "BSgenome.Mmusculus.UCSC.mm9": { "organism": "Mus musculus", "Depends": [ "BSgenome (>= 1.25.4)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/BSgenome.Mmusculus.UCSC.mm9_1.3.19.tgz", "Version": "1.3.19", "hasINSTALL": false, "MD5sum": "b8e66972ec7899afe6ac314af9c894bb", "Maintainer": "Bioconductor Package Maintainer ", "Author": "The Bioconductor Dev Team", "Title": "Mus musculus (Mouse) full genome (UCSC version mm9)", "suggestsMe": [ "chipseq", "MEDME", "MiRaGE", "oneChannelGUI", "r3Cseq" ], "source.ver": "src/contrib/BSgenome.Mmusculus.UCSC.mm9_1.3.19.tar.gz", "Imports": [ "BSgenome" ], "NeedsCompilation": "no", "Package": "BSgenome.Mmusculus.UCSC.mm9", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Genetics", "Mus_musculus" ], "Description": "Mus musculus (Mouse) full genome as provided by UCSC (mm9, Jul. 2007) and stored in Biostrings objects.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/BSgenome.Mmusculus.UCSC.mm9_1.3.19.zip" }, "org.Cf.eg.db": { "organism": "Canis familiaris", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/org.Cf.eg.db_2.8.0.tgz", "Version": "2.8.0", "dependsOnMe": [ "canine.db", "canine2.db" ], "hasINSTALL": false, "MD5sum": "36629dc312274c4585e24337da1e3791", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Genome wide annotation for Canine", "suggestsMe": [ "MLP" ], "source.ver": "src/contrib/org.Cf.eg.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "Suggests": [ "annotate", "RUnit" ], "Package": "org.Cf.eg.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Canis_familiaris", "OrgDb" ], "Description": "Genome wide annotation for Canine, primarily based on mapping using Entrez Gene identifiers.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/org.Cf.eg.db_2.8.0.zip" }, "pd.yg.s98": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.yg.s98_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "4ce0acf24c5bccb85ef882198c4f5b8d", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name YG_S98", "source.ver": "src/contrib/pd.yg.s98_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.yg.s98", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name YG_S98", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.yg.s98_1.8.0.zip" }, "celegans.db": { "organism": "Caenorhabditis elegans", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.20.2)", "org.Ce.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/celegans.db_2.8.1.tgz", "Version": "2.8.1", "hasINSTALL": false, "MD5sum": "91371cdc25e679053af3fee29a64328b", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Affymetrix celegans annotation data (chip celegans)", "source.ver": "src/contrib/celegans.db_2.8.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate", "RUnit" ], "Package": "celegans.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Caenorhabditis_elegans", "ChipDb", "celegans" ], "Description": "Affymetrix celegans annotation data (chip celegans) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/celegans.db_2.8.1.zip" }, "gahgu133plus2cdf": { "Depends": [ "utils" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/gahgu133plus2cdf_2.2.0.tgz", "Version": "2.2.0", "dependsOnMe": [ "PREDAsampledata" ], "hasINSTALL": false, "MD5sum": "9ea82b126f9ad722b9891718326458a7", "Maintainer": "Francesco Ferrari ", "Author": "Francesco Ferrari, Stefania Bortoluzzi, Alessandro Coppe, Alexandra Sirota, Marilyn Safran, Michael Shmoish, Sergio Ferrari, Doron Lancet, Gian Antonio Danieli and Silvio Bicciato", "Title": "gahgu133plus2cdf", "source.ver": "src/contrib/gahgu133plus2cdf_2.2.0.tar.gz", "NeedsCompilation": "no", "Package": "gahgu133plus2cdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "GACustomCDF", "Homo Sapiens", "gahgu133plus2" ], "Description": "A package containing an environment representing the gahgu133plus2.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/gahgu133plus2cdf_2.2.0.zip" }, "cMAP": { "Depends": [ "R(>= 2.4.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/cMAP_1.15.1.tgz", "Version": "1.15.1", "dependsOnMe": [ "pathRender" ], "hasINSTALL": false, "MD5sum": "dbf8df4d4540151936884e1c5d747bcf", "Maintainer": "Biocore Data Team ", "Author": "Ting-Yuan Liu, ChenWei Lin, Seth Falcon, Jianhua Zhang, James W. MacDonald", "Title": "A data package containing annotation data for cMAP", "source.ver": "src/contrib/cMAP_1.15.1.tar.gz", "NeedsCompilation": "no", "Package": "cMAP", "License": "LGPL", "biocViews": [ "AnnotationData" ], "hasREADME": false, "Description": "Annotation data file for cMAP assembled using data from public data repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/cMAP_1.15.1.zip" }, "hgu133acdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hgu133acdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "336d8981ed4a3c20ef0536f51f1ea9a0", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "hgu133acdf", "suggestsMe": [ "affydata", "altcdfenvs", "AmpAffyExample", "frmaTools" ], "source.ver": "src/contrib/hgu133acdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "hgu133acdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "hgu133a" ], "Description": "A package containing an environment representing the HG-U133A.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hgu133acdf_2.11.0.zip" }, "rguatlas4k.db": { "organism": "Rattus norvegicus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.20.2)", "org.Rn.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/rguatlas4k.db_2.8.1.tgz", "Version": "2.8.1", "hasINSTALL": false, "MD5sum": "955171c737d7c1d0a2d8521647b744e5", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Clontech BD Atlas Long Oligos Rat 4K annotation data (chip rguatlas4k)", "source.ver": "src/contrib/rguatlas4k.db_2.8.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Clontech", "Suggests": [ "annotate", "RUnit" ], "Package": "rguatlas4k.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "ChipDb", "ClontechChip", "Rattus_norvegicus", "rguatlas4k" ], "Description": "Clontech BD Atlas Long Oligos Rat 4K annotation data (chip rguatlas4k) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/rguatlas4k.db_2.8.1.zip" }, "pd.sugar.cane": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.sugar.cane_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "ea21cd6d5c3c97a841a279a36e3a25ff", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name Sugar_Cane", "source.ver": "src/contrib/pd.sugar.cane_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.sugar.cane", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name Sugar_Cane", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.sugar.cane_1.8.0.zip" }, "pd.hg18.60mer.expr": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.hg18.60mer.expr_3.2.0.tgz", "Version": "3.2.0", "hasINSTALL": false, "MD5sum": "48100b47c15b1129ec1e8908102c9cfd", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for NimbleGen hg18_60mer_expr", "suggestsMe": [ "oligo", "oligoData" ], "source.ver": "src/contrib/pd.hg18.60mer.expr_3.2.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.hg18.60mer.expr", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for NimbleGen hg18_60mer_expr", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.hg18.60mer.expr_3.2.0.zip" }, "h20kcod.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.40)", "org.Hs.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/h20kcod.db_2.14.0.tgz", "Version": "2.14.0", "hasINSTALL": false, "MD5sum": "a370942a9eecdabee393f0b8028ac348", "Maintainer": "Diego Diez ", "Author": "Diego Diez", "Title": "GE CodeLink UniSet Human 20k I Bioarray annotation data (chip h20kcod)", "source.ver": "src/contrib/h20kcod.db_2.14.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "GE", "Suggests": [ "annotate", "RUnit" ], "Package": "h20kcod.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "ChipDb", "GEChip", "Homo_sapiens", "h20kcod" ], "Description": "GE CodeLink UniSet Human 20k I Bioarray annotation data (chip h20kcod) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/h20kcod.db_2.14.0.zip" }, "hthgu133a.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)", "org.Hs.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hthgu133a.db_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "c93cb23a761aa570a6ddbd4c9b30f9bc", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Affymetrix HT Human Genome U133 Array Plate Set annotation data (chip hthgu133a)", "source.ver": "src/contrib/hthgu133a.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate", "RUnit" ], "Package": "hthgu133a.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Homo_sapiens", "hthgu133a" ], "Description": "Affymetrix HT Human Genome U133 Array Plate Set annotation data (chip hthgu133a) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hthgu133a.db_2.8.0.zip" }, "ratCHRLOC": { "organism": "Rattus norvegicus", "Depends": [ "R(>= 2.7.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/ratCHRLOC_2.1.6.tgz", "Version": "2.1.6", "hasINSTALL": false, "MD5sum": "6fecff4821a5a47e3bd38a2ff78173d5", "Maintainer": "Biocore Data Team ", "Author": "Ting-Yuan Liu, ChenWei Lin, Seth Falcon, Jianhua Zhang, James W. MacDonald", "Title": "A data package containing annotation data for ratCHRLOC", "source.ver": "src/contrib/ratCHRLOC_2.1.6.tar.gz", "NeedsCompilation": "no", "Package": "ratCHRLOC", "License": "The Artistic License, Version 2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "FunctionalAnnotation", "Rattus_norvegicus" ], "Description": "Annotation data file for ratCHRLOC assembled using data from public data repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/ratCHRLOC_2.1.6.zip" }, "pd.tomato": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.tomato_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "c3a7d8d8af8abe862aa9e7f943f60abd", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name Tomato", "source.ver": "src/contrib/pd.tomato_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.tomato", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name Tomato", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.tomato_1.8.0.zip" }, "hthgu133bcdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hthgu133bcdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "fc157899a97a217efadd43f7660c250c", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "hthgu133bcdf", "source.ver": "src/contrib/hthgu133bcdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "hthgu133bcdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "hthgu133b" ], "Description": "A package containing an environment representing the HT_HG-U133B.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hthgu133bcdf_2.11.0.zip" }, "LAPOINTE.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)", "org.Hs.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/LAPOINTE.db_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "134a92ad6f656ea368eebf033c3d2b81", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "A package containing metadata for LAPOINTE arrays", "source.ver": "src/contrib/LAPOINTE.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "CUSTOM", "Suggests": [ "annotate", "RUnit" ], "Package": "LAPOINTE.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "CUSTOMChip", "ChipDb", "Homo_sapiens", "LAPOINTE" ], "Description": "A package containing metadata for LAPOINTE arrays assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/LAPOINTE.db_2.8.0.zip" }, "mu6500subdcdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/mu6500subdcdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "c0428818877facb4c29738de6bc4b42c", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "mu6500subdcdf", "source.ver": "src/contrib/mu6500subdcdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "mu6500subdcdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "cdf", "mu6500subd" ], "Description": "A package containing an environment representing the Mu6500subD.CDF file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/mu6500subdcdf_2.11.0.zip" }, "tomatocdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/tomatocdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "9441c5d895a0232ad3e00c4f2f0329c2", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "tomatocdf", "source.ver": "src/contrib/tomatocdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "tomatocdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Solanum_lycopersicum", "cdf", "tomato" ], "Description": "A package containing an environment representing the Tomato.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/tomatocdf_2.11.0.zip" }, "SNPlocs.Hsapiens.dbSNP.20111119": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.10)", "IRanges", "GenomicRanges" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/SNPlocs.Hsapiens.dbSNP.20111119_0.99.6.tgz", "Version": "0.99.6", "hasINSTALL": false, "MD5sum": "6c638368fa925b471d1eebbb1e62c616", "Maintainer": "H. Pages ", "Author": "Herve Pages", "Title": "SNP locations for Homo sapiens (dbSNP Build 135)", "suggestsMe": [ "FDb.InfiniumMethylation.hg19", "FDb.UCSC.snp135common.hg19" ], "source.ver": "src/contrib/SNPlocs.Hsapiens.dbSNP.20111119_0.99.6.tar.gz", "Imports": [ "methods", "IRanges", "GenomicRanges" ], "NeedsCompilation": "no", "Suggests": [ "Biostrings", "BSgenome (>= 1.16.1)", "BSgenome.Hsapiens.UCSC.hg19" ], "Package": "SNPlocs.Hsapiens.dbSNP.20111119", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Genetics", "Homo_sapiens" ], "Description": "SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 135. The source data files used for this package were created by NCBI on Nov 18-19, 2011, and contain SNPs mapped to reference genome GRCh37.p5. WARNING: Note that the GRCh37.p5 genome is a patched version of GRCh37 but the patch doesn't alter chromosomes 1-22, X, Y, MT. GRCh37 itself is the same as the hg19 genome from UCSC *except* for the mitochondrion chromosome. Therefore, the SNPs in this package can be \"injected\" in BSgenome.Hsapiens.UCSC.hg19 and they will land at the correct location but this injection will exclude chrM (i.e. nothing will be injected in that sequence).", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/SNPlocs.Hsapiens.dbSNP.20111119_0.99.6.zip" }, "rgug4130a.db": { "organism": "Rattus norvegicus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.20.2)", "org.Rn.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/rgug4130a.db_2.8.1.tgz", "Version": "2.8.1", "hasINSTALL": false, "MD5sum": "6749a224dd522886bd1397e3bbd839b3", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Agilent Rat annotation data (chip rgug4130a)", "source.ver": "src/contrib/rgug4130a.db_2.8.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Agilent", "Suggests": [ "annotate", "RUnit" ], "Package": "rgug4130a.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AgilentChip", "AnnotationData", "ChipDb", "Rattus_norvegicus", "rgug4130a" ], "Description": "Agilent Rat annotation data (chip rgug4130a) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/rgug4130a.db_2.8.1.zip" }, "rgu34aprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/rgu34aprobe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "ad49825de45dc627d42a9ad94cf87b24", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type rgu34a", "source.ver": "src/contrib/rgu34aprobe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "rgu34aprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Rattus_norvegicus", "probe", "rgu34a" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was RG-U34A\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/rgu34aprobe_2.11.0.zip" }, "hgubeta7.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)", "org.Hs.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hgubeta7.db_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "788c33d4ab66bf55dd0ce0cbed58dd40", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Unknown annotation data (chip hgubeta7)", "source.ver": "src/contrib/hgubeta7.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Unknown", "Suggests": [ "annotate", "RUnit" ], "Package": "hgubeta7.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "ChipDb", "CustomArray", "Homo_sapiens" ], "Description": "Unknown annotation data (chip hgubeta7) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hgubeta7.db_2.8.0.zip" }, "hgu133a2.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)", "org.Hs.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hgu133a2.db_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "a3709b2d7306e1dddff97c8c76590938", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Affymetrix Human Genome U133A 2.0 Array annotation data (chip hgu133a2)", "source.ver": "src/contrib/hgu133a2.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate", "RUnit" ], "Package": "hgu133a2.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Homo_sapiens", "hgu133a2" ], "Description": "Affymetrix Human Genome U133A 2.0 Array annotation data (chip hgu133a2) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hgu133a2.db_2.8.0.zip" }, "mu19ksubc.db": { "organism": "Mus musculus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.20.2)", "org.Mm.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/mu19ksubc.db_2.8.1.tgz", "Version": "2.8.1", "hasINSTALL": false, "MD5sum": "f4453e550bdf4fedf5d64aceb9c334cb", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Affymetrix Murine Genome 19k Set annotation data (chip mu19ksubc)", "source.ver": "src/contrib/mu19ksubc.db_2.8.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate", "RUnit" ], "Package": "mu19ksubc.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Mus_musculus", "mu19ksubc" ], "Description": "Affymetrix Murine Genome 19k Set annotation data (chip mu19ksubc) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/mu19ksubc.db_2.8.1.zip" }, "hgu133plus2probe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hgu133plus2probe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "ac2a0dd2aff6476d9722a834578a6a73", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type hgu133plus2", "suggestsMe": [ "frmaTools" ], "source.ver": "src/contrib/hgu133plus2probe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "hgu133plus2probe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "hgu133plus2", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG-U133\\_Plus\\_2\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hgu133plus2probe_2.11.0.zip" }, "hgfocusprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hgfocusprobe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "0629a9f01d8844a9b38d960f12981947", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type hgfocus", "source.ver": "src/contrib/hgfocusprobe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "hgfocusprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "hgfocus", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG-Focus\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hgfocusprobe_2.11.0.zip" }, "BSgenome.Athaliana.TAIR.TAIR9": { "organism": "Arabidopsis thaliana", "Depends": [ "BSgenome (>= 1.19.2)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/BSgenome.Athaliana.TAIR.TAIR9_1.3.18.tgz", "Version": "1.3.18", "hasINSTALL": false, "MD5sum": "01cb331b6961ce62aa212b576d0cbf94", "Maintainer": "Biocore Team c/o BioC user list ", "Author": "H. Pages", "Title": "Arabidopsis thaliana full genome (TAIR9)", "suggestsMe": [ "waveTiling" ], "source.ver": "src/contrib/BSgenome.Athaliana.TAIR.TAIR9_1.3.18.tar.gz", "Imports": [ "BSgenome" ], "NeedsCompilation": "no", "Package": "BSgenome.Athaliana.TAIR.TAIR9", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Arabidopsis_thaliana", "Genetics" ], "Description": "Arabidopsis thaliana full genome as provided by TAIR (TAIR9 Genome Release) and stored in Biostrings objects. Note that TAIR10 is an \"annotation release\" based on the same genome assembly as TAIR9.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/BSgenome.Athaliana.TAIR.TAIR9_1.3.18.zip" }, "TxDb.Hsapiens.UCSC.hg19.lincRNAsTranscripts": { "organism": "Homo sapiens", "Depends": [ "GenomicFeatures (>= 1.9.39)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/TxDb.Hsapiens.UCSC.hg19.lincRNAsTranscripts_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "c87c0edeb24c33c453d1034168a62dce", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Annotation package for TranscriptDb object(s)", "source.ver": "src/contrib/TxDb.Hsapiens.UCSC.hg19.lincRNAsTranscripts_2.8.0.tar.gz", "Imports": [ "GenomicFeatures", "AnnotationDbi" ], "NeedsCompilation": "no", "Package": "TxDb.Hsapiens.UCSC.hg19.lincRNAsTranscripts", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Genetics", "Homo_sapiens", "TranscriptDb" ], "Description": "Exposes an annotation databases generated from UCSC by exposing these as TranscriptDb objects", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/TxDb.Hsapiens.UCSC.hg19.lincRNAsTranscripts_2.8.0.zip" }, "TxDb.Dmelanogaster.UCSC.dm3.ensGene": { "organism": "Drosophila melanogaster", "Depends": [ "GenomicFeatures (>= 1.9.39)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/TxDb.Dmelanogaster.UCSC.dm3.ensGene_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "8ce9ae135482ccb3d55d4b0047c7162b", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Annotation package for TranscriptDb object(s)", "suggestsMe": [ "GenomicFeatures", "GenomicRanges", "Rsamtools" ], "source.ver": "src/contrib/TxDb.Dmelanogaster.UCSC.dm3.ensGene_2.8.0.tar.gz", "Imports": [ "GenomicFeatures", "AnnotationDbi" ], "NeedsCompilation": "no", "Package": "TxDb.Dmelanogaster.UCSC.dm3.ensGene", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Drosophila_melanogaster", "Genetics", "TranscriptDb" ], "Description": "Exposes an annotation databases generated from UCSC by exposing these as TranscriptDb objects", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/TxDb.Dmelanogaster.UCSC.dm3.ensGene_2.8.0.zip" }, "pd.mouse430.2": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.mouse430.2_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "5624e479dfed949be1228e7c28fdb831", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name Mouse430_2", "source.ver": "src/contrib/pd.mouse430.2_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.mouse430.2", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name Mouse430_2", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.mouse430.2_1.8.0.zip" }, "human370v1cCrlmm": { "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/human370v1cCrlmm_1.0.2.tgz", "Version": "1.0.2", "hasINSTALL": false, "MD5sum": "9ec4192f533faee2b14484de02548075", "Maintainer": "Matthew Ritchie ", "Author": "Rafael A Irizarry", "Title": "Metadata for fast genotyping with the 'crlmm' package", "suggestsMe": [ "oligoClasses" ], "source.ver": "src/contrib/human370v1cCrlmm_1.0.2.tar.gz", "Imports": [ "utils" ], "NeedsCompilation": "no", "Package": "human370v1cCrlmm", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Package with metadata for genotyping Illumina 370k arrays using the 'crlmm' package.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/human370v1cCrlmm_1.0.2.zip" }, "PolyPhen.Hsapiens.dbSNP131": { "organism": "Homo sapiens", "Depends": [ "VariantAnnotation", "RSQLite (>= 0.11.0)" ], "hasNEWS": true, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/PolyPhen.Hsapiens.dbSNP131_1.0.2.tgz", "Version": "1.0.2", "hasINSTALL": false, "MD5sum": "763e9cd4afd97b36f7e659f5454ef61f", "Maintainer": "Valerie Obenchain ", "Author": "Valerie Obenchain", "Title": "PolyPhen Predictions for Homo sapiens dbSNP build 131", "suggestsMe": [ "VariantAnnotation" ], "source.ver": "src/contrib/PolyPhen.Hsapiens.dbSNP131_1.0.2.tar.gz", "Imports": [ "AnnotationDbi" ], "NeedsCompilation": "no", "Package": "PolyPhen.Hsapiens.dbSNP131", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Genetics", "Homo_sapiens" ], "Description": "Database of PolyPhen predictions for Homo sapiens dbSNP build 131", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/PolyPhen.Hsapiens.dbSNP131_1.0.2.zip" }, "pd.mapping50k.hind240": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.mapping50k.hind240_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "236fd41ad0f27e30c5fbc04e48885c14", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for Affymetrix Mapping50K_Hind240", "suggestsMe": [ "ITALICS", "oligoClasses", "VanillaICE" ], "source.ver": "src/contrib/pd.mapping50k.hind240_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.mapping50k.hind240", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for Affymetrix Mapping50K_Hind240", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.mapping50k.hind240_1.8.0.zip" }, "hu35ksubb.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)", "org.Hs.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hu35ksubb.db_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "a116eee800c181e2533eff2e620ca472", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Affymetrix Human Genome HU35K Set annotation data (chip hu35ksubb)", "source.ver": "src/contrib/hu35ksubb.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate", "RUnit" ], "Package": "hu35ksubb.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Homo_sapiens", "hu35ksubb" ], "Description": "Affymetrix Human Genome HU35K Set annotation data (chip hu35ksubb) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hu35ksubb.db_2.8.0.zip" }, "ragene10sttranscriptcluster.db": { "organism": "Rattus norvegicus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.15.34)", "org.Rn.eg.db (>= 2.6.3)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/ragene10sttranscriptcluster.db_7.0.1.tgz", "Version": "7.0.1", "hasINSTALL": false, "MD5sum": "3a1b9484080554bf114b1075cac40928", "Maintainer": "Li, Arthur ", "Author": "Arthur Li", "Title": "Affymetrix Rat Gene 1.0-ST Array Transcriptcluster Revision 7 annotation data (chip ragene10sttranscriptcluster)", "suggestsMe": [ "oneChannelGUI" ], "source.ver": "src/contrib/ragene10sttranscriptcluster.db_7.0.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate" ], "Package": "ragene10sttranscriptcluster.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Rattus_norvegicus", "ragene10sttranscriptcluster" ], "Description": "Affymetrix Rat Gene 1.0-ST Array Transcriptcluster Revision 7 annotation data (chip ragene10sttranscriptcluster) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/ragene10sttranscriptcluster.db_7.0.1.zip" }, "rae230bcdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/rae230bcdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "d58ffbd04a51d339f7d3c1e6590eca49", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "rae230bcdf", "source.ver": "src/contrib/rae230bcdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "rae230bcdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Rattus_norvegicus", "cdf", "rae230b" ], "Description": "A package containing an environment representing the RAE230B.CDF file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/rae230bcdf_2.11.0.zip" }, "rae230a.db": { "organism": "Rattus norvegicus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.20.2)", "org.Rn.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/rae230a.db_2.8.1.tgz", "Version": "2.8.1", "hasINSTALL": false, "MD5sum": "56116c3ffe8917e9fc355936025a7aaf", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Affymetrix Rat Expression Set 230 annotation data (chip rae230a)", "suggestsMe": [ "annotate" ], "source.ver": "src/contrib/rae230a.db_2.8.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate", "RUnit" ], "Package": "rae230a.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Rattus_norvegicus", "rae230a" ], "Description": "Affymetrix Rat Expression Set 230 annotation data (chip rae230a) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/rae230a.db_2.8.1.zip" }, "htmg430pmprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/htmg430pmprobe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "977deccb77b09a65e18eaf33b1f42fb0", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type htmg430pm", "source.ver": "src/contrib/htmg430pmprobe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "htmg430pmprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "htmg430pm", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HT\\_MG-430\\_PM\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/htmg430pmprobe_2.11.0.zip" }, "moe430acdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/moe430acdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "43c3fdc98c2452058056255f2dea32eb", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "moe430acdf", "source.ver": "src/contrib/moe430acdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "moe430acdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "cdf", "moe430a" ], "Description": "A package containing an environment representing the MOE430A.CDF file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/moe430acdf_2.11.0.zip" }, "BSgenome.Amellifera.BeeBase.assembly4": { "organism": "Apis mellifera", "Depends": [ "BSgenome (>= 1.14.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/BSgenome.Amellifera.BeeBase.assembly4_1.3.16.tgz", "Version": "1.3.16", "hasINSTALL": false, "MD5sum": "a251a76a3a3595e107c02b2b5e725a3f", "Maintainer": "Biocore Team c/o BioC user list ", "Author": "H. Pages", "Title": "Apis mellifera (Honey Bee) full genome (BeeBase assembly4)", "source.ver": "src/contrib/BSgenome.Amellifera.BeeBase.assembly4_1.3.16.tar.gz", "Imports": [ "BSgenome" ], "NeedsCompilation": "no", "Package": "BSgenome.Amellifera.BeeBase.assembly4", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Apis_mellifera", "Genetics" ], "Description": "Apis mellifera (Honey Bee) full genome as provided by BeeBase (assembly4, Feb. 2008) and stored in Biostrings objects.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/BSgenome.Amellifera.BeeBase.assembly4_1.3.16.zip" }, "htratfocusprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/htratfocusprobe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "a40273818e87eb6db3201f82b9af94f4", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type htratfocus", "source.ver": "src/contrib/htratfocusprobe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "htratfocusprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Rattus_norvegicus", "htratfocus", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HT\\_Rat-Focus\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/htratfocusprobe_2.11.0.zip" }, "mgu74av2cdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/mgu74av2cdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "d2d7d77ef4f580e11998d4a7c10a6f70", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "mgu74av2cdf", "source.ver": "src/contrib/mgu74av2cdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "mgu74av2cdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "cdf", "mgu74av2" ], "Description": "A package containing an environment representing the MG_U74Av2.CDF file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/mgu74av2cdf_2.11.0.zip" }, "hu35ksuba.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)", "org.Hs.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hu35ksuba.db_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "0a92d65ac41cc9e5250d06a0d66c410e", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Affymetrix Human Genome HU35K Set annotation data (chip hu35ksuba)", "source.ver": "src/contrib/hu35ksuba.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate", "RUnit" ], "Package": "hu35ksuba.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Homo_sapiens", "hu35ksuba" ], "Description": "Affymetrix Human Genome HU35K Set annotation data (chip hu35ksuba) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hu35ksuba.db_2.8.0.zip" }, "rgu34bprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/rgu34bprobe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "78b273e14ab0d87c5cc6f47d363e8154", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type rgu34b", "source.ver": "src/contrib/rgu34bprobe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "rgu34bprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Rattus_norvegicus", "probe", "rgu34b" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was RG-U34B\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/rgu34bprobe_2.11.0.zip" }, "pd.feinberg.hg18.me.hx1": { "Depends": [ "R (>= 2.11.0)", "methods", "RSQLite (>= 0.7-1)", "oligoClasses (>= 1.9.30)", "oligo (>= 1.11.18)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.feinberg.hg18.me.hx1_0.99.2.tgz", "Version": "0.99.2", "hasINSTALL": false, "MD5sum": "18bc87b47ff18b1619eb52c295ff2895", "Maintainer": "Martin Aryee ", "Author": "Martin Aryee", "Title": "Platform Design Info for NimbleGen feinberg_hg18_me_hx1", "source.ver": "src/contrib/pd.feinberg.hg18.me.hx1_0.99.2.tar.gz", "Imports": [ "Biostrings (>= 2.13.50)", "IRanges (>= 1.3.89)" ], "NeedsCompilation": "no", "Package": "pd.feinberg.hg18.me.hx1", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for NimbleGen feinberg_hg18_me_hx1", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.feinberg.hg18.me.hx1_0.99.2.zip" }, "hom.Mm.inp.db": { "organism": "Mus musculus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hom.Mm.inp.db_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "ad42978cc16f73432d6f6e3fd92b0465", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson, Herve Pages", "Title": "Homology information for Mus musculus from Inparanoid", "suggestsMe": [ "RpsiXML" ], "source.ver": "src/contrib/hom.Mm.inp.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "Package": "hom.Mm.inp.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "InparanoidDb", "Mus_musculus" ], "Description": "Homology information for Mus musculus from Inparanoid assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hom.Mm.inp.db_2.8.0.zip" }, "BSgenome.Celegans.UCSC.ce10": { "organism": "Caenorhabditis elegans", "Depends": [ "BSgenome (>= 1.25.4)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/BSgenome.Celegans.UCSC.ce10_1.3.19.tgz", "Version": "1.3.19", "hasINSTALL": false, "MD5sum": "898d8d317c43bf24444cc7e3397e9c4d", "Maintainer": "Bioconductor Package Maintainer ", "Author": "The Bioconductor Dev Team", "Title": "Caenorhabditis elegans (Worm) full genome (UCSC version ce10)", "source.ver": "src/contrib/BSgenome.Celegans.UCSC.ce10_1.3.19.tar.gz", "Imports": [ "BSgenome" ], "NeedsCompilation": "no", "Package": "BSgenome.Celegans.UCSC.ce10", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Caenorhabditis_elegans", "Genetics" ], "Description": "Caenorhabditis elegans (Worm) full genome as provided by UCSC (ce10, Oct. 2010) and stored in Biostrings objects.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/BSgenome.Celegans.UCSC.ce10_1.3.19.zip" }, "nugomm1a520177cdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/nugomm1a520177cdf_2.6.0.tgz", "Version": "2.6.0", "hasINSTALL": false, "MD5sum": "3760203e56aca8f75ab12e9308778dde", "Maintainer": "Philip de Groot ", "Author": "Philip de Groot", "Title": "nugomm1a520177cdf", "source.ver": "src/contrib/nugomm1a520177cdf_2.6.0.tar.gz", "NeedsCompilation": "no", "Package": "nugomm1a520177cdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "cdf", "nugomm1a520177" ], "Description": "A package containing an environment representing the NuGO_Mm1a520177.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/nugomm1a520177cdf_2.6.0.zip" }, "poplarprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/poplarprobe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "460607d7782299557194117f7907c47f", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type poplar", "source.ver": "src/contrib/poplarprobe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "poplarprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Populus_sp", "poplar", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Poplar\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/poplarprobe_2.11.0.zip" }, "pd.ecoli": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.ecoli_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "7baa2afbc1e5b37f7d6ec4bd237c433d", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name Ecoli", "source.ver": "src/contrib/pd.ecoli_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.ecoli", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name Ecoli", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.ecoli_1.8.0.zip" }, "pd.barley1": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.barley1_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "db7e051b3152de0019356a93017c893e", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name Barley1", "source.ver": "src/contrib/pd.barley1_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.barley1", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name Barley1", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.barley1_1.8.0.zip" }, "h10kcod.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.40)", "org.Hs.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/h10kcod.db_2.14.0.tgz", "Version": "2.14.0", "hasINSTALL": false, "MD5sum": "9543a0ef6ba80720f135c41bc9a3fdc3", "Maintainer": "Diego Diez ", "Author": "Diego Diez", "Title": "GE CodeLink UniSet Human I Bioarray (~10 000 human genes) annotation data (chip h10kcod)", "source.ver": "src/contrib/h10kcod.db_2.14.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "GE", "Suggests": [ "annotate", "RUnit" ], "Package": "h10kcod.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "ChipDb", "GEChip", "Homo_sapiens", "h10kcod" ], "Description": "GE CodeLink UniSet Human I Bioarray (~10 000 human genes) annotation data (chip h10kcod) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/h10kcod.db_2.14.0.zip" }, "BSgenome.Ggallus.UCSC.galGal3": { "organism": "Gallus gallus", "Depends": [ "BSgenome (>= 1.25.1)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/BSgenome.Ggallus.UCSC.galGal3_1.3.18.tgz", "Version": "1.3.18", "hasINSTALL": false, "MD5sum": "4dbf13f8a570c66cf01fd2dbc0062bf8", "Maintainer": "Bioconductor Package Maintainer ", "Author": "The Bioconductor Dev Team", "Title": "Gallus gallus (Chicken) full genome (UCSC version galGal3)", "source.ver": "src/contrib/BSgenome.Ggallus.UCSC.galGal3_1.3.18.tar.gz", "Imports": [ "BSgenome" ], "NeedsCompilation": "no", "Package": "BSgenome.Ggallus.UCSC.galGal3", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Gallus_gallus", "Genetics" ], "Description": "Gallus gallus (Chicken) full genome as provided by UCSC (galGal3, May 2006) and stored in Biostrings objects.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/BSgenome.Ggallus.UCSC.galGal3_1.3.18.zip" }, "mi16cod.db": { "organism": "Mus musculus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.40)", "org.Hs.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/mi16cod.db_2.14.0.tgz", "Version": "2.14.0", "hasINSTALL": false, "MD5sum": "3f06baff555875b33af906fa9370fc0d", "Maintainer": "Diego Diez ", "Author": "Diego Diez", "Title": "GE CodeLink Mouse Inflammation 16 Bioarray annotation data (chip mi16cod)", "source.ver": "src/contrib/mi16cod.db_2.14.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "GE", "Suggests": [ "annotate", "RUnit" ], "Package": "mi16cod.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "ChipDb", "GEChip", "Mus_musculus", "mi16cod" ], "Description": "GE CodeLink Mouse Inflammation 16 Bioarray annotation data (chip mi16cod) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/mi16cod.db_2.14.0.zip" }, "gahgu95bcdf": { "Depends": [ "utils" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/gahgu95bcdf_2.2.0.tgz", "Version": "2.2.0", "hasINSTALL": false, "MD5sum": "370150424fb7cc4b0870b630578b7cb9", "Maintainer": "Francesco Ferrari ", "Author": "Francesco Ferrari, Stefania Bortoluzzi, Alessandro Coppe, Alexandra Sirota, Marilyn Safran, Michael Shmoish, Sergio Ferrari, Doron Lancet, Gian Antonio Danieli and Silvio Bicciato", "Title": "gahgu95bcdf", "source.ver": "src/contrib/gahgu95bcdf_2.2.0.tar.gz", "NeedsCompilation": "no", "Package": "gahgu95bcdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "GACustomCDF", "Homo Sapiens", "gahgu95b" ], "Description": "A package containing an environment representing the gahgu95b.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/gahgu95bcdf_2.2.0.zip" }, "ath1121501probe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/ath1121501probe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "2d9569e2aebf56be17ae56005a5a9d52", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type ath1121501", "source.ver": "src/contrib/ath1121501probe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "ath1121501probe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Arabidopsis_thaliana", "ath1121501", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was ATH1-121501\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/ath1121501probe_2.11.0.zip" }, "JazaeriMetaData.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)", "org.Hs.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/JazaeriMetaData.db_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "94cdec3b4f4ee5337001309fdf70bdc2", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "A data package containing annotation data for JazaeriMetaData", "source.ver": "src/contrib/JazaeriMetaData.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "National Cancer Institute", "Suggests": [ "annotate", "RUnit" ], "Package": "JazaeriMetaData.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "ChipDb", "Homo_sapiens", "JazaeriMetaData", "National Cancer InstituteChip" ], "Description": "A data package containing annotation data for JazaeriMetaData assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/JazaeriMetaData.db_2.8.0.zip" }, "yeast2probe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/yeast2probe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "ea2eda9e9320e9cec8a9f9a65b6a7bb9", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type yeast2", "source.ver": "src/contrib/yeast2probe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "yeast2probe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Saccharomyces_cerevisiae", "probe", "yeast2" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Yeast\\_2\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/yeast2probe_2.11.0.zip" }, "pd.maize": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.maize_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "6e921cf2a72b7f738d7b14e5e1ffdfb2", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name Maize", "source.ver": "src/contrib/pd.maize_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.maize", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name Maize", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.maize_1.8.0.zip" }, "hcg110.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)", "org.Hs.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hcg110.db_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "f8e5e0f6b99a042b362d0a7c0eaa5f28", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Affymetrix Human Cancer G110 Array annotation data (chip hcg110)", "source.ver": "src/contrib/hcg110.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate", "RUnit" ], "Package": "hcg110.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Homo_sapiens", "hcg110" ], "Description": "Affymetrix Human Cancer G110 Array annotation data (chip hcg110) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hcg110.db_2.8.0.zip" }, "BSgenome.Ggallus.UCSC.galGal4": { "organism": "Gallus gallus", "Depends": [ "BSgenome (>= 1.25.1)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/BSgenome.Ggallus.UCSC.galGal4_1.3.18.tgz", "Version": "1.3.18", "hasINSTALL": false, "MD5sum": "5713916fe37b799bf8d79f9db16f5cea", "Maintainer": "Bioconductor Package Maintainer ", "Author": "The Bioconductor Dev Team", "Title": "Gallus gallus (Chicken) full genome (UCSC version galGal4)", "source.ver": "src/contrib/BSgenome.Ggallus.UCSC.galGal4_1.3.18.tar.gz", "Imports": [ "BSgenome" ], "NeedsCompilation": "no", "Package": "BSgenome.Ggallus.UCSC.galGal4", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Gallus_gallus", "Genetics" ], "Description": "Gallus gallus (Chicken) full genome as provided by UCSC (galGal4, Nov. 2011) and stored in Biostrings objects.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/BSgenome.Ggallus.UCSC.galGal4_1.3.18.zip" }, "mouse430a2frmavecs": { "Depends": [ "R (>= 2.10.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/mouse430a2frmavecs_0.0.2.tgz", "Version": "0.0.2", "hasINSTALL": false, "MD5sum": "2aaae45576376520985878ea92bec6de", "Maintainer": "Matthew N. McCall ", "Author": "Matthew N. McCall , Rafael A. Irizarry ", "Title": "Vectors used by frma for microarrays of type mouse430a2", "source.ver": "src/contrib/mouse430a2frmavecs_0.0.2.tar.gz", "NeedsCompilation": "no", "Package": "mouse430a2frmavecs", "License": "GPL (>= 2)", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "mouse430a2" ], "Description": "This package was created by frmaTools version 1.9.2.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/mouse430a2frmavecs_0.0.2.zip" }, "hgu95bprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hgu95bprobe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "d146c0655fa90825821f3542b27ef08d", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type hgu95b", "source.ver": "src/contrib/hgu95bprobe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "hgu95bprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "hgu95b", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG-U95B\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hgu95bprobe_2.11.0.zip" }, "lumiRatAll.db": { "organism": "Rattus norvegicus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.18.0)", "org.Rn.eg.db (>= 2.7.1)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/lumiRatAll.db_1.18.0.tgz", "Version": "1.18.0", "hasINSTALL": false, "MD5sum": "ad54c843bbce5cccd89e9fcf2acf64d2", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson, Seth Falcon, Herve Pages, Nianhua Li", "Title": "me Mouse Illumina annotation data (chip lumiRatAll)", "source.ver": "src/contrib/lumiRatAll.db_1.18.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "me", "Suggests": [ "annotate" ], "Package": "lumiRatAll.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Rattus_norvegicus", "lumiRatAll", "meChip" ], "Description": "me Mouse Illumina annotation data (chip lumiRatAll) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/lumiRatAll.db_1.18.0.zip" }, "pd.mg.u74cv2": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.mg.u74cv2_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "957a887dc39e8bd83fc97e2744c87a30", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name MG_U74Cv2", "source.ver": "src/contrib/pd.mg.u74cv2_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.mg.u74cv2", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name MG_U74Cv2", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.mg.u74cv2_1.8.0.zip" }, "mgu74bv2cdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/mgu74bv2cdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "e3838a7c63dac37053f1cfeba839b712", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "mgu74bv2cdf", "source.ver": "src/contrib/mgu74bv2cdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "mgu74bv2cdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "cdf", "mgu74bv2" ], "Description": "A package containing an environment representing the MG_U74Bv2.CDF file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/mgu74bv2cdf_2.11.0.zip" }, "hugene10stprobeset.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.15.34)", "org.Hs.eg.db (>= 2.6.3)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hugene10stprobeset.db_8.0.1.tgz", "Version": "8.0.1", "hasINSTALL": false, "MD5sum": "3dc3efa342b3d0209e87c92ce2266a0f", "Maintainer": "Li, Arthur ", "Author": "Arthur Li", "Title": "Affymetrix Human Gene 1.0-ST Probeset Array Revision 8 annotation data (chip hugene10stprobeset)", "source.ver": "src/contrib/hugene10stprobeset.db_8.0.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate" ], "Package": "hugene10stprobeset.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "hugene10stprobeset" ], "Description": "Affymetrix Human Gene 1.0-ST Probeset Array Revision 8 annotation data (chip hugene10stprobeset) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hugene10stprobeset.db_8.0.1.zip" }, "caninecdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/caninecdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "296b0e1a487a9623d73585f33ee6218e", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "caninecdf", "source.ver": "src/contrib/caninecdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "caninecdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Canis_familiaris", "canine", "cdf" ], "Description": "A package containing an environment representing the Canine.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/caninecdf_2.11.0.zip" }, "hgu95aprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hgu95aprobe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "b863b36d938e275497c34d005de56796", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type hgu95a", "source.ver": "src/contrib/hgu95aprobe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "hgu95aprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "hgu95a", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG\\_U95A\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hgu95aprobe_2.11.0.zip" }, "SNPlocs.Hsapiens.dbSNP.20120608": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.10)", "IRanges", "GenomicRanges", "BSgenome (>= 1.25.6)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/SNPlocs.Hsapiens.dbSNP.20120608_0.99.8.tgz", "Version": "0.99.8", "hasINSTALL": false, "MD5sum": "78116215eb26e590c04f7fd706c8d4d6", "Maintainer": "H. Pages ", "Author": "Herve Pages", "Title": "SNP locations for Homo sapiens (dbSNP Build 137)", "suggestsMe": [ "GGtools" ], "source.ver": "src/contrib/SNPlocs.Hsapiens.dbSNP.20120608_0.99.8.tar.gz", "Imports": [ "methods", "utils", "IRanges", "GenomicRanges", "BSgenome" ], "NeedsCompilation": "no", "Suggests": [ "Biostrings", "BSgenome.Hsapiens.UCSC.hg19 (>= 1.3.19)" ], "Package": "SNPlocs.Hsapiens.dbSNP.20120608", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Genetics", "Homo_sapiens" ], "Description": "SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 137. The source data files used for this package were created by NCBI on June 7-8, 2012, and contain SNPs mapped to reference genome GRCh37.p5. WARNING: Note that the GRCh37.p5 genome is a patched version of GRCh37 but the patch doesn't alter chromosomes 1-22, X, Y, MT. GRCh37 itself is the same as the hg19 genome from UCSC *except* for the mitochondrion chromosome. Therefore, the SNPs in this package can be \"injected\" in BSgenome.Hsapiens.UCSC.hg19 and they will land at the correct location but this injection will exclude chrM (i.e. nothing will be injected in that sequence).", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/SNPlocs.Hsapiens.dbSNP.20120608_0.99.8.zip" }, "rgu34cprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/rgu34cprobe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "2a4f8345d7e545dbd3f95d63d94cd80d", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type rgu34c", "source.ver": "src/contrib/rgu34cprobe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "rgu34cprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Rattus_norvegicus", "probe", "rgu34c" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was RG-U34C\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/rgu34cprobe_2.11.0.zip" }, "pd.mg.u74a": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.mg.u74a_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "ca28c0a77922f3e61c9c401cca732f4c", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name MG_U74A", "source.ver": "src/contrib/pd.mg.u74a_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.mg.u74a", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name MG_U74A", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.mg.u74a_1.8.0.zip" }, "hgu95cprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hgu95cprobe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "d4aea9e0869780a113591408f0e1b30c", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type hgu95c", "source.ver": "src/contrib/hgu95cprobe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "hgu95cprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "hgu95c", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG-U95C\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hgu95cprobe_2.11.0.zip" }, "illuminaMousev1p1.db": { "organism": "Mus musculus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.37)", "org.Mm.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/illuminaMousev1p1.db_1.16.1.tgz", "Version": "1.16.1", "hasINSTALL": false, "MD5sum": "9407bc7295e993c29e56f71eb4dae139", "Maintainer": "Mark Dunning ", "Author": "Mark Dunning, Andy Lynch, Matthew Eldridge", "Title": "Illumina MouseWG6v1p1 annotation data (chip illuminaMousev1p1)", "source.ver": "src/contrib/illuminaMousev1p1.db_1.16.1.tar.gz", "Imports": [ "methods", "AnnotationDbi", "AnnotationForge" ], "NeedsCompilation": "no", "manufacturer": "Illumina", "Suggests": [ "annotate", "RUnit" ], "Package": "illuminaMousev1p1.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "ChipDb", "IlluminaChip", "Mus_musculus", "illuminaMousev1p1" ], "Description": "Illumina MouseWG6v1p1 annotation data (chip illuminaMousev1p1) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/illuminaMousev1p1.db_1.16.1.zip" }, "pd.mg.u74b": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.mg.u74b_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "59a9fe77721990a2ef3b67f8926d19d7", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name MG_U74B", "source.ver": "src/contrib/pd.mg.u74b_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.mg.u74b", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name MG_U74B", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.mg.u74b_1.8.0.zip" }, "pd.equgene.1.0.st": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.equgene.1.0.st_3.8.0.tgz", "Version": "3.8.0", "hasINSTALL": false, "MD5sum": "4cf94218539a645a881424e1fd38c848", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for Affymetrix EquGene-1_0-st", "source.ver": "src/contrib/pd.equgene.1.0.st_3.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.equgene.1.0.st", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for Affymetrix EquGene-1_0-st", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.equgene.1.0.st_3.8.0.zip" }, "lumiMouseIDMapping": { "organism": "Mus musculus", "Depends": [ "R (>= 2.7.0)", "lumi (>= 1.7.14)", "methods", "AnnotationDbi (>= 1.13.13)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/lumiMouseIDMapping_1.10.0.tgz", "Version": "1.10.0", "hasINSTALL": false, "MD5sum": "305aba80ebf6ef4c26899302ea9e50e8", "Maintainer": "Gilbert Feng ", "Author": "Pan Du, Gilbert Feng, Warren Kibbe, Simon Lin", "Title": "Illumina Identifier mapping for Mouse", "source.ver": "src/contrib/lumiMouseIDMapping_1.10.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "Package": "lumiMouseIDMapping", "License": "The Artistic License, Version 2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Mus musculus" ], "Description": "This package includes mappings information between different types of Illumina IDs of Illumina Mouse chips and nuIDs. It also includes mappings of all nuIDs included in Illumina Mouse chips to RefSeq IDs with mapping qualities information.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/lumiMouseIDMapping_1.10.0.zip" }, "maizecdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/maizecdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "de67ab1a4517a18a22e18196303526a2", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "maizecdf", "source.ver": "src/contrib/maizecdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "maizecdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Zea_mays", "cdf", "maize" ], "Description": "A package containing an environment representing the Maize.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/maizecdf_2.11.0.zip" }, "IlluminaHumanMethylation450kmanifest": { "Depends": [ "R (>= 2.13.0)", "minfi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/IlluminaHumanMethylation450kmanifest_0.4.0.tgz", "Version": "0.4.0", "dependsOnMe": [ "minfiData" ], "hasINSTALL": false, "MD5sum": "664d1f5a3892974334faa26757269509", "Maintainer": "Kasper Daniel Hansen ", "Author": "Kasper Daniel Hansen, Martin Aryee", "Title": "Annotation for Illumina's 450k methylation arrays", "suggestsMe": [ "minfi" ], "source.ver": "src/contrib/IlluminaHumanMethylation450kmanifest_0.4.0.tar.gz", "NeedsCompilation": "no", "Package": "IlluminaHumanMethylation450kmanifest", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "DNAMethylation", "Homo_sapiens", "IlluminaChip" ], "Description": "Manifest for Illumina's 450k array data", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/IlluminaHumanMethylation450kmanifest_0.4.0.zip" }, "hu6800subbcdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hu6800subbcdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "e9eb7ad74fbefddb662e8b6d503276da", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "hu6800subbcdf", "source.ver": "src/contrib/hu6800subbcdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "hu6800subbcdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "hu6800subb" ], "Description": "A package containing an environment representing the Hu6800subB.CDF file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hu6800subbcdf_2.11.0.zip" }, "pd.mg.u74c": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.mg.u74c_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "c6497b98951303fd012baa787fd54ae5", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name MG_U74C", "source.ver": "src/contrib/pd.mg.u74c_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.mg.u74c", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name MG_U74C", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.mg.u74c_1.8.0.zip" }, "pd.felgene.1.1.st": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.felgene.1.1.st_3.8.0.tgz", "Version": "3.8.0", "hasINSTALL": false, "MD5sum": "64791d798ccef8422e888df1edba48f9", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for Affymetrix FelGene-1_1-st", "source.ver": "src/contrib/pd.felgene.1.1.st_3.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.felgene.1.1.st", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for Affymetrix FelGene-1_1-st", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.felgene.1.1.st_3.8.0.zip" }, "mgu74cv2cdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/mgu74cv2cdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "558032068ba3fff80db767cbeb72404f", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "mgu74cv2cdf", "source.ver": "src/contrib/mgu74cv2cdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "mgu74cv2cdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "cdf", "mgu74cv2" ], "Description": "A package containing an environment representing the MG_U74Cv2.CDF file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/mgu74cv2cdf_2.11.0.zip" }, "MoExExonProbesetLocation": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.15.29)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/MoExExonProbesetLocation_1.0.4.tgz", "Version": "1.0.4", "hasINSTALL": false, "MD5sum": "a17b3067b71c31629e8430e4ddd44924", "Maintainer": "Raffaele A. Calogero ", "Author": "Raffaele A. Calogero", "Title": "Exon-level probeset chromosome location for microarrays of type MoEx", "suggestsMe": [ "oneChannelGUI" ], "source.ver": "src/contrib/MoExExonProbesetLocation_1.0.4.tar.gz", "NeedsCompilation": "no", "Package": "MoExExonProbesetLocation", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "MoEx", "Mus musculus" ], "Description": "This package was automatically created by package AnnotationDbi version 1.15.29. The exon-level probeset genome location was retrieved from Netaffx using AffyCompatible. The exon-level probeset genome location was retrieved from Netaffx using AffyCompatible.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/MoExExonProbesetLocation_1.0.4.zip" }, "hgug4112a.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)", "org.Hs.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hgug4112a.db_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "8ccb09c521cc3786ce0ace2b981a8e41", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Agilent \"Human Genome, Whole\" annotation data (chip hgug4112a)", "suggestsMe": [ "Agi4x44PreProcess", "RmiR.Hs.miRNA", "RmiR.hsa" ], "source.ver": "src/contrib/hgug4112a.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Agilent", "Suggests": [ "annotate", "RUnit" ], "Package": "hgug4112a.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AgilentChip", "AnnotationData", "ChipDb", "Homo_sapiens", "hgug4112a" ], "Description": "Agilent \"Human Genome, Whole\" annotation data (chip hgug4112a) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hgug4112a.db_2.8.0.zip" }, "pd.rcngene.1.1.st": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.rcngene.1.1.st_3.8.0.tgz", "Version": "3.8.0", "hasINSTALL": false, "MD5sum": "8dc2591ade8bcbe23bfaaae7edd6d430", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for Affymetrix RCnGene-1_1-st", "source.ver": "src/contrib/pd.rcngene.1.1.st_3.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.rcngene.1.1.st", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for Affymetrix RCnGene-1_1-st", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.rcngene.1.1.st_3.8.0.zip" }, "org.Xl.eg.db": { "organism": "Xenopus laevis", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/org.Xl.eg.db_2.8.0.tgz", "Version": "2.8.0", "dependsOnMe": [ "xlaevis.db" ], "hasINSTALL": false, "MD5sum": "77d5859f301b7090983291ee4077913f", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Genome wide annotation for Xenopus", "source.ver": "src/contrib/org.Xl.eg.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "Suggests": [ "annotate", "RUnit" ], "Package": "org.Xl.eg.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "OrgDb", "Xenopus_laevis" ], "Description": "Genome wide annotation for Xenopus, primarily based on mapping using Entrez Gene identifiers.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/org.Xl.eg.db_2.8.0.zip" }, "mu11ksubacdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/mu11ksubacdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "697efb364f0d4b0f27b0e172351bebe7", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "mu11ksubacdf", "source.ver": "src/contrib/mu11ksubacdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "mu11ksubacdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "cdf", "mu11ksuba" ], "Description": "A package containing an environment representing the Mu11KsubA.CDF file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/mu11ksubacdf_2.11.0.zip" }, "gahgu95d.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.5.24)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/gahgu95d.db_2.2.0.tgz", "Version": "2.2.0", "hasINSTALL": false, "MD5sum": "254574d0fb2979ddf002231e7ae53677", "Maintainer": "Francesco Ferrari ", "Author": "Francesco Ferrari, Stefania Bortoluzzi, Alessandro Coppe, Alexandra Sirota, Marilyn Safran, Michael Shmoish, Sergio Ferrari, Doron Lancet, Gian Antonio Danieli and Silvio Bicciato", "Title": "Genecards derived annotations for gahgu95d custom probeset definitions", "source.ver": "src/contrib/gahgu95d.db_2.2.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Package": "gahgu95d.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "GeneCardsCustomSchema" ], "Description": "Genecards derived annotations for gahgu95d custom probeset definitions assembled using data from the GeneCards database (www.genecards.org)", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/gahgu95d.db_2.2.0.zip" }, "ecoliSakai.db0": { "organism": "Escherichia coli", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.1.28)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/ecoliSakai.db0_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "ddca9021f3ab94d0849e090ee1b942f1", "Maintainer": "Biocore Team c/o BioC user list ", "Author": "Marc Carlson, Herve Pages", "Title": "Base Level Annotation databases for E coli Sakai Strain", "source.ver": "src/contrib/ecoliSakai.db0_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "Package": "ecoliSakai.db0", "License": "The Artistic License, Version 2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Escherichia_coli", "db0" ], "Description": "Base annotation databases for E coli Sakai Strain, intended ONLY to be used by AnnotationDbi to produce regular annotation packages.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/ecoliSakai.db0_2.8.0.zip" }, "mgu74av2probe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/mgu74av2probe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "d25fc378dcae041d2515e71d072080b1", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type mgu74av2", "source.ver": "src/contrib/mgu74av2probe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "mgu74av2probe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "mgu74av2", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was MG-U74Av2\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/mgu74av2probe_2.11.0.zip" }, "gahgu95ecdf": { "Depends": [ "utils" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/gahgu95ecdf_2.2.0.tgz", "Version": "2.2.0", "hasINSTALL": false, "MD5sum": "834776bd4a3fbb7e4722a28c316ab314", "Maintainer": "Francesco Ferrari ", "Author": "Francesco Ferrari, Stefania Bortoluzzi, Alessandro Coppe, Alexandra Sirota, Marilyn Safran, Michael Shmoish, Sergio Ferrari, Doron Lancet, Gian Antonio Danieli and Silvio Bicciato", "Title": "gahgu95ecdf", "source.ver": "src/contrib/gahgu95ecdf_2.2.0.tar.gz", "NeedsCompilation": "no", "Package": "gahgu95ecdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "GACustomCDF", "Homo Sapiens", "gahgu95e" ], "Description": "A package containing an environment representing the gahgu95e.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/gahgu95ecdf_2.2.0.zip" }, "xlaevis2cdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/xlaevis2cdf_2.11.1.tgz", "Version": "2.11.1", "hasINSTALL": false, "MD5sum": "6d2a6bd7e189cb8050341b406315aac1", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "xlaevis2cdf", "source.ver": "src/contrib/xlaevis2cdf_2.11.1.tar.gz", "NeedsCompilation": "no", "Package": "xlaevis2cdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Xenopis_laevis", "cdf", "xlaevis2" ], "Description": "A package containing an environment representing the X_laevis_2.CDF file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/xlaevis2cdf_2.11.1.zip" }, "pd.hu6800": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.hu6800_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "0364234b0b18905741c0132b01acb567", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name Hu6800", "source.ver": "src/contrib/pd.hu6800_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.hu6800", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name Hu6800", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.hu6800_1.8.0.zip" }, "pd.felgene.1.0.st": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.felgene.1.0.st_3.8.0.tgz", "Version": "3.8.0", "hasINSTALL": false, "MD5sum": "435c65efae3f55ad552c558b2a4b9719", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for Affymetrix FelGene-1_0-st", "source.ver": "src/contrib/pd.felgene.1.0.st_3.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.felgene.1.0.st", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for Affymetrix FelGene-1_0-st", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.felgene.1.0.st_3.8.0.zip" }, "drosophila2probe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/drosophila2probe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "28d973f27c58071b836ee9eab6fa2b29", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type drosophila2", "suggestsMe": [ "Biostrings" ], "source.ver": "src/contrib/drosophila2probe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "drosophila2probe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Drosophila_melanogaster", "drosophila2", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Drosophila\\_2\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/drosophila2probe_2.11.0.zip" }, "ecoli2probe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/ecoli2probe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "a1bc83664d680ca0a675f0858862587b", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type ecoli2", "source.ver": "src/contrib/ecoli2probe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "ecoli2probe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Escherichia_coli", "ecoli2", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was E\\_coli\\_2\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/ecoli2probe_2.11.0.zip" }, "pd.cangene.1.1.st": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.cangene.1.1.st_3.8.0.tgz", "Version": "3.8.0", "hasINSTALL": false, "MD5sum": "1baa1e2047bee7fdd5a196b5a95237dd", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for Affymetrix CanGene-1_1-st", "source.ver": "src/contrib/pd.cangene.1.1.st_3.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.cangene.1.1.st", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for Affymetrix CanGene-1_1-st", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.cangene.1.1.st_3.8.0.zip" }, "chimp.db0": { "organism": "Pan troglodytes", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.7.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/chimp.db0_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "bdf5ea45746b5ada44198c629c31fccf", "Maintainer": "Biocore Team c/o BioC user list ", "Author": "Marc Carlson, Herve Pages", "Title": "Base Level Annotation databases for chimp", "source.ver": "src/contrib/chimp.db0_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "Package": "chimp.db0", "License": "The Artistic License, Version 2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Pan_troglodytes", "db0" ], "Description": "Base annotation databases for chimp, intended ONLY to be used by AnnotationDbi to produce regular annotation packages.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/chimp.db0_2.8.0.zip" }, "ecoli2cdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/ecoli2cdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "7a73d5586dfffd3ae6241d3dcc26cfec", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "ecoli2cdf", "source.ver": "src/contrib/ecoli2cdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "ecoli2cdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Escherichia_coli", "cdf", "ecoli2" ], "Description": "A package containing an environment representing the E_coli_2.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/ecoli2cdf_2.11.0.zip" }, "hgu95dprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hgu95dprobe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "572dbed4b30249d3a0c5ddfe71a5d490", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type hgu95d", "source.ver": "src/contrib/hgu95dprobe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "hgu95dprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "hgu95d", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG-U95D\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hgu95dprobe_2.11.0.zip" }, "human610quadv1bCrlmm": { "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/human610quadv1bCrlmm_1.0.3.tgz", "Version": "1.0.3", "hasINSTALL": false, "MD5sum": "609cf09410774e084ee6a3286652bb1a", "Maintainer": "Matthew Ritchie ", "Author": "Rafael A Irizarry", "Title": "Metadata for fast genotyping with the 'crlmm' package", "suggestsMe": [ "MinimumDistance" ], "source.ver": "src/contrib/human610quadv1bCrlmm_1.0.3.tar.gz", "Imports": [ "utils" ], "NeedsCompilation": "no", "Package": "human610quadv1bCrlmm", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Package with metadata for genotyping Illumina 610kQuad arrays using the 'crlmm' package.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/human610quadv1bCrlmm_1.0.3.zip" }, "hgu219cdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hgu219cdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "cff6da0d6303e09f474a8793bc2fecf4", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "hgu219cdf", "source.ver": "src/contrib/hgu219cdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "hgu219cdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "hgu219" ], "Description": "A package containing an environment representing the HG-U219.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hgu219cdf_2.11.0.zip" }, "hgu95d.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)", "org.Hs.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hgu95d.db_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "8d4f6bcda6b0fda6431bbff1b12ea88f", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Affymetrix Human Genome U95 Set annotation data (chip hgu95d)", "source.ver": "src/contrib/hgu95d.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate", "RUnit" ], "Package": "hgu95d.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Homo_sapiens", "hgu95d" ], "Description": "Affymetrix Human Genome U95 Set annotation data (chip hgu95d) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hgu95d.db_2.8.0.zip" }, "gahgu95av2.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.5.24)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/gahgu95av2.db_2.2.0.tgz", "Version": "2.2.0", "hasINSTALL": false, "MD5sum": "64d4103fa273fb2b83550c80c0fe5257", "Maintainer": "Francesco Ferrari ", "Author": "Francesco Ferrari, Stefania Bortoluzzi, Alessandro Coppe, Alexandra Sirota, Marilyn Safran, Michael Shmoish, Sergio Ferrari, Doron Lancet, Gian Antonio Danieli and Silvio Bicciato", "Title": "Genecards derived annotations for gahgu95av2 custom probeset definitions", "source.ver": "src/contrib/gahgu95av2.db_2.2.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Package": "gahgu95av2.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "GeneCardsCustomSchema" ], "Description": "Genecards derived annotations for gahgu95av2 custom probeset definitions assembled using data from the GeneCards database (www.genecards.org)", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/gahgu95av2.db_2.2.0.zip" }, "gahgu133bcdf": { "Depends": [ "utils" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/gahgu133bcdf_2.2.0.tgz", "Version": "2.2.0", "hasINSTALL": false, "MD5sum": "3991691a6c086fdc0154c35ec0478135", "Maintainer": "Francesco Ferrari ", "Author": "Francesco Ferrari, Stefania Bortoluzzi, Alessandro Coppe, Alexandra Sirota, Marilyn Safran, Michael Shmoish, Sergio Ferrari, Doron Lancet, Gian Antonio Danieli and Silvio Bicciato", "Title": "gahgu133bcdf", "source.ver": "src/contrib/gahgu133bcdf_2.2.0.tar.gz", "NeedsCompilation": "no", "Package": "gahgu133bcdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "GACustomCDF", "Homo Sapiens", "gahgu133b" ], "Description": "A package containing an environment representing the gahgu133b.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/gahgu133bcdf_2.2.0.zip" }, "humanomni25quadv1bCrlmm": { "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/humanomni25quadv1bCrlmm_1.0.2.tgz", "Version": "1.0.2", "hasINSTALL": false, "MD5sum": "87b0a8f24850df7803a4218e95085eb6", "Maintainer": "Matthew Ritchie ", "Author": "Rafael A Irizarry", "Title": "Metadata for fast genotyping with the 'crlmm' package", "source.ver": "src/contrib/humanomni25quadv1bCrlmm_1.0.2.tar.gz", "Imports": [ "utils" ], "NeedsCompilation": "no", "Package": "humanomni25quadv1bCrlmm", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Package with metadata for genotyping Illumina Omni2.5 Quad arrays using the 'crlmm' package.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/humanomni25quadv1bCrlmm_1.0.2.zip" }, "lumiHumanAll.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.18.0)", "org.Hs.eg.db (>= 2.7.1)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/lumiHumanAll.db_1.18.0.tgz", "Version": "1.18.0", "hasINSTALL": false, "MD5sum": "0f69d58e731a6e9da7ae304ccaa4f55d", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson, Seth Falcon, Herve Pages, Nianhua Li", "Title": "me Human Illumina annotation data (chip lumiHumanAll)", "suggestsMe": [ "lumi" ], "source.ver": "src/contrib/lumiHumanAll.db_1.18.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "me", "Suggests": [ "annotate" ], "Package": "lumiHumanAll.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Homo_sapiens", "lumiHumanAll", "meChip" ], "Description": "me Human Illumina annotation data (chip lumiHumanAll) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/lumiHumanAll.db_1.18.0.zip" }, "hgu95ecdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hgu95ecdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "9cded9dd5d74a374d4ea81c8b6db9870", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "hgu95ecdf", "source.ver": "src/contrib/hgu95ecdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "hgu95ecdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "hgu95e" ], "Description": "A package containing an environment representing the HG_U95E.CDF file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hgu95ecdf_2.11.0.zip" }, "mouse430a2cdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/mouse430a2cdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "0a3d736704ea3a9f6768a77a5213bf88", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "mouse430a2cdf", "source.ver": "src/contrib/mouse430a2cdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "mouse430a2cdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "cdf", "mouse430a2" ], "Description": "A package containing an environment representing the Mouse430A_2.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/mouse430a2cdf_2.11.0.zip" }, "gahgu133acdf": { "Depends": [ "utils" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/gahgu133acdf_2.2.0.tgz", "Version": "2.2.0", "hasINSTALL": false, "MD5sum": "67f5a94f71384dd492640e7827a7a40e", "Maintainer": "Francesco Ferrari ", "Author": "Francesco Ferrari, Stefania Bortoluzzi, Alessandro Coppe, Alexandra Sirota, Marilyn Safran, Michael Shmoish, Sergio Ferrari, Doron Lancet, Gian Antonio Danieli and Silvio Bicciato", "Title": "gahgu133acdf", "source.ver": "src/contrib/gahgu133acdf_2.2.0.tar.gz", "NeedsCompilation": "no", "Package": "gahgu133acdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "GACustomCDF", "Homo Sapiens", "gahgu133a" ], "Description": "A package containing an environment representing the gahgu133a.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/gahgu133acdf_2.2.0.zip" }, "POCRCannotation.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)", "org.Hs.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/POCRCannotation.db_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "35da1974246ea848a0f80b2a077bd9f7", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "A package containing metadata for POCRC arrays", "source.ver": "src/contrib/POCRCannotation.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "CUSTOM", "Suggests": [ "annotate", "RUnit" ], "Package": "POCRCannotation.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "CUSTOMChip", "ChipDb", "Homo_sapiens", "POCRCannotation" ], "Description": "A package containing metadata for POCRC arrays assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/POCRCannotation.db_2.8.0.zip" }, "pd.rice": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.rice_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "cc5de9dfa30291592b886b2ee2439ad5", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name Rice", "source.ver": "src/contrib/pd.rice_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.rice", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name Rice", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.rice_1.8.0.zip" }, "pd.ht.mg.430a": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.ht.mg.430a_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "0040fd20c00750e7535496a6927d7a9e", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name HT_MG-430A", "source.ver": "src/contrib/pd.ht.mg.430a_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.ht.mg.430a", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name HT_MG-430A", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.ht.mg.430a_1.8.0.zip" }, "bsubtilisprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/bsubtilisprobe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "87674e7400c40c43977c9ce3f4640528", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type bsubtilis", "source.ver": "src/contrib/bsubtilisprobe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "bsubtilisprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Bacillus_subtilis", "bsubtilis", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Bsubtilis\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/bsubtilisprobe_2.11.0.zip" }, "IlluminaHumanMethylation27k.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.11.9)", "org.Hs.eg.db (>= 2.4.5)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/IlluminaHumanMethylation27k.db_1.4.7.tgz", "Version": "1.4.7", "hasINSTALL": false, "MD5sum": "1fb862875c3ce9745de95824e6b2d714", "Maintainer": "Tim Triche, Jr. ", "Author": "Sean Davis ", "Title": "Illumina Illumina Human Methylation 27k annotation data (chip IlluminaHumanMethylation27k)", "suggestsMe": [ "methylumi" ], "source.ver": "src/contrib/IlluminaHumanMethylation27k.db_1.4.7.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Illumina", "Suggests": [ "annotate" ], "Package": "IlluminaHumanMethylation27k.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "DNAMethylation", "Homo_sapiens", "IlluminaChip" ], "Description": "Illumina Illumina Human Methylation 27k annotation data (chip IlluminaHumanMethylation27k) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/IlluminaHumanMethylation27k.db_1.4.7.zip" }, "huex.1.0.st.v2frmavecs": { "Depends": [ "R (>= 2.10.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/huex.1.0.st.v2frmavecs_0.0.3.tgz", "Version": "0.0.3", "hasINSTALL": false, "MD5sum": "91e981c4a8190114530af3ec558ceff4", "Maintainer": "Matthew N. McCall ", "Author": "Matthew N. McCall , Sameer Chavan , Rafael A. Irizarry ", "Title": "Vectors used by frma for microarrays of type huex.1.0.st.v2", "source.ver": "src/contrib/huex.1.0.st.v2frmavecs_0.0.3.tar.gz", "NeedsCompilation": "no", "Package": "huex.1.0.st.v2frmavecs", "License": "GPL (>= 2)", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "huex.1.0.st.v2" ], "Description": "This package was created by frmaTools version 1.9.2.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/huex.1.0.st.v2frmavecs_0.0.3.zip" }, "hgu95av2": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.4.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hgu95av2_2.2.0.tgz", "Version": "2.2.0", "hasINSTALL": false, "MD5sum": "b92585c0f43e91bd1abd234b9465a6a7", "Maintainer": "Biocore Data Team ", "Author": "Ting-Yuan Liu, ChenWei Lin, Seth Falcon, Jianhua Zhang, James W. MacDonald", "Title": "Affymetrix Human Genome U95 Set Annotation Data (hgu95av2)", "suggestsMe": [ "AffyExpress", "tkWidgets" ], "source.ver": "src/contrib/hgu95av2_2.2.0.tar.gz", "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Package": "hgu95av2", "License": "The Artistic License, Version 2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "hgu95av2" ], "Description": "Affymetrix Human Genome U95 Set annotation data (hgu95av2) assembled using data from public data repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hgu95av2_2.2.0.zip" }, "DO.db": { "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.9.7)" ], "vignetteTitles": [ "DO.db Overview" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/DO.db_2.5.0.tgz", "Version": "2.5.0", "hasINSTALL": false, "MD5sum": "fd0dba665002bd9c0afff699d48fd6b2", "Maintainer": "Jiang Li ", "Author": "Jiang Li", "Title": "A set of annotation maps describing the entire Disease Ontology", "source.ver": "src/contrib/DO.db_2.5.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "Package": "DO.db", "vignettes": [ "vignettes/DO.db/inst/doc/DO.db.pdf" ], "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "FunctionalAnnotation" ], "Description": "A set of annotation maps describing the entire Disease Ontology assembled using data from DO", "hasLICENSE": false, "importsMe": [ "DOSE" ], "win.binary.ver": "bin/windows/contrib/2.16/DO.db_2.5.0.zip" }, "htratfocuscdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/htratfocuscdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "1e6e97233804610c56e39143fcfbb583", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "htratfocuscdf", "source.ver": "src/contrib/htratfocuscdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "htratfocuscdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Rattus_norvegicus", "cdf", "htratfocus" ], "Description": "A package containing an environment representing the HT_Rat-Focus.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/htratfocuscdf_2.11.0.zip" }, "drosophila2.db": { "organism": "Drosophila melanogaster", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.20.2)", "org.Dm.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/drosophila2.db_2.8.1.tgz", "Version": "2.8.1", "hasINSTALL": false, "MD5sum": "568bc50ebd20553959673903d83ce736", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Affymetrix Drosophila Genome 2.0 Array annotation data (chip drosophila2)", "source.ver": "src/contrib/drosophila2.db_2.8.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate", "RUnit" ], "Package": "drosophila2.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Drosophila_melanogaster", "drosophila2" ], "Description": "Affymetrix Drosophila Genome 2.0 Array annotation data (chip drosophila2) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/drosophila2.db_2.8.1.zip" }, "ygs98cdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/ygs98cdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "bdcf77cb5dfd59b2ffc406ec4fa28093", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "ygs98cdf", "source.ver": "src/contrib/ygs98cdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "ygs98cdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Saccharomyces_cerevisiae", "cdf", "ygs98" ], "Description": "A package containing an environment representing the YG_S98.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/ygs98cdf_2.11.0.zip" }, "ragene11stprobeset.db": { "organism": "Rattus norvegicus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.15.34)", "org.Rn.eg.db (>= 2.6.3)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/ragene11stprobeset.db_4.0.1.tgz", "Version": "4.0.1", "hasINSTALL": false, "MD5sum": "7086e31a4a620853be018a12c6f9f6cf", "Maintainer": "Li, Arthur ", "Author": "Arthur Li", "Title": "Affymetrix Rat Gene 1.1-ST Array Probeset Revision 4 annotation data (chip ragene11stprobeset)", "source.ver": "src/contrib/ragene11stprobeset.db_4.0.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate" ], "Package": "ragene11stprobeset.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Rattus_norvegicus", "ragene11stprobeset" ], "Description": "Affymetrix Rat Gene 1.1-ST Array Probeset Revision 4 annotation data (chip ragene11stprobeset) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/ragene11stprobeset.db_4.0.1.zip" }, "mgu74bcdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/mgu74bcdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "488553a39116d746a986afcd1d01b764", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "mgu74bcdf", "source.ver": "src/contrib/mgu74bcdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "mgu74bcdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "cdf", "mgu74b" ], "Description": "A package containing an environment representing the MG_U74B.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/mgu74bcdf_2.11.0.zip" }, "humancytosnp12v2p1hCrlmm": { "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/humancytosnp12v2p1hCrlmm_1.0.1.tgz", "Version": "1.0.1", "hasINSTALL": false, "MD5sum": "edf80245ddb28afb9fbaa6668187bf3a", "Maintainer": "Matthew Ritchie ", "Author": "Rafael A Irizarry", "Title": "Metadata for fast genotyping with the 'crlmm' package", "source.ver": "src/contrib/humancytosnp12v2p1hCrlmm_1.0.1.tar.gz", "Imports": [ "utils" ], "NeedsCompilation": "no", "Package": "humancytosnp12v2p1hCrlmm", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Package with metadata for genotyping Illumina CytoSNP 12 arrays using the 'crlmm' package.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/humancytosnp12v2p1hCrlmm_1.0.1.zip" }, "indac.db": { "organism": "Drosophila melanogaster", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.20.2)", "org.Dm.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/indac.db_2.8.1.tgz", "Version": "2.8.1", "hasINSTALL": false, "MD5sum": "3f967a11916167f66683737140955c78", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "INDAC FlyChip_long_oligonucleotide_002 (FL002) annotation data (chip indac)", "source.ver": "src/contrib/indac.db_2.8.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "INDAC", "Suggests": [ "annotate", "RUnit" ], "Package": "indac.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "ChipDb", "Drosophila_melanogaster", "INDACChip", "indac" ], "Description": "INDAC FlyChip_long_oligonucleotide_002 (FL002) annotation data (chip indac) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/indac.db_2.8.1.zip" }, "ye6100subacdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/ye6100subacdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "bac1cad65fa170751a75d7c158889464", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "ye6100subacdf", "source.ver": "src/contrib/ye6100subacdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "ye6100subacdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Saccharomyces_cerevisiae", "cdf", "ye6100suba" ], "Description": "A package containing an environment representing the Ye6100subA.CDF file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/ye6100subacdf_2.11.0.zip" }, "rnu34.db": { "organism": "Rattus norvegicus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.20.2)", "org.Rn.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/rnu34.db_2.8.1.tgz", "Version": "2.8.1", "hasINSTALL": false, "MD5sum": "8b934426ec8264ed1ec8fb2b8551d91a", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Affymetrix Rat Neurobiology U34 Array annotation data (chip rnu34)", "source.ver": "src/contrib/rnu34.db_2.8.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate", "RUnit" ], "Package": "rnu34.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Rattus_norvegicus", "rnu34" ], "Description": "Affymetrix Rat Neurobiology U34 Array annotation data (chip rnu34) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/rnu34.db_2.8.1.zip" }, "pd.rhegene.1.1.st": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.rhegene.1.1.st_3.8.0.tgz", "Version": "3.8.0", "hasINSTALL": false, "MD5sum": "88893a64c0cbbfd35995601dcc13a688", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for Affymetrix RheGene-1_1-st", "source.ver": "src/contrib/pd.rhegene.1.1.st_3.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.rhegene.1.1.st", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for Affymetrix RheGene-1_1-st", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.rhegene.1.1.st_3.8.0.zip" }, "mogene10sttranscriptcluster.db": { "organism": "Mus musculus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.15.34)", "org.Mm.eg.db (>= 2.6.3)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/mogene10sttranscriptcluster.db_8.0.1.tgz", "Version": "8.0.1", "hasINSTALL": false, "MD5sum": "f5b714d1ec9042d00f3520922efecacd", "Maintainer": "Li, Arthur ", "Author": "Arthur Li", "Title": "Affymetrix Mouse Gene 1.0-ST Array Transcriptcluster Revision 8 annotation data (chip mogene10sttranscriptcluster)", "suggestsMe": [ "oneChannelGUI", "pcaGoPromoter" ], "source.ver": "src/contrib/mogene10sttranscriptcluster.db_8.0.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate" ], "Package": "mogene10sttranscriptcluster.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "mogene10sttranscriptcluster" ], "Description": "Affymetrix Mouse Gene 1.0-ST Array Transcriptcluster Revision 8 annotation data (chip mogene10sttranscriptcluster) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/mogene10sttranscriptcluster.db_8.0.1.zip" }, "mouse4302.db": { "organism": "Mus musculus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.20.2)", "org.Mm.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/mouse4302.db_2.8.1.tgz", "Version": "2.8.1", "hasINSTALL": false, "MD5sum": "83ce898cbdcb3d43f3b66f6c9ea0ee3d", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Affymetrix Mouse Genome 430 2.0 Array annotation data (chip mouse4302)", "suggestsMe": [ "ChIPXpress", "MLP", "pcaGoPromoter" ], "source.ver": "src/contrib/mouse4302.db_2.8.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate", "RUnit" ], "Package": "mouse4302.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Mus_musculus", "mouse4302" ], "Description": "Affymetrix Mouse Genome 430 2.0 Array annotation data (chip mouse4302) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/mouse4302.db_2.8.1.zip" }, "chickencdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/chickencdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "ad43580e35a66bc6bc0cdec55e06ec2a", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "chickencdf", "source.ver": "src/contrib/chickencdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "chickencdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Gallus_gallus", "cdf", "chicken" ], "Description": "A package containing an environment representing the Chicken.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/chickencdf_2.11.0.zip" }, "rtu34.db": { "organism": "Rattus norvegicus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.20.2)", "org.Rn.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/rtu34.db_2.8.1.tgz", "Version": "2.8.1", "hasINSTALL": false, "MD5sum": "4d5e52b84c085555212f59a28751f8fb", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Affymetrix Rat Toxicology U34 Array annotation data (chip rtu34)", "source.ver": "src/contrib/rtu34.db_2.8.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate", "RUnit" ], "Package": "rtu34.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Rattus_norvegicus", "rtu34" ], "Description": "Affymetrix Rat Toxicology U34 Array annotation data (chip rtu34) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/rtu34.db_2.8.1.zip" }, "mguatlas5k.db": { "organism": "Mus musculus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.20.2)", "org.Mm.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/mguatlas5k.db_2.8.1.tgz", "Version": "2.8.1", "hasINSTALL": false, "MD5sum": "653eccbdc3a659777e45a63917aa8968", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Clontech BD Atlas Long Oligos Mouse 5K annotation data (chip mguatlas5k)", "source.ver": "src/contrib/mguatlas5k.db_2.8.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Clontech", "Suggests": [ "annotate", "RUnit" ], "Package": "mguatlas5k.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "ChipDb", "ClontechChip", "Mus_musculus", "mguatlas5k" ], "Description": "Clontech BD Atlas Long Oligos Mouse 5K annotation data (chip mguatlas5k) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/mguatlas5k.db_2.8.1.zip" }, "lumiMouseAll.db": { "organism": "Mus musculus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.18.0)", "org.Mm.eg.db (>= 2.7.1)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/lumiMouseAll.db_1.18.0.tgz", "Version": "1.18.0", "hasINSTALL": false, "MD5sum": "fa7738650dcd353267ed96e7f4aaff43", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson, Seth Falcon, Herve Pages, Nianhua Li", "Title": "me Mouse Illumina annotation data (chip lumiMouseAll)", "source.ver": "src/contrib/lumiMouseAll.db_1.18.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "me", "Suggests": [ "annotate" ], "Package": "lumiMouseAll.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Mus_musculus", "lumiMouseAll", "meChip" ], "Description": "me Mouse Illumina annotation data (chip lumiMouseAll) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/lumiMouseAll.db_1.18.0.zip" }, "xlaevis.db": { "organism": "Xenopus laevis", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.20.2)", "org.Xl.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/xlaevis.db_2.8.1.tgz", "Version": "2.8.1", "hasINSTALL": false, "MD5sum": "542a4d28e42923dcf4150a0c6b9508fe", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Affymetrix Xenopus laevis annotation data (chip xlaevis)", "source.ver": "src/contrib/xlaevis.db_2.8.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate", "RUnit" ], "Package": "xlaevis.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Xenopus_laevis", "xlaevis" ], "Description": "Affymetrix Xenopus laevis annotation data (chip xlaevis) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/xlaevis.db_2.8.1.zip" }, "vitisviniferaprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/vitisviniferaprobe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "52f248b0e9d698923ed4438df4f9b03f", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type vitisvinifera", "source.ver": "src/contrib/vitisviniferaprobe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "vitisviniferaprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Vitis_vinifera", "probe", "vitisvinifera" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Vitis\\_Vinifera\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/vitisviniferaprobe_2.11.0.zip" }, "TxDb.Celegans.UCSC.ce6.ensGene": { "organism": "Caenorhabditis elegans", "Depends": [ "GenomicFeatures (>= 1.9.39)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/TxDb.Celegans.UCSC.ce6.ensGene_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "38fcbfd0692e88c07a5864ba6ab52b14", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Annotation package for TranscriptDb object(s)", "source.ver": "src/contrib/TxDb.Celegans.UCSC.ce6.ensGene_2.8.0.tar.gz", "Imports": [ "GenomicFeatures", "AnnotationDbi" ], "NeedsCompilation": "no", "Package": "TxDb.Celegans.UCSC.ce6.ensGene", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Caenorhabditis_elegans", "Genetics", "TranscriptDb" ], "Description": "Exposes an annotation databases generated from UCSC by exposing these as TranscriptDb objects", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/TxDb.Celegans.UCSC.ce6.ensGene_2.8.0.zip" }, "pd.hg.u133a.tag": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.hg.u133a.tag_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "f45c6af4567205f850547e14d6855d72", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name HG-U133A_tag", "source.ver": "src/contrib/pd.hg.u133a.tag_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.hg.u133a.tag", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name HG-U133A_tag", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.hg.u133a.tag_1.8.0.zip" }, "illuminaHumanv2.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.37)", "org.Hs.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/illuminaHumanv2.db_1.16.0.tgz", "Version": "1.16.0", "hasINSTALL": false, "MD5sum": "6948c3f180da84159ffdf89d0acf15e5", "Maintainer": "Mark Dunning ", "Author": "Mark Dunning, Andy Lynch, Matthew Eldridge", "Title": "Illumina HumanWG6v2 annotation data (chip illuminaHumanv2)", "suggestsMe": [ "BeadArrayUseCases" ], "source.ver": "src/contrib/illuminaHumanv2.db_1.16.0.tar.gz", "Imports": [ "methods", "AnnotationDbi", "AnnotationForge" ], "NeedsCompilation": "no", "manufacturer": "Illumina", "Suggests": [ "annotate", "RUnit" ], "Package": "illuminaHumanv2.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "ChipDb", "Homo_sapiens", "IlluminaChip", "illuminaHumanv2" ], "Description": "Illumina HumanWG6v2 annotation data (chip illuminaHumanv2) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/illuminaHumanv2.db_1.16.0.zip" }, "hgfocus.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)", "org.Hs.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hgfocus.db_2.8.0.tgz", "Version": "2.8.0", "dependsOnMe": [ "cheung2010" ], "hasINSTALL": false, "MD5sum": "ea2ad96920b51850d29428a725291e51", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Affymetrix Human Genome Focus Array annotation data (chip hgfocus)", "source.ver": "src/contrib/hgfocus.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate", "RUnit" ], "Package": "hgfocus.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Homo_sapiens", "hgfocus" ], "Description": "Affymetrix Human Genome Focus Array annotation data (chip hgfocus) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hgfocus.db_2.8.0.zip" }, "mm24kresogen.db": { "organism": "Mus musculus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.13.19)", "org.Mm.eg.db (>= 2.5.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/mm24kresogen.db_2.5.0.tgz", "Version": "2.5.0", "hasINSTALL": false, "MD5sum": "437f5d4bc225ee500af1ecc2d4da472b", "Maintainer": "Simon de Bernard ", "Author": "AltraBio", "Title": "RNG_MRC Mouse Pangenomic 24k Set annotation data (chip mm24kresogen)", "source.ver": "src/contrib/mm24kresogen.db_2.5.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "RNG_MRC", "Suggests": [ "annotate" ], "Package": "mm24kresogen.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Mus_musculus", "RNG_MRCChip", "mm24kresogen" ], "Description": "RNG_MRC Mouse Pangenomic 24k Set annotation data (chip mm24kresogen) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/mm24kresogen.db_2.5.0.zip" }, "drosgenome1.db": { "organism": "Drosophila melanogaster", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.20.2)", "org.Dm.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/drosgenome1.db_2.8.1.tgz", "Version": "2.8.1", "hasINSTALL": false, "MD5sum": "b5a17115ed697b60ee99b2f581d71414", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Affymetrix Drosophila Genome Array annotation data (chip drosgenome1)", "suggestsMe": [ "tigre" ], "source.ver": "src/contrib/drosgenome1.db_2.8.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate", "RUnit" ], "Package": "drosgenome1.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Drosophila_melanogaster", "drosgenome1" ], "Description": "Affymetrix Drosophila Genome Array annotation data (chip drosgenome1) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/drosgenome1.db_2.8.1.zip" }, "hgu95acdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hgu95acdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "30db8c0d87bc11e77b91bcf3e61d9545", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "hgu95acdf", "suggestsMe": [ "altcdfenvs" ], "source.ver": "src/contrib/hgu95acdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "hgu95acdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "hgu95a" ], "Description": "A package containing an environment representing the HG_U95A.CDF file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hgu95acdf_2.11.0.zip" }, "org.Hs.ipi.db": { "Depends": [ "R(>= 2.12.0)", "methods", "AnnotationDbi (>= 1.3.12)", "PAnnBuilder (>= 1.3.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/org.Hs.ipi.db_1.3.0.tgz", "Version": "1.3.0", "hasINSTALL": false, "MD5sum": "787cc8c4512e1e07c2ef0812024438ca", "Maintainer": "Hong Li ", "Title": "A data package containing annotation data for org.Hs.ipi.db", "suggestsMe": [ "PAnnBuilder" ], "source.ver": "src/contrib/org.Hs.ipi.db_1.3.0.tar.gz", "Imports": [ "methods", "AnnotationDbi", "PAnnBuilder" ], "NeedsCompilation": "no", "Package": "org.Hs.ipi.db", "License": "The Artistic License, Version 2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Homo sapiens", "Proteomics" ], "Description": "Annotation data file for org.Hs.ipi.db assembled using data from public data repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/org.Hs.ipi.db_1.3.0.zip" }, "hom.At.inp.db": { "organism": "Arabidopsis thaliana", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hom.At.inp.db_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "dd13b030dfa234682dbb0991873156f6", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson, Herve Pages", "Title": "Homology information for Arabidopsis thaliana from Inparanoid", "source.ver": "src/contrib/hom.At.inp.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "Package": "hom.At.inp.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Arabidopsis_thaliana", "InparanoidDb" ], "Description": "Homology information for Arabidopsis thaliana from Inparanoid assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hom.At.inp.db_2.8.0.zip" }, "hgu95av2probe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hgu95av2probe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "467b77995d7b3bddaf6d2118282108c2", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type hgu95av2", "suggestsMe": [ "affypdnn", "BiocCaseStudies", "Biostrings", "BSgenome", "gcrma", "maskBAD" ], "source.ver": "src/contrib/hgu95av2probe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "hgu95av2probe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "hgu95av2", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG\\_U95Av2\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hgu95av2probe_2.11.0.zip" }, "riceprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/riceprobe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "1e7e795f351ac6f3ae31dc78d9103745", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type rice", "source.ver": "src/contrib/riceprobe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "riceprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Oryza_sp", "probe", "rice" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Rice\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/riceprobe_2.11.0.zip" }, "rgu34bcdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/rgu34bcdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "6006a5032f68d05a84562e9a5d75f961", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "rgu34bcdf", "source.ver": "src/contrib/rgu34bcdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "rgu34bcdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Rattus_norvegicus", "cdf", "rgu34b" ], "Description": "A package containing an environment representing the RG_U34B.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/rgu34bcdf_2.11.0.zip" }, "pd.plasmodium.anopheles": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.plasmodium.anopheles_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "8183c343d678b717fa314a12bbc52608", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name Plasmodium_Anopheles", "source.ver": "src/contrib/pd.plasmodium.anopheles_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.plasmodium.anopheles", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name Plasmodium_Anopheles", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.plasmodium.anopheles_1.8.0.zip" }, "nugohs1a520180cdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/nugohs1a520180cdf_2.6.0.tgz", "Version": "2.6.0", "hasINSTALL": false, "MD5sum": "3c95ef5312c81f602b9e1dbb7c5fc6b8", "Maintainer": "Philip de Groot ", "Author": "Philip de Groot", "Title": "nugohs1a520180cdf", "source.ver": "src/contrib/nugohs1a520180cdf_2.6.0.tar.gz", "NeedsCompilation": "no", "Package": "nugohs1a520180cdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "nugohs1a520180" ], "Description": "A package containing an environment representing the NuGO_Hs1a520180.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/nugohs1a520180cdf_2.6.0.zip" }, "hgu133a2cdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hgu133a2cdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "b7576e7a394df0d36e4d82ddafab7fa1", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "hgu133a2cdf", "source.ver": "src/contrib/hgu133a2cdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "hgu133a2cdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "hgu133a2" ], "Description": "A package containing an environment representing the HG-U133A_2.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hgu133a2cdf_2.11.0.zip" }, "mu19ksubb.db": { "organism": "Mus musculus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.20.2)", "org.Mm.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/mu19ksubb.db_2.8.1.tgz", "Version": "2.8.1", "hasINSTALL": false, "MD5sum": "1b339f5bd5f7db561aeabebba50c6130", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Affymetrix Murine Genome 19k Set annotation data (chip mu19ksubb)", "source.ver": "src/contrib/mu19ksubb.db_2.8.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate", "RUnit" ], "Package": "mu19ksubb.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Mus_musculus", "mu19ksubb" ], "Description": "Affymetrix Murine Genome 19k Set annotation data (chip mu19ksubb) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/mu19ksubb.db_2.8.1.zip" }, "rat2302probe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/rat2302probe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "857a8e4ba8cd52e45969c8b1e90ca92d", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type rat2302", "source.ver": "src/contrib/rat2302probe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "rat2302probe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Rattus_norvegicus", "probe", "rat2302" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Rat230\\_2\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/rat2302probe_2.11.0.zip" }, "pd.hugene.2.0.st": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.hugene.2.0.st_3.8.0.tgz", "Version": "3.8.0", "hasINSTALL": false, "MD5sum": "3018b6fb1f015de610bc7a878ed98a61", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for Affymetrix HuGene-2_0-st", "source.ver": "src/contrib/pd.hugene.2.0.st_3.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.hugene.2.0.st", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for Affymetrix HuGene-2_0-st", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.hugene.2.0.st_3.8.0.zip" }, "pd.hc.g110": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.hc.g110_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "08fed5ce06acb9f639534bb915dc325d", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name HC_G110", "source.ver": "src/contrib/pd.hc.g110_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.hc.g110", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name HC_G110", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.hc.g110_1.8.0.zip" }, "KEGG.db": { "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/KEGG.db_2.8.0.tgz", "Version": "2.8.0", "dependsOnMe": [ "affycoretools", "annaffy", "attract", "domainsignatures", "ExpressionView", "KEGGprofile", "Mulder2012", "PGSEA" ], "hasINSTALL": false, "MD5sum": "e37e4bbd003140918dbf8ca4900e3196", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "A set of annotation maps for KEGG", "suggestsMe": [ "AnnotationDbi", "BiocCaseStudies", "CancerMutationAnalysis", "Category", "categoryCompare", "eisa", "gage", "gCMAP", "GeneAnswers", "GlobalAncova", "globaltest", "HTSanalyzeR", "KEGGgraph", "MLP", "pcot2", "PCpheno", "phenoTest", "Rsamtools", "RTopper", "SAGx" ], "source.ver": "src/contrib/KEGG.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "Package": "KEGG.db", "License": "file LICENSE", "hasREADME": false, "biocViews": [ "AnnotationData", "FunctionalAnnotation" ], "Description": "A set of annotation maps for KEGG assembled using data from KEGG", "hasLICENSE": true, "importsMe": [ "adSplit", "attract", "clusterProfiler", "ExpressionView", "PADOG", "PCpheno" ], "win.binary.ver": "bin/windows/contrib/2.16/KEGG.db_2.8.0.zip" }, "MmAgilentDesign026655.db": { "organism": "Mus musculus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.20.2)", "org.Mm.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/MmAgilentDesign026655.db_2.8.1.tgz", "Version": "2.8.1", "hasINSTALL": false, "MD5sum": "305084aa7cc23a2d221314da0a6b9dd5", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Agilent Chips that use Agilent design number 026655 annotation data (chip MmAgilentDesign026655)", "source.ver": "src/contrib/MmAgilentDesign026655.db_2.8.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Agilent", "Suggests": [ "annotate", "RUnit" ], "Package": "MmAgilentDesign026655.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AgilentChip", "AnnotationData", "ChipDb", "MmAgilentDesign026655", "Mus_musculus" ], "Description": "Agilent Chips that use Agilent design number 026655 annotation data (chip MmAgilentDesign026655) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/MmAgilentDesign026655.db_2.8.1.zip" }, "Norway981.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)", "org.Hs.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/Norway981.db_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "c6a62c2e24682cacfcbf16d4ec3b257e", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Norway981 http://genome-www5.stanford.edu/ Annotation Data (Norway981)", "source.ver": "src/contrib/Norway981.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Stanford Microarray Database", "Suggests": [ "annotate", "RUnit" ], "Package": "Norway981.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "ChipDb", "Homo_sapiens", "Norway981", "Stanford Microarray DatabaseChip" ], "Description": "Norway981 http://genome-www5.stanford.edu/ Annotation Data (Norway981) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/Norway981.db_2.8.0.zip" }, "mgug4122a.db": { "organism": "Mus musculus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.20.2)", "org.Mm.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/mgug4122a.db_2.8.1.tgz", "Version": "2.8.1", "hasINSTALL": false, "MD5sum": "c1e80ac72442e57ceef1a7d5df25b1f7", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Agilent \"Mouse Genome, Whole\" annotation data (chip mgug4122a)", "source.ver": "src/contrib/mgug4122a.db_2.8.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Agilent", "Suggests": [ "annotate", "RUnit" ], "Package": "mgug4122a.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AgilentChip", "AnnotationData", "ChipDb", "Mus_musculus", "mgug4122a" ], "Description": "Agilent \"Mouse Genome, Whole\" annotation data (chip mgug4122a) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/mgug4122a.db_2.8.1.zip" }, "primeviewcdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/primeviewcdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "a88ad290ec1faa6ab320a556cb4c89b3", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "primeviewcdf", "source.ver": "src/contrib/primeviewcdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "primeviewcdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "primeview" ], "Description": "A package containing an environment representing the PrimeView.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/primeviewcdf_2.11.0.zip" }, "pd.soygene.1.1.st": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.soygene.1.1.st_3.8.0.tgz", "Version": "3.8.0", "hasINSTALL": false, "MD5sum": "c26c33bcbad514baa3a856db735b26f6", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for Affymetrix SoyGene-1_1-st", "source.ver": "src/contrib/pd.soygene.1.1.st_3.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.soygene.1.1.st", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for Affymetrix SoyGene-1_1-st", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.soygene.1.1.st_3.8.0.zip" }, "pd.porgene.1.0.st": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.porgene.1.0.st_3.8.0.tgz", "Version": "3.8.0", "hasINSTALL": false, "MD5sum": "0d2367a5cdb09febb984617696bc8880", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for Affymetrix PorGene-1_0-st", "source.ver": "src/contrib/pd.porgene.1.0.st_3.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.porgene.1.0.st", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for Affymetrix PorGene-1_0-st", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.porgene.1.0.st_3.8.0.zip" }, "pd.ecoli.asv2": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.ecoli.asv2_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "268d5ff877d467dcdc2d5b2f556fec84", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name Ecoli_ASv2", "source.ver": "src/contrib/pd.ecoli.asv2_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.ecoli.asv2", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name Ecoli_ASv2", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.ecoli.asv2_1.8.0.zip" }, "hgu133plus2cdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hgu133plus2cdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "1bcc10b5f52a137aba00a382de258c96", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "hgu133plus2cdf", "suggestsMe": [ "frmaTools", "PREDAsampledata" ], "source.ver": "src/contrib/hgu133plus2cdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "hgu133plus2cdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "hgu133plus2" ], "Description": "A package containing an environment representing the HG-U133_Plus_2.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hgu133plus2cdf_2.11.0.zip" }, "pd.bovgene.1.1.st": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.bovgene.1.1.st_3.8.0.tgz", "Version": "3.8.0", "hasINSTALL": false, "MD5sum": "8156097f6a9930cf51729cf0fbaf9e2c", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for Affymetrix BovGene-1_1-st", "source.ver": "src/contrib/pd.bovgene.1.1.st_3.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.bovgene.1.1.st", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for Affymetrix BovGene-1_1-st", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.bovgene.1.1.st_3.8.0.zip" }, "pd.081229.hg18.promoter.medip.hx1": { "Depends": [ "R (>= 2.11.0)", "methods", "RSQLite (>= 0.7-1)", "oligoClasses (>= 1.9.30)", "oligo (>= 1.11.18)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.081229.hg18.promoter.medip.hx1_0.99.3.tgz", "Version": "0.99.3", "hasINSTALL": false, "MD5sum": "9ea6a0643b0e39abf9b1166c257f542f", "Maintainer": "Martin Aryee ", "Author": "Martin Aryee", "Title": "Platform Design Info for NimbleGen 081229_hg18_promoter_medip_hx1", "source.ver": "src/contrib/pd.081229.hg18.promoter.medip.hx1_0.99.3.tar.gz", "Imports": [ "Biostrings (>= 2.13.50)", "IRanges (>= 1.3.89)" ], "NeedsCompilation": "no", "Package": "pd.081229.hg18.promoter.medip.hx1", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for NimbleGen 081229_hg18_promoter_medip_hx1", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.081229.hg18.promoter.medip.hx1_0.99.3.zip" }, "org.Dm.eg.db": { "organism": "Drosophila melanogaster", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/org.Dm.eg.db_2.8.0.tgz", "Version": "2.8.0", "dependsOnMe": [ "drosgenome1.db", "drosophila2.db", "indac.db" ], "hasINSTALL": false, "MD5sum": "c045ea13e54f15bfa4f383877db62231", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Genome wide annotation for Fly", "suggestsMe": [ "GeneAnswers", "HTSanalyzeR", "RpsiXML" ], "source.ver": "src/contrib/org.Dm.eg.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "Suggests": [ "annotate", "RUnit" ], "Package": "org.Dm.eg.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Drosophila_melanogaster", "OrgDb" ], "Description": "Genome wide annotation for Fly, primarily based on mapping using Entrez Gene identifiers.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/org.Dm.eg.db_2.8.0.zip" }, "ye6100subdcdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/ye6100subdcdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "a4bff50e07fb4298a5dbf1502b0287c6", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "ye6100subdcdf", "source.ver": "src/contrib/ye6100subdcdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "ye6100subdcdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Saccharomyces_cerevisiae", "cdf", "ye6100subd" ], "Description": "A package containing an environment representing the Ye6100subD.CDF file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/ye6100subdcdf_2.11.0.zip" }, "hgug4845a.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.17.27)", "org.Hs.eg.db (>= 2.7.1)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hgug4845a.db_0.0.3.tgz", "Version": "0.0.3", "hasINSTALL": false, "MD5sum": "46133d7bcb6d8c24c026304e8ddd150d", "Maintainer": "Ralph Scherer ", "Author": "Ralph Scherer", "Title": "agilent AMADID 026652 annotation data (chip hgug4845a)", "source.ver": "src/contrib/hgug4845a.db_0.0.3.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "agilent", "Suggests": [ "annotate" ], "Package": "hgug4845a.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Homo_sapiens", "agilentChip", "hgug4845a" ], "Description": "agilent AMADID 026652 annotation data (chip hgug4845a) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hgug4845a.db_0.0.3.zip" }, "pd.ag": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.ag_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "da8240c33ea92a3e922153377d7aa3c0", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name AG", "source.ver": "src/contrib/pd.ag_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.ag", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name AG", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.ag_1.8.0.zip" }, "hgu95av2.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)", "org.Hs.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hgu95av2.db_2.8.0.tgz", "Version": "2.8.0", "dependsOnMe": [ "ChromHeatMap" ], "hasINSTALL": false, "MD5sum": "4a68aeb1532c7b9fc5cf7a8dfd807ff1", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Affymetrix Human Genome U95 Set annotation data (chip hgu95av2)", "suggestsMe": [ "a4Preproc", "annaffy", "annotate", "AnnotationDbi", "AnnotationForge", "BiocCaseStudies", "biocGraph", "BioNet", "Category", "categoryCompare", "eisa", "estrogen", "ExpressionView", "genefilter", "geneplotter", "GOstats", "GSEABase", "GSEAlm", "GSRI", "Heatplus", "idiogram", "macat", "MLInterfaces", "pathRender", "PGSEA", "RGalaxy", "SNAGEE", "SNAGEEdata", "topGO" ], "source.ver": "src/contrib/hgu95av2.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate", "RUnit" ], "Package": "hgu95av2.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Homo_sapiens", "hgu95av2" ], "Description": "Affymetrix Human Genome U95 Set annotation data (chip hgu95av2) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hgu95av2.db_2.8.0.zip" }, "htmg430bcdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/htmg430bcdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "0be635caecda7bf2ec6c7899f5cdee9a", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "htmg430bcdf", "source.ver": "src/contrib/htmg430bcdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "htmg430bcdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "cdf", "htmg430b" ], "Description": "A package containing an environment representing the HT_MG-430B.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/htmg430bcdf_2.11.0.zip" }, "celeganscdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/celeganscdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "48c3dae735b7052789f884407588dcea", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "celeganscdf", "source.ver": "src/contrib/celeganscdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "celeganscdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Caenorhabditis_elegans", "cdf", "celegans" ], "Description": "A package containing an environment representing the Celegans.CDF file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/celeganscdf_2.11.0.zip" }, "m20kcod.db": { "organism": "Mus musculus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.40)", "org.Hs.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/m20kcod.db_2.14.0.tgz", "Version": "2.14.0", "hasINSTALL": false, "MD5sum": "f4747513c70f82142f3a6a92a7080f9e", "Maintainer": "Diego Diez ", "Author": "Diego Diez", "Title": "GE CodeLink UniSet Mouse 20k I Bioarray annotation data (chip m20kcod)", "source.ver": "src/contrib/m20kcod.db_2.14.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "GE", "Suggests": [ "annotate", "RUnit" ], "Package": "m20kcod.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "ChipDb", "GEChip", "Mus_musculus", "m20kcod" ], "Description": "GE CodeLink UniSet Mouse 20k I Bioarray annotation data (chip m20kcod) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/m20kcod.db_2.14.0.zip" }, "SNPlocs.Hsapiens.dbSNP.20110815": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.10)", "IRanges", "GenomicRanges" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/SNPlocs.Hsapiens.dbSNP.20110815_0.99.6.tgz", "Version": "0.99.6", "hasINSTALL": false, "MD5sum": "c8da339bcd83d1fb2ead4b11c3adac53", "Maintainer": "H. Pages ", "Author": "Herve Pages", "Title": "SNP locations for Homo sapiens (dbSNP Build 134)", "suggestsMe": [ "VariantAnnotation" ], "source.ver": "src/contrib/SNPlocs.Hsapiens.dbSNP.20110815_0.99.6.tar.gz", "Imports": [ "methods", "IRanges", "GenomicRanges" ], "NeedsCompilation": "no", "Suggests": [ "Biostrings", "BSgenome (>= 1.16.1)", "BSgenome.Hsapiens.UCSC.hg19" ], "Package": "SNPlocs.Hsapiens.dbSNP.20110815", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Genetics", "Homo_sapiens" ], "Description": "SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 134. The source data files used for this package were created by NCBI on Aug 15, 2011, and contain SNPs mapped to reference genome GRCh37.p2. WARNING: Note that the GRCh37.p2 genome is a patched version of GRCh37 but the patch doesn't alter chromosomes 1-22, X, Y, MT. GRCh37 itself is the same as the hg19 genome from UCSC *except* for the mitochondrion chromosome. Therefore, the SNPs in this package can be \"injected\" in BSgenome.Hsapiens.UCSC.hg19 and they will land at the correct location but this injection will exclude chrM (i.e. nothing will be injected in that sequence).", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/SNPlocs.Hsapiens.dbSNP.20110815_0.99.6.zip" }, "rhesus.db0": { "organism": "Macaca Mulatta", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.7.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/rhesus.db0_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "4cafe66ab30acd664c9a660cf8ecccf8", "Maintainer": "Biocore Team c/o BioC user list ", "Author": "Marc Carlson, Herve Pages", "Title": "Base Level Annotation databases for rhesus", "source.ver": "src/contrib/rhesus.db0_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "Package": "rhesus.db0", "License": "The Artistic License, Version 2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Macaca_Mulatta", "db0" ], "Description": "Base annotation databases for rhesus, intended ONLY to be used by AnnotationDbi to produce regular annotation packages.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/rhesus.db0_2.8.0.zip" }, "pd.mirna.2.0": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.mirna.2.0_3.6.0.tgz", "Version": "3.6.0", "hasINSTALL": false, "MD5sum": "8dad0ebd2df353717ed1e6e297d6605a", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for Affymetrix miRNA-2_0", "source.ver": "src/contrib/pd.mirna.2.0_3.6.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.mirna.2.0", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for Affymetrix miRNA-2_0", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.mirna.2.0_3.6.0.zip" }, "hu35ksubaprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hu35ksubaprobe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "0ad3d6a06a5fba9c7ffbb893b7f73970", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type hu35ksuba", "source.ver": "src/contrib/hu35ksubaprobe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "hu35ksubaprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "hu35ksuba", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Hu35KsubA\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hu35ksubaprobe_2.11.0.zip" }, "org.Ce.eg.db": { "organism": "Caenorhabditis elegans", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/org.Ce.eg.db_2.8.1.tgz", "Version": "2.8.1", "dependsOnMe": [ "celegans.db" ], "hasINSTALL": false, "MD5sum": "81af20b232588d4c703fc79f6ee11ab1", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Genome wide annotation for Worm", "suggestsMe": [ "HTSanalyzeR" ], "source.ver": "src/contrib/org.Ce.eg.db_2.8.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "Suggests": [ "annotate", "RUnit" ], "Package": "org.Ce.eg.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Caenorhabditis_elegans", "OrgDb" ], "Description": "Genome wide annotation for Worm, primarily based on mapping using Entrez Gene identifiers.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/org.Ce.eg.db_2.8.1.zip" }, "illuminaHumanWGDASLv4.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.37)", "org.Hs.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/illuminaHumanWGDASLv4.db_1.16.0.tgz", "Version": "1.16.0", "hasINSTALL": false, "MD5sum": "9f358a7758c251f7514ddf0ee0c30900", "Maintainer": "Mark Dunning ", "Author": "Mark Dunning, Andy Lynch, Matthew Eldridge", "Title": "Illumina HumanWGDASLv4 annotation data (chip illuminaHumanWGDASLv4)", "source.ver": "src/contrib/illuminaHumanWGDASLv4.db_1.16.0.tar.gz", "Imports": [ "methods", "AnnotationDbi", "AnnotationForge" ], "NeedsCompilation": "no", "manufacturer": "Illumina", "Suggests": [ "annotate", "RUnit" ], "Package": "illuminaHumanWGDASLv4.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "ChipDb", "Homo_sapiens", "IlluminaChip", "illuminaHumanWGDASLv4" ], "Description": "Illumina HumanWGDASLv4 annotation data (chip illuminaHumanWGDASLv4) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/illuminaHumanWGDASLv4.db_1.16.0.zip" }, "hgu95c.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)", "org.Hs.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hgu95c.db_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "66a47fb2b8d6c32ec85ea86a11c76360", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Affymetrix Human Genome U95 Set annotation data (chip hgu95c)", "source.ver": "src/contrib/hgu95c.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate", "RUnit" ], "Package": "hgu95c.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Homo_sapiens", "hgu95c" ], "Description": "Affymetrix Human Genome U95 Set annotation data (chip hgu95c) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hgu95c.db_2.8.0.zip" }, "pig.db0": { "organism": "Sus scrofa", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.1.28)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pig.db0_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "b23529ab58e205b535854e29724c862b", "Maintainer": "Biocore Team c/o BioC user list ", "Author": "Marc Carlson, Herve Pages", "Title": "Base Level Annotation databases for pig", "source.ver": "src/contrib/pig.db0_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "Package": "pig.db0", "License": "The Artistic License, Version 2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Sus_scrofa", "db0" ], "Description": "Base annotation databases for pig, intended ONLY to be used by AnnotationDbi to produce regular annotation packages.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pig.db0_2.8.0.zip" }, "pd.zebrafish": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.zebrafish_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "58797245c56f311038ca844bb068a511", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name Zebrafish", "source.ver": "src/contrib/pd.zebrafish_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.zebrafish", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name Zebrafish", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.zebrafish_1.8.0.zip" }, "test1cdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/test1cdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "1960af024c5cb575f1f77fef73d43b32", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "test1cdf", "source.ver": "src/contrib/test1cdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "test1cdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "test1" ], "Description": "A package containing an environment representing the Test1.CDF file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/test1cdf_2.11.0.zip" }, "pd.hg.u133a.2": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.hg.u133a.2_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "f7c5a9ee9e06c270fa8d2e3a0df9ce30", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name HG-U133A_2", "source.ver": "src/contrib/pd.hg.u133a.2_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.hg.u133a.2", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name HG-U133A_2", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.hg.u133a.2_1.8.0.zip" }, "mu19ksubccdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/mu19ksubccdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "6a9430c21a1ee1d57b5bb7bdec4d7fee", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "mu19ksubccdf", "source.ver": "src/contrib/mu19ksubccdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "mu19ksubccdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "cdf", "mu19ksubc" ], "Description": "A package containing an environment representing the Mu19KsubC.CDF file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/mu19ksubccdf_2.11.0.zip" }, "HuExExonProbesetLocationHg18": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/HuExExonProbesetLocationHg18_0.0.2.tgz", "Version": "0.0.2", "hasINSTALL": false, "MD5sum": "cd0b7ece61b6bf37718041dfa7eb3a46", "Maintainer": "Raffaele A. Calogero ", "Author": "Raffaele A. Calogero", "Title": "Exon-level probeset chromosome location for microarrays of type HuEx", "source.ver": "src/contrib/HuExExonProbesetLocationHg18_0.0.2.tar.gz", "NeedsCompilation": "no", "Package": "HuExExonProbesetLocationHg18", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "HuEx" ], "Description": "This package was automatically created by package AnnotationDbi version 1.8.0. The exon-level probeset genome location was retrieved from Netaffx using AffyCompatible. The exon-level probeset genome location was retrieved from Netaffx using AffyCompatible. Genome release hg18.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/HuExExonProbesetLocationHg18_0.0.2.zip" }, "illuminaHumanv2BeadID.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.11.8)", "org.Hs.eg.db (>= 2.4.5)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/illuminaHumanv2BeadID.db_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "b5a2b2deaa9a9b245a141043e7bc5270", "Maintainer": "Mark Dunning ", "Author": "Mark Dunning, Matt Ritchie, Nuno Barbosa-Morais", "Title": "Illumina HumanWGv2 annotation data (chip illuminaHumanv2BeadID)", "source.ver": "src/contrib/illuminaHumanv2BeadID.db_1.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Illumina", "Suggests": [ "annotate" ], "Package": "illuminaHumanv2BeadID.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Homo_sapiens", "IlluminaChip", "illuminaHumanv2BeadID" ], "Description": "Illumina HumanWGv2 annotation data (chip illuminaHumanv2BeadID) assembled using data from public repositories to be used with data summarized from bead-level data with numeric ArrayAddressIDs as keys. Illumina probes with a No match or Bad quality score were removed prior to annotation. See http://www.compbio.group.cam.ac.uk/Resources/Annotation/index.html and Barbosa-Morais et al (2010) A re-annotation pipeline for Illumina BeadArrays: improving the interpretation of gene expression data. Nucleic Acids Research.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/illuminaHumanv2BeadID.db_1.8.0.zip" }, "worm.db0": { "organism": "Caenorhabditis elegans", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.1.28)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/worm.db0_2.8.1.tgz", "Version": "2.8.1", "hasINSTALL": false, "MD5sum": "d45d039f290b6e03f3c8fe10d5d6de9a", "Maintainer": "Biocore Team c/o BioC user list ", "Author": "Marc Carlson, Herve Pages", "Title": "Base Level Annotation databases for worm", "source.ver": "src/contrib/worm.db0_2.8.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "Package": "worm.db0", "License": "The Artistic License, Version 2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Caenorhabditis_elegans", "db0" ], "Description": "Base annotation databases for worm, intended ONLY to be used by AnnotationDbi to produce regular annotation packages.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/worm.db0_2.8.1.zip" }, "pd.mouse430a.2": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.mouse430a.2_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "d158c6c781741a93f34535e68fe6eb12", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name Mouse430A_2", "source.ver": "src/contrib/pd.mouse430a.2_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.mouse430a.2", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name Mouse430A_2", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.mouse430a.2_1.8.0.zip" }, "pd.e.coli.2": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.e.coli.2_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "537cb77f0fae9824ee8a7ba1cb5156d1", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name E_coli_2", "source.ver": "src/contrib/pd.e.coli.2_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.e.coli.2", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name E_coli_2", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.e.coli.2_1.8.0.zip" }, "cottoncdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/cottoncdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "cdb9e8ae8233b404cbd5ab596293b375", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "cottoncdf", "source.ver": "src/contrib/cottoncdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "cottoncdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Gossypium_arboretum", "Gossypium_barbadense", "Gossypium_hirsutum", "Gossypium_raimondii", "cdf", "cotton" ], "Description": "A package containing an environment representing the Cotton.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/cottoncdf_2.11.0.zip" }, "hugene11stprobeset.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.15.34)", "org.Hs.eg.db (>= 2.6.3)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hugene11stprobeset.db_4.0.1.tgz", "Version": "4.0.1", "hasINSTALL": false, "MD5sum": "f5d12bdb6e4dec92c519e7efbe36e7dc", "Maintainer": "Li, Arthur ", "Author": "Arthur Li", "Title": "Affymetrix Human Gene 1.1-ST Array Probeset Revision 4 annotation data (chip hugene11stprobeset)", "source.ver": "src/contrib/hugene11stprobeset.db_4.0.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate" ], "Package": "hugene11stprobeset.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "hugene11stprobeset" ], "Description": "Affymetrix Human Gene 1.1-ST Array Probeset Revision 4 annotation data (chip hugene11stprobeset) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hugene11stprobeset.db_4.0.1.zip" }, "mgu74a.db": { "organism": "Mus musculus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.20.2)", "org.Mm.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/mgu74a.db_2.8.1.tgz", "Version": "2.8.1", "hasINSTALL": false, "MD5sum": "46946ad6b5e8b34990085e312e4e0432", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Affymetrix Murine Genome U74v2 annotation data (chip mgu74a)", "source.ver": "src/contrib/mgu74a.db_2.8.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate", "RUnit" ], "Package": "mgu74a.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Mus_musculus", "mgu74a" ], "Description": "Affymetrix Murine Genome U74v2 annotation data (chip mgu74a) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/mgu74a.db_2.8.1.zip" }, "hu35ksubbcdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hu35ksubbcdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "e3fe1f8dd774be4cee213ec3163bdb35", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "hu35ksubbcdf", "source.ver": "src/contrib/hu35ksubbcdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "hu35ksubbcdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "hu35ksubb" ], "Description": "A package containing an environment representing the Hu35KsubB.CDF file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hu35ksubbcdf_2.11.0.zip" }, "chicken.db0": { "organism": "Gallus gallus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.1.28)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/chicken.db0_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "5e52bbec30d7ec5dad103f020408be40", "Maintainer": "Biocore Team c/o BioC user list ", "Author": "Marc Carlson, Herve Pages", "Title": "Base Level Annotation databases for chicken", "source.ver": "src/contrib/chicken.db0_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "Package": "chicken.db0", "License": "The Artistic License, Version 2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Gallus_gallus", "db0" ], "Description": "Base annotation databases for chicken, intended ONLY to be used by AnnotationDbi to produce regular annotation packages.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/chicken.db0_2.8.0.zip" }, "HuExExonProbesetLocationHg19": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.8)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/HuExExonProbesetLocationHg19_0.0.3.tgz", "Version": "0.0.3", "hasINSTALL": false, "MD5sum": "d60766f82ac8abd8b9801ffa07772058", "Maintainer": "Raffaele A. Calogero ", "Author": "Raffaele A. Calogero", "Title": "Exon-level probeset chromosome location for microarrays of type HuEx", "source.ver": "src/contrib/HuExExonProbesetLocationHg19_0.0.3.tar.gz", "NeedsCompilation": "no", "Package": "HuExExonProbesetLocationHg19", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "HuEx" ], "Description": "This package was automatically created by package AnnotationDbi version 1.11.8. The exon-level probeset genome location was retrieved from Netaffx using AffyCompatible. The exon-level probeset genome location was retrieved from Netaffx using AffyCompatible. Genome release hg19.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/HuExExonProbesetLocationHg19_0.0.3.zip" }, "Mu22v3.db": { "organism": "Mus musculus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.20.2)", "org.Mm.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/Mu22v3.db_2.8.1.tgz", "Version": "2.8.1", "hasINSTALL": false, "MD5sum": "9d580708dd81f072e5e119e913a0914c", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "FHCRC Genomics Shared Resource Mu22v3 Annotation Data (Mu22v3)", "source.ver": "src/contrib/Mu22v3.db_2.8.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "FHCRC Genomics Shared Resource", "Suggests": [ "annotate", "RUnit" ], "Package": "Mu22v3.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "ChipDb", "FHCRC Genomics Shared ResourceChip", "Mu22v3", "Mus_musculus" ], "Description": "FHCRC Genomics Shared Resource Mu22v3 Annotation Data (Mu22v3) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/Mu22v3.db_2.8.1.zip" }, "xenopuslaeviscdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/xenopuslaeviscdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "3acae915db23448b0511937a738b2ead", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "xenopuslaeviscdf", "source.ver": "src/contrib/xenopuslaeviscdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "xenopuslaeviscdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Xenopis_laevis", "cdf", "xenopuslaevis" ], "Description": "A package containing an environment representing the Xenopus_laevis.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/xenopuslaeviscdf_2.11.0.zip" }, "pd.cyrgene.1.1.st": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.cyrgene.1.1.st_3.8.0.tgz", "Version": "3.8.0", "hasINSTALL": false, "MD5sum": "8998e505b55ee37216a247cecd33eaa9", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for Affymetrix CyRGene-1_1-st", "source.ver": "src/contrib/pd.cyrgene.1.1.st_3.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.cyrgene.1.1.st", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for Affymetrix CyRGene-1_1-st", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.cyrgene.1.1.st_3.8.0.zip" }, "mogene10stv1cdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/mogene10stv1cdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "39f35e4bdcbc7452473b62560657d3bf", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "mogene10stv1cdf", "source.ver": "src/contrib/mogene10stv1cdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "mogene10stv1cdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "cdf", "mogene10stv1" ], "Description": "A package containing an environment representing the MoGene-1_0-st-v1.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/mogene10stv1cdf_2.11.0.zip" }, "humanomni1quadv1bCrlmm": { "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/humanomni1quadv1bCrlmm_1.0.3.tgz", "Version": "1.0.3", "hasINSTALL": false, "MD5sum": "c205b4b3c24665bb438ba8aa3c17f5a3", "Maintainer": "Matthew Ritchie ", "Author": "Rafael A Irizarry", "Title": "Metadata for fast genotyping with the 'crlmm' package", "source.ver": "src/contrib/humanomni1quadv1bCrlmm_1.0.3.tar.gz", "Imports": [ "utils" ], "NeedsCompilation": "no", "Package": "humanomni1quadv1bCrlmm", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Package with metadata for genotyping Illumina Omni1 Quad arrays using the 'crlmm' package.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/humanomni1quadv1bCrlmm_1.0.3.zip" }, "gahgu95bprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.5.24)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/gahgu95bprobe_2.2.0.tgz", "Version": "2.2.0", "hasINSTALL": false, "MD5sum": "cf368eab27f1536536f7d6a82b011f85", "Maintainer": "Francesco Ferrari", "Author": "Francesco Ferrari, Stefania Bortoluzzi, Alessandro Coppe, Alexandra Sirota, Marilyn Safran, Michael Shmoish, Sergio Ferrari, Doron Lancet, Gian Antonio Danieli and Silvio Bicciato.", "Title": "Probe sequence data for microarrays of type gahgu95b", "source.ver": "src/contrib/gahgu95bprobe_2.2.0.tar.gz", "NeedsCompilation": "no", "Package": "gahgu95bprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "GACustomCDF", "Homo_sapiens", "gahgu95b" ], "Description": "This package was automatically created by package AnnotationDbi version 1.5.24. The probe sequence data was obtained from http://www.affymetrix.com.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/gahgu95bprobe_2.2.0.zip" }, "hu35ksubbprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hu35ksubbprobe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "966cd7f066c5b679fb8cdbe612632748", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type hu35ksubb", "source.ver": "src/contrib/hu35ksubbprobe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "hu35ksubbprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "hu35ksubb", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Hu35KsubB\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hu35ksubbprobe_2.11.0.zip" }, "sugarcanecdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/sugarcanecdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "529ed714d1014073b49e5e2a04d6d96f", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "sugarcanecdf", "source.ver": "src/contrib/sugarcanecdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "sugarcanecdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Saccharum_officinarum", "cdf", "sugarcane" ], "Description": "A package containing an environment representing the Sugar_Cane.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/sugarcanecdf_2.11.0.zip" }, "pd.cytogenetics.array": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.cytogenetics.array_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "fe3b1b512f357be20b43a085d1962243", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for Affymetrix Cytogenetics_Array", "source.ver": "src/contrib/pd.cytogenetics.array_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.cytogenetics.array", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for Affymetrix Cytogenetics_Array", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.cytogenetics.array_1.8.0.zip" }, "mpedbarray.db": { "organism": "Mus musculus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.20.2)", "org.Mm.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/mpedbarray.db_2.8.1.tgz", "Version": "2.8.1", "hasINSTALL": false, "MD5sum": "e08b3afcb57316ecede1613ca1d08713", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "FHCRC Nelson Lab mpedbarray Annotation Data (mpedbarray)", "source.ver": "src/contrib/mpedbarray.db_2.8.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "FHCRC Nelson Lab", "Suggests": [ "annotate", "RUnit" ], "Package": "mpedbarray.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "ChipDb", "FHCRC Nelson LabChip", "Mus_musculus", "mpedbarray" ], "Description": "FHCRC Nelson Lab mpedbarray Annotation Data (mpedbarray) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/mpedbarray.db_2.8.1.zip" }, "hu6800subacdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hu6800subacdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "e9e105d67710fb8d9d258fc3fa9fff69", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "hu6800subacdf", "source.ver": "src/contrib/hu6800subacdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "hu6800subacdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "hu6800suba" ], "Description": "A package containing an environment representing the Hu6800subA.CDF file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hu6800subacdf_2.11.0.zip" }, "BSgenome.Alyrata.JGI.v1": { "organism": "Arabidopsis lyrata", "Depends": [ "BSgenome (>= 1.19.5)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/BSgenome.Alyrata.JGI.v1_1.0.0.tgz", "Version": "1.0.0", "hasINSTALL": false, "MD5sum": "2119e78ebb1957fd55ab186b167e0995", "Maintainer": "Jian-Feng Mao ", "Author": "Jian-Feng Mao and Ya-Long Guo, with acknowledgement to Detlef Weigel", "Title": "Arabidopsis lyrata full genome (JGI version V1.0)", "source.ver": "src/contrib/BSgenome.Alyrata.JGI.v1_1.0.0.tar.gz", "Imports": [ "BSgenome" ], "NeedsCompilation": "no", "Package": "BSgenome.Alyrata.JGI.v1", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "Alyrata", "AnnotationData", "Genetics" ], "Description": "Arabidopsis lyrata 8x Release [project ID 4002920] as provided by JGI ( snapshot from March 24, 2011) and stored in Biostrings objects.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/BSgenome.Alyrata.JGI.v1_1.0.0.zip" }, "bovine.db": { "organism": "Bos taurus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.20.2)", "org.Bt.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/bovine.db_2.8.1.tgz", "Version": "2.8.1", "hasINSTALL": false, "MD5sum": "3a263f28272842e239fb7bd17efe1afd", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Affymetrix bovine annotation data (chip bovine)", "source.ver": "src/contrib/bovine.db_2.8.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate", "RUnit" ], "Package": "bovine.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Bos_taurus", "ChipDb", "bovine" ], "Description": "Affymetrix bovine annotation data (chip bovine) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/bovine.db_2.8.1.zip" }, "BSgenome.Amellifera.UCSC.apiMel2": { "organism": "Apis mellifera", "Depends": [ "BSgenome (>= 1.14.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/BSgenome.Amellifera.UCSC.apiMel2_1.3.16.tgz", "Version": "1.3.16", "hasINSTALL": false, "MD5sum": "602f3837e45eab113cda83afd605b1e3", "Maintainer": "Biocore Team c/o BioC user list ", "Author": "H. Pages", "Title": "Apis mellifera (Honey Bee) full genome (UCSC version apiMel2)", "source.ver": "src/contrib/BSgenome.Amellifera.UCSC.apiMel2_1.3.16.tar.gz", "Imports": [ "BSgenome" ], "NeedsCompilation": "no", "Package": "BSgenome.Amellifera.UCSC.apiMel2", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Apis_mellifera", "Genetics" ], "Description": "Apis mellifera (Honey Bee) full genome as provided by UCSC (apiMel2, Jan. 2005) and stored in Biostrings objects.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/BSgenome.Amellifera.UCSC.apiMel2_1.3.16.zip" }, "human650v3aCrlmm": { "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/human650v3aCrlmm_1.0.3.tgz", "Version": "1.0.3", "hasINSTALL": false, "MD5sum": "4b0de367ccc0f7499dcffe21ef1893c2", "Maintainer": "Matthew Ritchie ", "Author": "Rafael A Irizarry", "Title": "Metadata for fast genotyping with the 'crlmm' package", "source.ver": "src/contrib/human650v3aCrlmm_1.0.3.tar.gz", "Imports": [ "utils" ], "NeedsCompilation": "no", "Package": "human650v3aCrlmm", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Package with metadata for genotyping Illumina 650k arrays using the 'crlmm' package.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/human650v3aCrlmm_1.0.3.zip" }, "RnAgilentDesign028282.db": { "organism": "Rattus norvegicus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.20.2)", "org.Rn.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/RnAgilentDesign028282.db_2.8.1.tgz", "Version": "2.8.1", "hasINSTALL": false, "MD5sum": "34d0f6f0f00fa675fc9492ff8fe102bb", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Agilent Chips that use Agilent design number 028282 annotation data (chip RnAgilentDesign028282)", "source.ver": "src/contrib/RnAgilentDesign028282.db_2.8.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Agilent", "Suggests": [ "annotate", "RUnit" ], "Package": "RnAgilentDesign028282.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AgilentChip", "AnnotationData", "ChipDb", "Rattus_norvegicus", "RnAgilentDesign028282" ], "Description": "Agilent Chips that use Agilent design number 028282 annotation data (chip RnAgilentDesign028282) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/RnAgilentDesign028282.db_2.8.1.zip" }, "BSgenome.Mmusculus.UCSC.mm10": { "organism": "Mus musculus", "Depends": [ "BSgenome (>= 1.25.4)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/BSgenome.Mmusculus.UCSC.mm10_1.3.19.tgz", "Version": "1.3.19", "hasINSTALL": false, "MD5sum": "53a5d03e297f81d81f5850cc71cc5b5d", "Maintainer": "Bioconductor Package Maintainer ", "Author": "The Bioconductor Dev Team", "Title": "Mus musculus (Mouse) full genome (UCSC version mm10)", "source.ver": "src/contrib/BSgenome.Mmusculus.UCSC.mm10_1.3.19.tar.gz", "Imports": [ "BSgenome" ], "NeedsCompilation": "no", "Package": "BSgenome.Mmusculus.UCSC.mm10", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Genetics", "Mus_musculus" ], "Description": "Mus musculus (Mouse) full genome as provided by UCSC (mm10, Dec. 2011) and stored in Biostrings objects.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/BSgenome.Mmusculus.UCSC.mm10_1.3.19.zip" }, "Mu15v1.db": { "organism": "Mus musculus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.20.2)", "org.Mm.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/Mu15v1.db_2.8.1.tgz", "Version": "2.8.1", "hasINSTALL": false, "MD5sum": "4e56628c7ad5b4b8a00abe61bea6304b", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "FHCRC Genomics Shared Resource Mu15v1 Annotation Data (Mu15v1)", "source.ver": "src/contrib/Mu15v1.db_2.8.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "FHCRC Genomics Shared Resource", "Suggests": [ "annotate", "RUnit" ], "Package": "Mu15v1.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "ChipDb", "FHCRC Genomics Shared ResourceChip", "Mu15v1", "Mus_musculus" ], "Description": "FHCRC Genomics Shared Resource Mu15v1 Annotation Data (Mu15v1) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/Mu15v1.db_2.8.1.zip" }, "agprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/agprobe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "6b2a60e54c6b4f0a286295c3a3e29963", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type ag", "source.ver": "src/contrib/agprobe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "agprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Arabidopsis_thaliana", "ag", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was AG\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/agprobe_2.11.0.zip" }, "m10kcod.db": { "organism": "Mus musculus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.40)", "org.Hs.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/m10kcod.db_2.14.0.tgz", "Version": "2.14.0", "hasINSTALL": false, "MD5sum": "3e739a05d218f7a6ebbee6dd0a2124f7", "Maintainer": "Diego Diez ", "Author": "Diego Diez", "Title": "GE CodeLink UniSet Mouse I Bioarray (~10 000 mouse gene targets) annotation data (chip m10kcod)", "source.ver": "src/contrib/m10kcod.db_2.14.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "GE", "Suggests": [ "annotate", "RUnit" ], "Package": "m10kcod.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "ChipDb", "GEChip", "Mus_musculus", "m10kcod" ], "Description": "GE CodeLink UniSet Mouse I Bioarray (~10 000 mouse gene targets) annotation data (chip m10kcod) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/m10kcod.db_2.14.0.zip" }, "wheatcdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/wheatcdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "04482ee3ff86bbaa514b8acd98808fd7", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "wheatcdf", "source.ver": "src/contrib/wheatcdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "wheatcdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "Aegilops_tauschii", "AffymetrixChip", "AnnotationData", "Triticum_sp", "cdf", "wheat" ], "Description": "A package containing an environment representing the wheat.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/wheatcdf_2.11.0.zip" }, "hthgu133aprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hthgu133aprobe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "be26491c737dba69ae2a365cc35b3aaa", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type hthgu133a", "source.ver": "src/contrib/hthgu133aprobe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "hthgu133aprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "hthgu133a", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HT\\_HG-U133A\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hthgu133aprobe_2.11.0.zip" }, "BSgenome.Drerio.UCSC.danRer5": { "organism": "Danio rerio", "Depends": [ "BSgenome (>= 1.19.2)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/BSgenome.Drerio.UCSC.danRer5_1.3.17.tgz", "Version": "1.3.17", "hasINSTALL": false, "MD5sum": "f65fa91690bd5f6acc0cf22ffcd6afdd", "Maintainer": "Biocore Team c/o BioC user list ", "Author": "H. Pages", "Title": "Danio rerio (Zebrafish) full genome (UCSC version danRer5)", "source.ver": "src/contrib/BSgenome.Drerio.UCSC.danRer5_1.3.17.tar.gz", "Imports": [ "BSgenome" ], "NeedsCompilation": "no", "Package": "BSgenome.Drerio.UCSC.danRer5", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Danio_rerio", "Genetics" ], "Description": "Danio rerio (Zebrafish) full genome as provided by UCSC (danRer5, Jul. 2007) and stored in Biostrings objects.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/BSgenome.Drerio.UCSC.danRer5_1.3.17.zip" }, "TxDb.Scerevisiae.UCSC.sacCer3.sgdGene": { "organism": "Saccharomyces cerevisiae", "Depends": [ "GenomicFeatures (>= 1.10.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/TxDb.Scerevisiae.UCSC.sacCer3.sgdGene_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "31c3dd7fbd7e0348e63ffb441c8ab032", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Annotation package for TranscriptDb object(s)", "source.ver": "src/contrib/TxDb.Scerevisiae.UCSC.sacCer3.sgdGene_2.8.0.tar.gz", "Imports": [ "GenomicFeatures", "AnnotationDbi" ], "NeedsCompilation": "no", "Package": "TxDb.Scerevisiae.UCSC.sacCer3.sgdGene", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Genetics", "Saccharomyces_cerevisiae", "TranscriptDb" ], "Description": "Exposes an annotation databases generated from UCSC by exposing these as TranscriptDb objects", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/TxDb.Scerevisiae.UCSC.sacCer3.sgdGene_2.8.0.zip" }, "FDb.FANTOM4.promoters.hg19": { "organism": "Homo sapiens", "Depends": [ "GenomicFeatures (>= 1.7.22)", "Biostrings" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/FDb.FANTOM4.promoters.hg19_1.0.0.tgz", "Version": "1.0.0", "hasINSTALL": false, "MD5sum": "99a610eb895470e3d945acc5cfb3ebe6", "Maintainer": "Tim Triche, Jr. ", "Author": "Tim Triche, Jr.", "Title": "Annotation package for FANTOM4 promoters identified from THP-1 cells", "source.ver": "src/contrib/FDb.FANTOM4.promoters.hg19_1.0.0.tar.gz", "Imports": [ "GenomicFeatures", "AnnotationDbi" ], "NeedsCompilation": "no", "Suggests": [ "BSgenome.Hsapiens.UCSC.hg19", "rtracklayer", "matrixStats" ], "Package": "FDb.FANTOM4.promoters.hg19", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Homo_sapiens" ], "Description": "FANTOM4 promoters, liftOver'ed from hg18 to hg19, CpGs quantified", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/FDb.FANTOM4.promoters.hg19_1.0.0.zip" }, "BSgenome.Drerio.UCSC.danRer6": { "organism": "Danio rerio", "Depends": [ "BSgenome (>= 1.19.2)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/BSgenome.Drerio.UCSC.danRer6_1.3.17.tgz", "Version": "1.3.17", "hasINSTALL": false, "MD5sum": "214a9847413cb244041880d31c041880", "Maintainer": "Biocore Team c/o BioC user list ", "Author": "H. Pages", "Title": "Danio rerio (Zebrafish) full genome (UCSC version danRer6)", "source.ver": "src/contrib/BSgenome.Drerio.UCSC.danRer6_1.3.17.tar.gz", "Imports": [ "BSgenome" ], "NeedsCompilation": "no", "Package": "BSgenome.Drerio.UCSC.danRer6", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Danio_rerio", "Genetics" ], "Description": "Danio rerio (Zebrafish) full genome as provided by UCSC (danRer6, Dec. 2008) and stored in Biostrings objects.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/BSgenome.Drerio.UCSC.danRer6_1.3.17.zip" }, "mogene10stv1probe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/mogene10stv1probe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "fca23977d8e9af8a98075c6e66f1c193", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type mogene10stv1", "source.ver": "src/contrib/mogene10stv1probe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "mogene10stv1probe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "mogene10stv1", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was MoGene-1\\_0-st-v1\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/mogene10stv1probe_2.11.0.zip" }, "hcg110cdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hcg110cdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "57b1c4fa6499c02be512657bb11c68bd", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "hcg110cdf", "source.ver": "src/contrib/hcg110cdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "hcg110cdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "hcg110" ], "Description": "A package containing an environment representing the HC_G110.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hcg110cdf_2.11.0.zip" }, "u133x3p.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)", "org.Hs.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/u133x3p.db_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "ebeb6c637fac52f09a46b028160b6c5e", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Affymetrix Human X3P Array annotation data (chip u133x3p)", "source.ver": "src/contrib/u133x3p.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate", "RUnit" ], "Package": "u133x3p.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Homo_sapiens", "u133x3p" ], "Description": "Affymetrix Human X3P Array annotation data (chip u133x3p) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/u133x3p.db_2.8.0.zip" }, "rae230aprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/rae230aprobe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "8f1288a3d9e9ffe08d392605c9380b46", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type rae230a", "suggestsMe": [ "annotate" ], "source.ver": "src/contrib/rae230aprobe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "rae230aprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Rattus_norvegicus", "probe", "rae230a" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was RAE230A\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/rae230aprobe_2.11.0.zip" }, "pd.cangene.1.0.st": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.cangene.1.0.st_3.8.0.tgz", "Version": "3.8.0", "hasINSTALL": false, "MD5sum": "9f9bf8398156c6defcbce20155f50d33", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for Affymetrix CanGene-1_0-st", "source.ver": "src/contrib/pd.cangene.1.0.st_3.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.cangene.1.0.st", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for Affymetrix CanGene-1_0-st", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.cangene.1.0.st_3.8.0.zip" }, "ecoliprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/ecoliprobe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "8fac0b09cd097c6dfc55f4c281571143", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type ecoli", "source.ver": "src/contrib/ecoliprobe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "ecoliprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Escherichia_coli", "ecoli", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was E\\_coli\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/ecoliprobe_2.11.0.zip" }, "htmg430pmcdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/htmg430pmcdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "9595dcb00b5021ecada1c0c4c3559e58", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "htmg430pmcdf", "source.ver": "src/contrib/htmg430pmcdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "htmg430pmcdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "cdf", "htmg430pm" ], "Description": "A package containing an environment representing the HT_MG-430_PM.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/htmg430pmcdf_2.11.0.zip" }, "gahgu95cprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.5.24)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/gahgu95cprobe_2.2.0.tgz", "Version": "2.2.0", "hasINSTALL": false, "MD5sum": "c5f2e81ed67934e74ba19693ac8257c8", "Maintainer": "Francesco Ferrari", "Author": "Francesco Ferrari, Stefania Bortoluzzi, Alessandro Coppe, Alexandra Sirota, Marilyn Safran, Michael Shmoish, Sergio Ferrari, Doron Lancet, Gian Antonio Danieli and Silvio Bicciato.", "Title": "Probe sequence data for microarrays of type gahgu95c", "source.ver": "src/contrib/gahgu95cprobe_2.2.0.tar.gz", "NeedsCompilation": "no", "Package": "gahgu95cprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "GACustomCDF", "Homo_sapiens", "gahgu95c" ], "Description": "This package was automatically created by package AnnotationDbi version 1.5.24. The probe sequence data was obtained from http://www.affymetrix.com.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/gahgu95cprobe_2.2.0.zip" }, "porcine.db": { "organism": "Sus scrofa", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)", "org.Hs.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/porcine.db_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "345ecf925bd8871a0574d92b095bdd0c", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Affymetrix porcine annotation data (chip porcine)", "source.ver": "src/contrib/porcine.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate", "RUnit" ], "Package": "porcine.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Sus_scrofa", "porcine" ], "Description": "Affymetrix porcine annotation data (chip porcine) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/porcine.db_2.8.0.zip" }, "pd.feinberg.mm8.me.hx1": { "Depends": [ "R (>= 2.11.0)", "methods", "RSQLite (>= 0.7-1)", "oligoClasses (>= 1.9.30)", "oligo (>= 1.11.18)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.feinberg.mm8.me.hx1_0.99.2.tgz", "Version": "0.99.2", "hasINSTALL": false, "MD5sum": "de79832e48f5dd82dffc627c0cd0111c", "Maintainer": "Martin Aryee ", "Author": "Martin Aryee", "Title": "Platform Design Info for NimbleGen feinberg_mm8_me_hx1", "source.ver": "src/contrib/pd.feinberg.mm8.me.hx1_0.99.2.tar.gz", "Imports": [ "Biostrings (>= 2.13.50)", "IRanges (>= 1.3.89)" ], "NeedsCompilation": "no", "Package": "pd.feinberg.mm8.me.hx1", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for NimbleGen feinberg_mm8_me_hx1", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.feinberg.mm8.me.hx1_0.99.2.zip" }, "pd.charm.hg18.example": { "Depends": [ "R (>= 2.11.0)", "methods", "RSQLite (>= 0.7-1)", "oligoClasses (>= 1.9.30)", "oligo (>= 1.11.18)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.charm.hg18.example_0.99.2.tgz", "Version": "0.99.2", "dependsOnMe": [ "charmData" ], "hasINSTALL": false, "MD5sum": "ca8a412fcde36e160abc74dd55e77ea5", "Maintainer": "Martin Aryee ", "Author": "Martin Aryee", "Title": "Platform Design Info for NimbleGen charm_hg18_example", "source.ver": "src/contrib/pd.charm.hg18.example_0.99.2.tar.gz", "Imports": [ "Biostrings (>= 2.13.50)", "IRanges (>= 1.3.89)" ], "NeedsCompilation": "no", "Package": "pd.charm.hg18.example", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for NimbleGen charm_hg18_example", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.charm.hg18.example_0.99.2.zip" }, "BSgenome.Drerio.UCSC.danRer7": { "organism": "Danio rerio", "Depends": [ "BSgenome (>= 1.19.4)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/BSgenome.Drerio.UCSC.danRer7_1.3.17.tgz", "Version": "1.3.17", "hasINSTALL": false, "MD5sum": "54376c155adefeeaafc84cf4460705c4", "Maintainer": "Biocore Team c/o BioC user list ", "Author": "H. Pages", "Title": "Danio rerio (Zebrafish) full genome (UCSC version danRer7)", "source.ver": "src/contrib/BSgenome.Drerio.UCSC.danRer7_1.3.17.tar.gz", "Imports": [ "BSgenome" ], "NeedsCompilation": "no", "Package": "BSgenome.Drerio.UCSC.danRer7", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Danio_rerio", "Genetics" ], "Description": "Danio rerio (Zebrafish) full genome as provided by UCSC (danRer7, Jul. 2010) and stored in Biostrings objects.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/BSgenome.Drerio.UCSC.danRer7_1.3.17.zip" }, "nugohs1a520180probe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/nugohs1a520180probe_2.6.0.tgz", "Version": "2.6.0", "hasINSTALL": false, "MD5sum": "4c4bdd60f3ee889ba202de74fca12f87", "Maintainer": "Philip de Groot ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type nugohs1a520180", "source.ver": "src/contrib/nugohs1a520180probe_2.6.0.tar.gz", "NeedsCompilation": "no", "Package": "nugohs1a520180probe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "nugohs1a520180", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/nugohs1a520180probe_2.6.0.zip" }, "human1mv1cCrlmm": { "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/human1mv1cCrlmm_1.0.3.tgz", "Version": "1.0.3", "hasINSTALL": false, "MD5sum": "b9f638c7b0ede50cb070f1bae85eb4dc", "Maintainer": "Matthew Ritchie ", "Author": "Rafael A Irizarry", "Title": "Metadata for fast genotyping with the 'crlmm' package", "source.ver": "src/contrib/human1mv1cCrlmm_1.0.3.tar.gz", "Imports": [ "utils" ], "NeedsCompilation": "no", "Package": "human1mv1cCrlmm", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Package with metadata fast genotyping Illumina 1M arrays using the 'crlmm' package.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/human1mv1cCrlmm_1.0.3.zip" }, "mgu74bv2probe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/mgu74bv2probe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "bd350b3278ef35cd22dc55737625f3c4", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type mgu74bv2", "source.ver": "src/contrib/mgu74bv2probe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "mgu74bv2probe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "mgu74bv2", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was MG-U74Bv2\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/mgu74bv2probe_2.11.0.zip" }, "canine2cdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/canine2cdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "57a3bf7d8f7865c59289da22d58aa657", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "canine2cdf", "source.ver": "src/contrib/canine2cdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "canine2cdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Canis_familiaris", "canine2", "cdf" ], "Description": "A package containing an environment representing the Canine_2.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/canine2cdf_2.11.0.zip" }, "mirna10probe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/mirna10probe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "82e09cd96c52c2ae841b37a543a1907b", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type mirna10", "source.ver": "src/contrib/mirna10probe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "mirna10probe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "mirna10", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was miRNA-1\\_0\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/mirna10probe_2.11.0.zip" }, "bsubtiliscdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/bsubtiliscdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "48e57252a02d518ac71ce72317ccc733", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "bsubtiliscdf", "source.ver": "src/contrib/bsubtiliscdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "bsubtiliscdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Bacillus_subtilis", "bsubtilis", "cdf" ], "Description": "A package containing an environment representing the Bsubtilis.CDF file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/bsubtiliscdf_2.11.0.zip" }, "GO.db": { "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/GO.db_2.8.0.tgz", "Version": "2.8.0", "dependsOnMe": [ "affycoretools", "annaffy", "ChIPpeakAnno", "davidTiling", "ExpressionView", "GeneGroupAnalysis", "GOFunction", "goProfiles", "goTools", "Homo.sapiens", "Mus.musculus", "PGSEA", "Rattus.norvegicus", "ScISI", "topGO" ], "hasINSTALL": false, "MD5sum": "667578e99cc7b8d1de1b03dcb580ff27", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "A set of annotation maps describing the entire Gene Ontology", "suggestsMe": [ "Agi4x44PreProcess", "annotate", "AnnotationDbi", "AnnotationForge", "AnnotationFuncs", "BiocCaseStudies", "Category", "categoryCompare", "cellHTS", "eisa", "gage", "GeneAnswers", "GlobalAncova", "globaltest", "goseq", "GOstats", "GSEABase", "hpar", "HTSanalyzeR", "mgsa", "MLP", "pcaGoPromoter", "PCpheno", "phenoTest", "RforProteomics", "rols", "RTopper", "safe", "SLGI", "yeastExpData" ], "source.ver": "src/contrib/GO.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "Package": "GO.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "FunctionalAnnotation" ], "Description": "A set of annotation maps describing the entire Gene Ontology assembled using data from GO", "hasLICENSE": false, "importsMe": [ "adSplit", "ChIPpeakAnno", "clusterProfiler", "ExpressionView", "GOFunction", "GOSemSim", "GOstats", "goTools", "PCpheno", "safe", "ScISI", "SLGI" ], "win.binary.ver": "bin/windows/contrib/2.16/GO.db_2.8.0.zip" }, "illuminaMousev2.db": { "organism": "Mus musculus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.37)", "org.Mm.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/illuminaMousev2.db_1.16.1.tgz", "Version": "1.16.1", "hasINSTALL": false, "MD5sum": "455a28bb5128dc0421a9a5ae86afebe8", "Maintainer": "Mark Dunning ", "Author": "Mark Dunning, Andy Lynch, Matthew Eldridge", "Title": "Illumina MouseWG6v2 annotation data (chip illuminaMousev2)", "source.ver": "src/contrib/illuminaMousev2.db_1.16.1.tar.gz", "Imports": [ "methods", "AnnotationDbi", "AnnotationForge" ], "NeedsCompilation": "no", "manufacturer": "Illumina", "Suggests": [ "annotate", "RUnit" ], "Package": "illuminaMousev2.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "ChipDb", "IlluminaChip", "Mus_musculus", "illuminaMousev2" ], "Description": "Illumina MouseWG6v2 annotation data (chip illuminaMousev2) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/illuminaMousev2.db_1.16.1.zip" }, "gahgu95eprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.5.24)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/gahgu95eprobe_2.2.0.tgz", "Version": "2.2.0", "hasINSTALL": false, "MD5sum": "06d5151572aca698fcdfe9e818b587c8", "Maintainer": "Francesco Ferrari", "Author": "Francesco Ferrari, Stefania Bortoluzzi, Alessandro Coppe, Alexandra Sirota, Marilyn Safran, Michael Shmoish, Sergio Ferrari, Doron Lancet, Gian Antonio Danieli and Silvio Bicciato.", "Title": "Probe sequence data for microarrays of type gahgu95e", "source.ver": "src/contrib/gahgu95eprobe_2.2.0.tar.gz", "NeedsCompilation": "no", "Package": "gahgu95eprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "GACustomCDF", "Homo_sapiens", "gahgu95e" ], "Description": "This package was automatically created by package AnnotationDbi version 1.5.24. The probe sequence data was obtained from http://www.affymetrix.com.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/gahgu95eprobe_2.2.0.zip" }, "hgu133a2probe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hgu133a2probe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "97c0e9d6f4e19d35217ad59e4056693e", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type hgu133a2", "source.ver": "src/contrib/hgu133a2probe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "hgu133a2probe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "hgu133a2", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG-U133A\\_2\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hgu133a2probe_2.11.0.zip" }, "humanomniexpress12v1bCrlmm": { "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/humanomniexpress12v1bCrlmm_1.0.1.tgz", "Version": "1.0.1", "hasINSTALL": false, "MD5sum": "abdb730fc230db669e588e024ee7624b", "Maintainer": "Matthew Ritchie ", "Author": "Rafael A Irizarry", "Title": "Metadata for fast genotyping with the 'crlmm' package", "source.ver": "src/contrib/humanomniexpress12v1bCrlmm_1.0.1.tar.gz", "Imports": [ "utils" ], "NeedsCompilation": "no", "Package": "humanomniexpress12v1bCrlmm", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Package with metadata for genotyping Illumina Omni Express 12 arrays using the 'crlmm' package.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/humanomniexpress12v1bCrlmm_1.0.1.zip" }, "BSgenome.Ptroglodytes.UCSC.panTro2": { "organism": "Pan troglodytes", "Depends": [ "BSgenome (>= 1.19.2)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/BSgenome.Ptroglodytes.UCSC.panTro2_1.3.17.tgz", "Version": "1.3.17", "hasINSTALL": false, "MD5sum": "445d269c3c06f06258640b000522903d", "Maintainer": "Biocore Team c/o BioC user list ", "Author": "H. Pages", "Title": "Pan troglodytes (Chimp) full genome (UCSC version panTro2)", "source.ver": "src/contrib/BSgenome.Ptroglodytes.UCSC.panTro2_1.3.17.tar.gz", "Imports": [ "BSgenome" ], "NeedsCompilation": "no", "Package": "BSgenome.Ptroglodytes.UCSC.panTro2", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Genetics", "Pan_troglodytes" ], "Description": "Pan troglodytes (Chimp) full genome as provided by UCSC (panTro2, Mar. 2006) and stored in Biostrings objects.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/BSgenome.Ptroglodytes.UCSC.panTro2_1.3.17.zip" }, "zebrafish.db": { "organism": "Danio rerio", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.20.2)", "org.Dr.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/zebrafish.db_2.8.1.tgz", "Version": "2.8.1", "hasINSTALL": false, "MD5sum": "eb30d0303aa15097ad0b58a1b73895a2", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Affymetrix zebrafish annotation data (chip zebrafish)", "source.ver": "src/contrib/zebrafish.db_2.8.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate", "RUnit" ], "Package": "zebrafish.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Danio_rerio", "zebrafish" ], "Description": "Affymetrix zebrafish annotation data (chip zebrafish) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/zebrafish.db_2.8.1.zip" }, "TxDb.Hsapiens.UCSC.hg18.knownGene": { "organism": "Homo sapiens", "Depends": [ "GenomicFeatures (>= 1.9.39)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/TxDb.Hsapiens.UCSC.hg18.knownGene_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "032dad1bcc7f3408885718ec860555c1", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Annotation package for TranscriptDb object(s)", "suggestsMe": [ "GenomicFeatures", "ind1KG" ], "source.ver": "src/contrib/TxDb.Hsapiens.UCSC.hg18.knownGene_2.8.0.tar.gz", "Imports": [ "GenomicFeatures", "AnnotationDbi" ], "NeedsCompilation": "no", "Package": "TxDb.Hsapiens.UCSC.hg18.knownGene", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Genetics", "Homo_sapiens", "TranscriptDb" ], "Description": "Exposes an annotation databases generated from UCSC by exposing these as TranscriptDb objects", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/TxDb.Hsapiens.UCSC.hg18.knownGene_2.8.0.zip" }, "ri16cod.db": { "organism": "Rattus norvegicus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.40)", "org.Hs.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/ri16cod.db_2.14.0.tgz", "Version": "2.14.0", "hasINSTALL": false, "MD5sum": "c44c8be43475eca0431c1af32b3a4dc9", "Maintainer": "Diego Diez ", "Author": "Diego Diez", "Title": "GE CodeLink Rat Inflammation 16 Bioarray annotation data (chip ri16cod)", "source.ver": "src/contrib/ri16cod.db_2.14.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "GE", "Suggests": [ "annotate", "RUnit" ], "Package": "ri16cod.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "ChipDb", "GEChip", "Rattus_norvegicus", "ri16cod" ], "Description": "GE CodeLink Rat Inflammation 16 Bioarray annotation data (chip ri16cod) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/ri16cod.db_2.14.0.zip" }, "pd.mg.u74bv2": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.mg.u74bv2_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "88e2c079744df13fdc45236a16fa89a2", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name MG_U74Bv2", "source.ver": "src/contrib/pd.mg.u74bv2_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.mg.u74bv2", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name MG_U74Bv2", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.mg.u74bv2_1.8.0.zip" }, "pd.hugene.1.0.st.v1": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.hugene.1.0.st.v1_3.8.0.tgz", "Version": "3.8.0", "hasINSTALL": false, "MD5sum": "37f730edfbfd861440c4fa39d948341e", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for Affymetrix HuGene-1_0-st-v1", "suggestsMe": [ "frmaTools", "oligo", "oligoData" ], "source.ver": "src/contrib/pd.hugene.1.0.st.v1_3.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.hugene.1.0.st.v1", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for Affymetrix HuGene-1_0-st-v1", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.hugene.1.0.st.v1_3.8.0.zip" }, "pd.canine": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.canine_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "a8ec3527579087823a970e7a7e9246b1", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name Canine", "source.ver": "src/contrib/pd.canine_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.canine", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name Canine", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.canine_1.8.0.zip" }, "pd.2006.07.18.mm8.refseq.promoter": { "Depends": [ "R (>= 2.11.0)", "methods", "RSQLite (>= 0.7-1)", "oligoClasses (>= 1.9.30)", "oligo (>= 1.11.18)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.2006.07.18.mm8.refseq.promoter_0.99.2.tgz", "Version": "0.99.2", "hasINSTALL": false, "MD5sum": "3f87eaddc7e988ee9e7a5cbdb9311b69", "Maintainer": "Martin Aryee ", "Author": "Martin Aryee", "Title": "Platform Design Info for NimbleGen 2006-07-18_mm8_refseq_promoter", "source.ver": "src/contrib/pd.2006.07.18.mm8.refseq.promoter_0.99.2.tar.gz", "Imports": [ "Biostrings (>= 2.13.50)", "IRanges (>= 1.3.89)" ], "NeedsCompilation": "no", "Package": "pd.2006.07.18.mm8.refseq.promoter", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for NimbleGen 2006-07-18_mm8_refseq_promoter", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.2006.07.18.mm8.refseq.promoter_0.99.2.zip" }, "mu6500subccdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/mu6500subccdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "48ab0204cdecbe7e530300dfece26c77", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "mu6500subccdf", "source.ver": "src/contrib/mu6500subccdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "mu6500subccdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "cdf", "mu6500subc" ], "Description": "A package containing an environment representing the Mu6500subC.CDF file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/mu6500subccdf_2.11.0.zip" }, "hthgu133acdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hthgu133acdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "87d765c5645399fcc8738891c1de0cc3", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "hthgu133acdf", "source.ver": "src/contrib/hthgu133acdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "hthgu133acdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "hthgu133a" ], "Description": "A package containing an environment representing the HT_HG-U133A.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hthgu133acdf_2.11.0.zip" }, "BSgenome.Ptroglodytes.UCSC.panTro3": { "organism": "Pan troglodytes", "Depends": [ "BSgenome (>= 1.25.1)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/BSgenome.Ptroglodytes.UCSC.panTro3_1.3.17.tgz", "Version": "1.3.17", "hasINSTALL": false, "MD5sum": "8d9fa02efb627dbdb5e4c1ee1ba919fa", "Maintainer": "Bioconductor Package Maintainer ", "Author": "The Bioconductor Dev Team", "Title": "Pan troglodytes (Chimp) full genome (UCSC version panTro3)", "source.ver": "src/contrib/BSgenome.Ptroglodytes.UCSC.panTro3_1.3.17.tar.gz", "Imports": [ "BSgenome" ], "NeedsCompilation": "no", "Package": "BSgenome.Ptroglodytes.UCSC.panTro3", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Genetics", "Pan_troglodytes" ], "Description": "Pan troglodytes (Chimp) full genome as provided by UCSC (panTro3, Oct. 2010) and stored in Biostrings objects.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/BSgenome.Ptroglodytes.UCSC.panTro3_1.3.17.zip" }, "rae230bprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/rae230bprobe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "690c092f52d9fee3af5c9bed2da7261e", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type rae230b", "source.ver": "src/contrib/rae230bprobe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "rae230bprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Rattus_norvegicus", "probe", "rae230b" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was RAE230B\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/rae230bprobe_2.11.0.zip" }, "pd.mapping250k.sty": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.mapping250k.sty_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "bf254747047176b61847db9636d0ebe0", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for Affymetrix Mapping250K_Sty", "suggestsMe": [ "cn.farms", "ITALICS", "oligoClasses" ], "source.ver": "src/contrib/pd.mapping250k.sty_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.mapping250k.sty", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for Affymetrix Mapping250K_Sty", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.mapping250k.sty_1.8.0.zip" }, "pd.cotton": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.cotton_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "c9766cbe8ed1211e6978a46c383b8b67", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name Cotton", "source.ver": "src/contrib/pd.cotton_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.cotton", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name Cotton", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.cotton_1.8.0.zip" }, "drosophila2cdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/drosophila2cdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "1048691aca47dadbc0393abf17d40fe2", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "drosophila2cdf", "source.ver": "src/contrib/drosophila2cdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "drosophila2cdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Drosophila_melanogaster", "cdf", "drosophila2" ], "Description": "A package containing an environment representing the Drosophila_2.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/drosophila2cdf_2.11.0.zip" }, "gahgu95dprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.5.24)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/gahgu95dprobe_2.2.0.tgz", "Version": "2.2.0", "hasINSTALL": false, "MD5sum": "44779d98ae1d0d6bfa2fd7c99a549611", "Maintainer": "Francesco Ferrari", "Author": "Francesco Ferrari, Stefania Bortoluzzi, Alessandro Coppe, Alexandra Sirota, Marilyn Safran, Michael Shmoish, Sergio Ferrari, Doron Lancet, Gian Antonio Danieli and Silvio Bicciato.", "Title": "Probe sequence data for microarrays of type gahgu95d", "source.ver": "src/contrib/gahgu95dprobe_2.2.0.tar.gz", "NeedsCompilation": "no", "Package": "gahgu95dprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "GACustomCDF", "Homo_sapiens", "gahgu95d" ], "Description": "This package was automatically created by package AnnotationDbi version 1.5.24. The probe sequence data was obtained from http://www.affymetrix.com.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/gahgu95dprobe_2.2.0.zip" }, "mu11ksubaprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/mu11ksubaprobe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "80ec20d90a959a3d75791b5d171d5264", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type mu11ksuba", "source.ver": "src/contrib/mu11ksubaprobe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "mu11ksubaprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "mu11ksuba", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Mu11KsubA\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/mu11ksubaprobe_2.11.0.zip" }, "BSgenome.Hsapiens.UCSC.hg17": { "organism": "Homo sapiens", "Depends": [ "BSgenome (>= 1.19.2)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/BSgenome.Hsapiens.UCSC.hg17_1.3.17.tgz", "Version": "1.3.17", "hasINSTALL": false, "MD5sum": "ff49feb14ecf95799b6e9bce9a9d50e3", "Maintainer": "Biocore Team c/o BioC user list ", "Author": "H. Pages", "Title": "Homo sapiens (Human) full genome (UCSC version hg17)", "source.ver": "src/contrib/BSgenome.Hsapiens.UCSC.hg17_1.3.17.tar.gz", "Imports": [ "BSgenome" ], "NeedsCompilation": "no", "Package": "BSgenome.Hsapiens.UCSC.hg17", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Genetics", "Homo_sapiens" ], "Description": "Homo sapiens (Human) full genome as provided by UCSC (hg17, May 2004) and stored in Biostrings objects.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/BSgenome.Hsapiens.UCSC.hg17_1.3.17.zip" }, "HuO22.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)", "org.Hs.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/HuO22.db_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "90d8d3c63fd2dc08fc11142cf82ee303", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "FHCRC Genomics Shared Resource HuO22 Annotation Data (HuO22)", "source.ver": "src/contrib/HuO22.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "FHCRC Genomics Shared Resource", "Suggests": [ "annotate", "RUnit" ], "Package": "HuO22.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "ChipDb", "FHCRC Genomics Shared ResourceChip", "Homo_sapiens", "HuO22" ], "Description": "FHCRC Genomics Shared Resource HuO22 Annotation Data (HuO22) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/HuO22.db_2.8.0.zip" }, "xenopuslaevisprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/xenopuslaevisprobe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "0fcb4496de77a403f788f755681c9ec1", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type xenopuslaevis", "source.ver": "src/contrib/xenopuslaevisprobe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "xenopuslaevisprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Xenopus_tropicalis", "probe", "xenopuslaevis" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Xenopus\\_laevis\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/xenopuslaevisprobe_2.11.0.zip" }, "TxDb.Scerevisiae.UCSC.sacCer2.sgdGene": { "organism": "Saccharomyces cerevisiae", "Depends": [ "GenomicFeatures (>= 1.9.39)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/TxDb.Scerevisiae.UCSC.sacCer2.sgdGene_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "137d837cc88ba6f7c2acbaf274dc063b", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Annotation package for TranscriptDb object(s)", "source.ver": "src/contrib/TxDb.Scerevisiae.UCSC.sacCer2.sgdGene_2.8.0.tar.gz", "Imports": [ "GenomicFeatures", "AnnotationDbi" ], "NeedsCompilation": "no", "Package": "TxDb.Scerevisiae.UCSC.sacCer2.sgdGene", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Genetics", "Saccharomyces_cerevisiae", "TranscriptDb" ], "Description": "Exposes an annotation databases generated from UCSC by exposing these as TranscriptDb objects", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/TxDb.Scerevisiae.UCSC.sacCer2.sgdGene_2.8.0.zip" }, "PFAM.db": { "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/PFAM.db_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "dd94d4138e16ab591d20f53f3a64c24c", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson, Ting-Yuan Liu, ChenWei Lin, Seth Falcon, Jianhua Zhang, James W. MacDonald", "Title": "A set of protein ID mappings for PFAM", "source.ver": "src/contrib/PFAM.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "Package": "PFAM.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "A set of protein ID mappings for PFAM assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/PFAM.db_2.8.0.zip" }, "pd.mapping250k.nsp": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.mapping250k.nsp_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "9d3ba656fb637d4a83c0614a62ecf438", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for Affymetrix Mapping250K_Nsp", "suggestsMe": [ "cn.farms", "ITALICS", "oligoClasses" ], "source.ver": "src/contrib/pd.mapping250k.nsp_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.mapping250k.nsp", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for Affymetrix Mapping250K_Nsp", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.mapping250k.nsp_1.8.0.zip" }, "BSgenome.Hsapiens.UCSC.hg18": { "organism": "Homo sapiens", "Depends": [ "BSgenome (>= 1.25.4)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/BSgenome.Hsapiens.UCSC.hg18_1.3.19.tgz", "Version": "1.3.19", "hasINSTALL": false, "MD5sum": "878c8dc5b3829a2138755ab0711ebd3c", "Maintainer": "Bioconductor Package Maintainer ", "Author": "The Bioconductor Dev Team", "Title": "Homo sapiens (Human) full genome (UCSC version hg18)", "suggestsMe": [ "Biostrings", "charm", "GenomicFeatures", "MEDME", "Repitools", "rGADEM", "SNPlocs.Hsapiens.dbSNP.20090506" ], "source.ver": "src/contrib/BSgenome.Hsapiens.UCSC.hg18_1.3.19.tar.gz", "Imports": [ "BSgenome" ], "NeedsCompilation": "no", "Package": "BSgenome.Hsapiens.UCSC.hg18", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Genetics", "Homo_sapiens" ], "Description": "Homo sapiens (Human) full genome as provided by UCSC (hg18, Mar. 2006) and stored in Biostrings objects.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/BSgenome.Hsapiens.UCSC.hg18_1.3.19.zip" }, "htrat230pmcdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/htrat230pmcdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "32e0cb4100749553e952a7f8133aaf12", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "htrat230pmcdf", "source.ver": "src/contrib/htrat230pmcdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "htrat230pmcdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Rattus_norvegicus", "cdf", "htrat230pm" ], "Description": "A package containing an environment representing the HT_Rat230_PM.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/htrat230pmcdf_2.11.0.zip" }, "ecoliasv2probe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/ecoliasv2probe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "9a7ee1051a4deee7bb33ba1cf10b157d", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type ecoliasv2", "source.ver": "src/contrib/ecoliasv2probe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "ecoliasv2probe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Escherichia_coli", "ecoliasv2", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was E\\_coli\\_Asv2\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/ecoliasv2probe_2.11.0.zip" }, "hwgcod.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.40)", "org.Hs.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hwgcod.db_2.14.0.tgz", "Version": "2.14.0", "hasINSTALL": false, "MD5sum": "496c853d3480f55573c30d5e68330ecc", "Maintainer": "Diego Diez ", "Author": "Diego Diez", "Title": "GE CodeLink Human Whole Genome Bioarray (~55 000 human genes) annotation data (chip hwgcod)", "source.ver": "src/contrib/hwgcod.db_2.14.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "GE", "Suggests": [ "annotate", "RUnit" ], "Package": "hwgcod.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "ChipDb", "GEChip", "Homo_sapiens", "hwgcod" ], "Description": "GE CodeLink Human Whole Genome Bioarray (~55 000 human genes) annotation data (chip hwgcod) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hwgcod.db_2.14.0.zip" }, "ragene10stv1cdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/ragene10stv1cdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "704f08baac33607529e9fd3a26724f38", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "ragene10stv1cdf", "source.ver": "src/contrib/ragene10stv1cdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "ragene10stv1cdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Rattus_norvegicus", "cdf", "ragene10stv1" ], "Description": "A package containing an environment representing the RaGene-1_0-st-v1.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/ragene10stv1cdf_2.11.0.zip" }, "rae230acdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/rae230acdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "e9026d9e57b8d2c06eddf37cd58e8c09", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "rae230acdf", "source.ver": "src/contrib/rae230acdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "rae230acdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Rattus_norvegicus", "cdf", "rae230a" ], "Description": "A package containing an environment representing the RAE230A.CDF file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/rae230acdf_2.11.0.zip" }, "pedbarrayv9.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)", "org.Hs.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pedbarrayv9.db_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "126d0d21a75571dba69d813372c5903d", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "FHCRC Nelson Lab pedbarrayv9 Annotation Data (pedbarrayv9)", "source.ver": "src/contrib/pedbarrayv9.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "FHCRC Nelson Lab", "Suggests": [ "annotate", "RUnit" ], "Package": "pedbarrayv9.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "ChipDb", "FHCRC Nelson LabChip", "Homo_sapiens", "pedbarrayv9" ], "Description": "FHCRC Nelson Lab pedbarrayv9 Annotation Data (pedbarrayv9) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pedbarrayv9.db_2.8.0.zip" }, "pd.medicago": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.medicago_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "ea86eec45db68706ef18709215e0ac29", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name Medicago", "source.ver": "src/contrib/pd.medicago_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.medicago", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name Medicago", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.medicago_1.8.0.zip" }, "pd.chicken": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.chicken_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "c13292eddc622f423fb1862ba76a10f6", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name Chicken", "source.ver": "src/contrib/pd.chicken_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.chicken", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name Chicken", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.chicken_1.8.0.zip" }, "BSgenome.Hsapiens.UCSC.hg19": { "organism": "Homo sapiens", "Depends": [ "BSgenome (>= 1.25.4)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/BSgenome.Hsapiens.UCSC.hg19_1.3.19.tgz", "Version": "1.3.19", "hasINSTALL": false, "MD5sum": "d8cc70ba24b9c320ca45c3dc56f5f9b2", "Maintainer": "Bioconductor Package Maintainer ", "Author": "The Bioconductor Dev Team", "Title": "Homo sapiens (Human) full genome (UCSC version hg19)", "suggestsMe": [ "biovizBase", "BSgenome", "FDb.FANTOM4.promoters.hg19", "FDb.InfiniumMethylation.hg19", "FDb.UCSC.snp135common.hg19", "GenomicFeatures", "ggbio", "gmapR", "Gviz", "MEDIPS", "MiRaGE", "oneChannelGUI", "R453Plus1Toolbox", "RSVSim", "rtracklayer", "SNPlocs.Hsapiens.dbSNP.20100427", "SNPlocs.Hsapiens.dbSNP.20101109", "SNPlocs.Hsapiens.dbSNP.20110815", "SNPlocs.Hsapiens.dbSNP.20111119", "SNPlocs.Hsapiens.dbSNP.20120608", "VariantAnnotation" ], "source.ver": "src/contrib/BSgenome.Hsapiens.UCSC.hg19_1.3.19.tar.gz", "Imports": [ "BSgenome" ], "NeedsCompilation": "no", "Package": "BSgenome.Hsapiens.UCSC.hg19", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Genetics", "Homo_sapiens" ], "Description": "Homo sapiens (Human) full genome as provided by UCSC (hg19, Feb. 2009) and stored in Biostrings objects.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/BSgenome.Hsapiens.UCSC.hg19_1.3.19.zip" }, "anopheles.db0": { "organism": "Anopheles gambiae", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.7.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/anopheles.db0_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "59934bfb5ce87362b1f63fe2c4057c16", "Maintainer": "Biocore Team c/o BioC user list ", "Author": "Marc Carlson, Herve Pages", "Title": "Base Level Annotation databases for anopheles", "source.ver": "src/contrib/anopheles.db0_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "Package": "anopheles.db0", "License": "The Artistic License, Version 2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Anopheles_gambiae", "db0" ], "Description": "Base annotation databases for anopheles, intended ONLY to be used by AnnotationDbi to produce regular annotation packages.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/anopheles.db0_2.8.0.zip" }, "hapmap370k": { "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hapmap370k_1.0.1.tgz", "Version": "1.0.1", "hasINSTALL": false, "MD5sum": "569556341a45da799372aaf1012be72e", "Maintainer": "Matthew Ritchie ", "Author": "Matthew Ritchie ", "Title": "Example Illumina 370k HapMap Data", "suggestsMe": [ "illuminaio" ], "source.ver": "src/contrib/hapmap370k_1.0.1.tar.gz", "NeedsCompilation": "no", "Suggests": [ "crlmm" ], "Package": "hapmap370k", "License": "GPL", "hasREADME": false, "biocViews": [ "AnnotationData", "ExperimentData" ], "Description": "Example HapMap data from Illumina 370k BeadChips", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hapmap370k_1.0.1.zip" }, "IlluminaHumanMethylation450k.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.12.0)", "org.Hs.eg.db (>= 2.4.6)" ], "vignetteTitles": [ "Using 450k annotations for 27k chips" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/IlluminaHumanMethylation450k.db_1.4.7.tgz", "Version": "1.4.7", "dependsOnMe": [ "wateRmelon" ], "hasINSTALL": false, "MD5sum": "62c11bc75f9fc3bdef983fedf8d6af98", "Maintainer": "Tim Triche, Jr. ", "Author": "Tim Triche, Jr. ", "Title": "Illumina Human Methylation 450k annotation data", "suggestsMe": [ "methylumi" ], "source.ver": "src/contrib/IlluminaHumanMethylation450k.db_1.4.7.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Illumina", "Suggests": [ "annotate", "methylumi" ], "Package": "IlluminaHumanMethylation450k.db", "vignettes": [ "vignettes/IlluminaHumanMethylation450k.db/inst/doc/hm27kOn450k.pdf" ], "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "DNAMethylation", "Homo_sapiens", "IlluminaChip" ], "Description": "Illumina Human Methylation 450k annotation data (chip IlluminaHumanMethylation450k) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/IlluminaHumanMethylation450k.db_1.4.7.zip" }, "hugene10stv1cdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hugene10stv1cdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "c9ba890b1c75a44e6118f8f73e76ee58", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "hugene10stv1cdf", "source.ver": "src/contrib/hugene10stv1cdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "hugene10stv1cdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "hugene10stv1" ], "Description": "A package containing an environment representing the HuGene-1_0-st-v1.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hugene10stv1cdf_2.11.0.zip" }, "gahgu95av2cdf": { "Depends": [ "utils" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/gahgu95av2cdf_2.2.0.tgz", "Version": "2.2.0", "hasINSTALL": false, "MD5sum": "9ddd03af01433f7a282dd170dec9f24a", "Maintainer": "Francesco Ferrari ", "Author": "Francesco Ferrari, Stefania Bortoluzzi, Alessandro Coppe, Alexandra Sirota, Marilyn Safran, Michael Shmoish, Sergio Ferrari, Doron Lancet, Gian Antonio Danieli and Silvio Bicciato", "Title": "gahgu95av2cdf", "source.ver": "src/contrib/gahgu95av2cdf_2.2.0.tar.gz", "NeedsCompilation": "no", "Package": "gahgu95av2cdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "GACustomCDF", "Homo Sapiens", "gahgu95av2" ], "Description": "A package containing an environment representing the gahgu95av2.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/gahgu95av2cdf_2.2.0.zip" }, "mirna20cdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/mirna20cdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "e49e980428aaacd7b8dc96f520e22f2a", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "mirna20cdf", "source.ver": "src/contrib/mirna20cdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "mirna20cdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "mirna20" ], "Description": "A package containing an environment representing the miRNA-2_0.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/mirna20cdf_2.11.0.zip" }, "illuminaHumanv1.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.37)", "org.Hs.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/illuminaHumanv1.db_1.16.0.tgz", "Version": "1.16.0", "dependsOnMe": [ "GGdata" ], "hasINSTALL": false, "MD5sum": "510aa78e1537507d159932f0fe08438e", "Maintainer": "Mark Dunning ", "Author": "Mark Dunning, Andy Lynch, Matthew Eldridge", "Title": "Illumina HumanWG6v1 annotation data (chip illuminaHumanv1)", "suggestsMe": [ "attract", "BeadArrayUseCases", "GGtools", "hmyriB36" ], "source.ver": "src/contrib/illuminaHumanv1.db_1.16.0.tar.gz", "Imports": [ "methods", "AnnotationDbi", "AnnotationForge" ], "NeedsCompilation": "no", "manufacturer": "Illumina", "Suggests": [ "annotate", "RUnit" ], "Package": "illuminaHumanv1.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "ChipDb", "Homo_sapiens", "IlluminaChip", "illuminaHumanv1" ], "Description": "Illumina HumanWG6v1 annotation data (chip illuminaHumanv1) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/illuminaHumanv1.db_1.16.0.zip" }, "Roberts2005Annotation.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)", "org.Hs.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/Roberts2005Annotation.db_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "c04a269f972bc4d28a65dc44e88220a1", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Roberts2005Annotation Annotation Data (Roberts2005Annotation)", "source.ver": "src/contrib/Roberts2005Annotation.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Roberts2005Annotation", "Suggests": [ "annotate", "RUnit" ], "Package": "Roberts2005Annotation.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "ChipDb", "Homo_sapiens", "Roberts2005Annotation", "Roberts2005AnnotationChip" ], "Description": "Roberts2005Annotation Annotation Data (Roberts2005Annotation) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/Roberts2005Annotation.db_2.8.0.zip" }, "pd.s.aureus": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.s.aureus_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "b3e473b289075ec91235f0f33379ca08", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name S_aureus", "source.ver": "src/contrib/pd.s.aureus_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.s.aureus", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name S_aureus", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.s.aureus_1.8.0.zip" }, "pd.raex.1.0.st.v1": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.raex.1.0.st.v1_3.8.0.tgz", "Version": "3.8.0", "hasINSTALL": false, "MD5sum": "08e1f76f5a6cde5f06d7502324659fd5", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for Affymetrix RaEx-1_0-st-v1", "source.ver": "src/contrib/pd.raex.1.0.st.v1_3.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.raex.1.0.st.v1", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for Affymetrix RaEx-1_0-st-v1", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.raex.1.0.st.v1_3.8.0.zip" }, "mu11ksubbprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/mu11ksubbprobe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "c4a8bdcb3b25ea449a60b011895e6dfe", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type mu11ksubb", "source.ver": "src/contrib/mu11ksubbprobe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "mu11ksubbprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "mu11ksubb", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Mu11KsubB\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/mu11ksubbprobe_2.11.0.zip" }, "hgu133b.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)", "org.Hs.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hgu133b.db_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "9a9011231996d212ffcef2ec2c3a4f59", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Affymetrix Human Genome U133 Set annotation data (chip hgu133b)", "source.ver": "src/contrib/hgu133b.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate", "RUnit" ], "Package": "hgu133b.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Homo_sapiens", "hgu133b" ], "Description": "Affymetrix Human Genome U133 Set annotation data (chip hgu133b) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hgu133b.db_2.8.0.zip" }, "pd.cyrgene.1.0.st": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.cyrgene.1.0.st_3.8.0.tgz", "Version": "3.8.0", "hasINSTALL": false, "MD5sum": "b46fe8ac4967daf6690ae01420b6c9be", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for Affymetrix CyRGene-1_0-st", "source.ver": "src/contrib/pd.cyrgene.1.0.st_3.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.cyrgene.1.0.st", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for Affymetrix CyRGene-1_0-st", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.cyrgene.1.0.st_3.8.0.zip" }, "hu6800subdcdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hu6800subdcdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "527072a1e67c3768da4869b70b8755fe", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "hu6800subdcdf", "source.ver": "src/contrib/hu6800subdcdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "hu6800subdcdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "hu6800subd" ], "Description": "A package containing an environment representing the Hu6800subD.CDF file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hu6800subdcdf_2.11.0.zip" }, "pd.huex.1.0.st.v2": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.huex.1.0.st.v2_3.8.0.tgz", "Version": "3.8.0", "hasINSTALL": false, "MD5sum": "8388f9c0e24550590e32fc166ddd341f", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for Affymetrix HuEx-1_0-st-v2", "suggestsMe": [ "frmaTools", "oligo", "oligoData" ], "source.ver": "src/contrib/pd.huex.1.0.st.v2_3.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.huex.1.0.st.v2", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for Affymetrix HuEx-1_0-st-v2", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.huex.1.0.st.v2_3.8.0.zip" }, "gahgu95c.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.5.24)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/gahgu95c.db_2.2.0.tgz", "Version": "2.2.0", "hasINSTALL": false, "MD5sum": "f31d4b7deeee6568fa766cff0cfec705", "Maintainer": "Francesco Ferrari ", "Author": "Francesco Ferrari, Stefania Bortoluzzi, Alessandro Coppe, Alexandra Sirota, Marilyn Safran, Michael Shmoish, Sergio Ferrari, Doron Lancet, Gian Antonio Danieli and Silvio Bicciato", "Title": "Genecards derived annotations for gahgu95c custom probeset definitions", "source.ver": "src/contrib/gahgu95c.db_2.2.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Package": "gahgu95c.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "GeneCardsCustomSchema" ], "Description": "Genecards derived annotations for gahgu95c custom probeset definitions assembled using data from the GeneCards database (www.genecards.org)", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/gahgu95c.db_2.2.0.zip" }, "paeg1acdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/paeg1acdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "b6fd7f364d35e416013948e28242beaf", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "paeg1acdf", "source.ver": "src/contrib/paeg1acdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "paeg1acdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Pseudomonas_aeruginosa", "cdf", "paeg1a" ], "Description": "A package containing an environment representing the Pae_G1a.CDF file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/paeg1acdf_2.11.0.zip" }, "pd.porcine": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.porcine_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "d5cffb9062b6a06129867ef11dd8dfb5", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name Porcine", "source.ver": "src/contrib/pd.porcine_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.porcine", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name Porcine", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.porcine_1.8.0.zip" }, "pd.canine.2": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.canine.2_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "39ec7bff980cfe53dd5338bb535616ec", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name Canine_2", "source.ver": "src/contrib/pd.canine.2_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.canine.2", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name Canine_2", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.canine.2_1.8.0.zip" }, "hivprtplus2cdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hivprtplus2cdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "96610b8dcb0e0ef8ea55a3f2f69a7456", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "hivprtplus2cdf", "source.ver": "src/contrib/hivprtplus2cdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "hivprtplus2cdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "hivprtplus2" ], "Description": "A package containing an environment representing the HIV PRTPlus 2.CDF file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hivprtplus2cdf_2.11.0.zip" }, "TxDb.Mmusculus.UCSC.mm10.ensGene": { "organism": "Mus musculus", "Depends": [ "GenomicFeatures (>= 1.9.39)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/TxDb.Mmusculus.UCSC.mm10.ensGene_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "07597b5eae135a622f6ca9e21d6a3cda", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Annotation package for TranscriptDb object(s)", "source.ver": "src/contrib/TxDb.Mmusculus.UCSC.mm10.ensGene_2.8.0.tar.gz", "Imports": [ "GenomicFeatures", "AnnotationDbi" ], "NeedsCompilation": "no", "Package": "TxDb.Mmusculus.UCSC.mm10.ensGene", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Genetics", "Mus_musculus", "TranscriptDb" ], "Description": "Exposes an annotation databases generated from UCSC by exposing these as TranscriptDb objects", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/TxDb.Mmusculus.UCSC.mm10.ensGene_2.8.0.zip" }, "mouse4302cdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/mouse4302cdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "141da927ac0c293f6166013f71aab1f7", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "mouse4302cdf", "suggestsMe": [ "ChIPXpress" ], "source.ver": "src/contrib/mouse4302cdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "mouse4302cdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "cdf", "mouse4302" ], "Description": "A package containing an environment representing the Mouse430_2.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/mouse4302cdf_2.11.0.zip" }, "gahgu95av2probe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.5.24)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/gahgu95av2probe_2.2.0.tgz", "Version": "2.2.0", "hasINSTALL": false, "MD5sum": "a649eb1a586d7aa74e688656ad1f8909", "Maintainer": "Francesco Ferrari", "Author": "Francesco Ferrari, Stefania Bortoluzzi, Alessandro Coppe, Alexandra Sirota, Marilyn Safran, Michael Shmoish, Sergio Ferrari, Doron Lancet, Gian Antonio Danieli and Silvio Bicciato.", "Title": "Probe sequence data for microarrays of type gahgu95av2", "source.ver": "src/contrib/gahgu95av2probe_2.2.0.tar.gz", "NeedsCompilation": "no", "Package": "gahgu95av2probe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "GACustomCDF", "Homo_sapiens", "gahgu95av2" ], "Description": "This package was automatically created by package AnnotationDbi version 1.5.24. The probe sequence data was obtained from http://www.affymetrix.com.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/gahgu95av2probe_2.2.0.zip" }, "yeast.db0": { "organism": "Saccharomyces cerevisiae", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.1.15)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/yeast.db0_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "9b19083e5d4965cbbd79eeb5565614af", "Maintainer": "Biocore Team c/o BioC user list ", "Author": "Marc Carlson, Nianhua Li, Herve Pages", "Title": "Base Level Annotation databases for yeast", "source.ver": "src/contrib/yeast.db0_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "Package": "yeast.db0", "License": "The Artistic License, Version 2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Saccharomyces_cerevisiae", "db0" ], "Description": "Base annotation databases for yeast, intended ONLY to be used by AnnotationDbi to produce regular annotation packages.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/yeast.db0_2.8.0.zip" }, "rnu34cdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/rnu34cdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "9950835ab212ca76a2942ac7b677f97b", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "rnu34cdf", "source.ver": "src/contrib/rnu34cdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "rnu34cdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Rattus_norvegicus", "cdf", "rnu34" ], "Description": "A package containing an environment representing the RN_U34.CDF file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/rnu34cdf_2.11.0.zip" }, "hu35ksubd.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)", "org.Hs.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hu35ksubd.db_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "02df69db8ab68aa09029b80c974064b1", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Affymetrix Human Genome HU35K Set annotation data (chip hu35ksubd)", "source.ver": "src/contrib/hu35ksubd.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate", "RUnit" ], "Package": "hu35ksubd.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Homo_sapiens", "hu35ksubd" ], "Description": "Affymetrix Human Genome HU35K Set annotation data (chip hu35ksubd) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hu35ksubd.db_2.8.0.zip" }, "moe430b.db": { "organism": "Mus musculus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.20.2)", "org.Mm.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/moe430b.db_2.8.1.tgz", "Version": "2.8.1", "hasINSTALL": false, "MD5sum": "c35f68f281147d46a3319c49fa3f77a9", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Affymetrix Mouse Expression Set 430 annotation data (chip moe430b)", "source.ver": "src/contrib/moe430b.db_2.8.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate", "RUnit" ], "Package": "moe430b.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Mus_musculus", "moe430b" ], "Description": "Affymetrix Mouse Expression Set 430 annotation data (chip moe430b) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/moe430b.db_2.8.1.zip" }, "xtropicaliscdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/xtropicaliscdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "9223944d062762af720c935e96f90c08", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "xtropicaliscdf", "source.ver": "src/contrib/xtropicaliscdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "xtropicaliscdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Xenopis_tropicalis", "cdf", "xtropicalis" ], "Description": "A package containing an environment representing the X_tropicalis.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/xtropicaliscdf_2.11.0.zip" }, "rtu34cdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/rtu34cdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "b72839c27e906cf4255e9ded01749d0c", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "rtu34cdf", "source.ver": "src/contrib/rtu34cdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "rtu34cdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Rattus_norvegicus", "cdf", "rtu34" ], "Description": "A package containing an environment representing the RT_U34.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/rtu34cdf_2.11.0.zip" }, "pd.bsubtilis": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.bsubtilis_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "ace65552d03f9734e3c018ab4da4f638", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name Bsubtilis", "source.ver": "src/contrib/pd.bsubtilis_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.bsubtilis", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name Bsubtilis", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.bsubtilis_1.8.0.zip" }, "medicagocdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/medicagocdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "98e01450e9102d559d5d06c593395698", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "medicagocdf", "source.ver": "src/contrib/medicagocdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "medicagocdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Medicago_trunculata", "cdf", "medicago" ], "Description": "A package containing an environment representing the Medicago.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/medicagocdf_2.11.0.zip" }, "htmg430aprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/htmg430aprobe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "32f21e88ac2f01ae94f782b8e5640d0b", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type htmg430a", "source.ver": "src/contrib/htmg430aprobe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "htmg430aprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "htmg430a", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HT\\_MG-430A\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/htmg430aprobe_2.11.0.zip" }, "hgug4101a.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)", "org.Hs.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hgug4101a.db_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "e7f9e3fe748a4413c45c60ca38d069c0", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Agilent Human 2 cDNA Microarry Kit annotation data (chip hgug4101a)", "source.ver": "src/contrib/hgug4101a.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Agilent", "Suggests": [ "annotate", "RUnit" ], "Package": "hgug4101a.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AgilentChip", "AnnotationData", "ChipDb", "Homo_sapiens", "hgug4101a" ], "Description": "Agilent Human 2 cDNA Microarry Kit annotation data (chip hgug4101a) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hgug4101a.db_2.8.0.zip" }, "hom.Ce.inp.db": { "organism": "Caenorhabditis_elegans", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hom.Ce.inp.db_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "f3a109440ad9ebade1f2a74336eb7be2", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson, Herve Pages", "Title": "Homology information for Caenorhabditis elegans from Inparanoid", "source.ver": "src/contrib/hom.Ce.inp.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "Package": "hom.Ce.inp.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Caenorhabditis_elegans", "InparanoidDb" ], "Description": "Homology information for Caenorhabditis elegans from Inparanoid assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hom.Ce.inp.db_2.8.0.zip" }, "hgu95eprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hgu95eprobe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "a52566fdc70932e0cb47356958654c20", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type hgu95e", "source.ver": "src/contrib/hgu95eprobe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "hgu95eprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "hgu95e", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG-U95E\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hgu95eprobe_2.11.0.zip" }, "drosgenome1cdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/drosgenome1cdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "ac3132a746e9f0afebc951ff999a4d10", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "drosgenome1cdf", "source.ver": "src/contrib/drosgenome1cdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "drosgenome1cdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Drosophila_melanogaster", "cdf", "drosgenome1" ], "Description": "A package containing an environment representing the DrosGenome1.CDF file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/drosgenome1cdf_2.11.0.zip" }, "poplarcdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/poplarcdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "1de1202d79f1db204b57f96319ca45ea", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "poplarcdf", "source.ver": "src/contrib/poplarcdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "poplarcdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Populus_sp", "cdf", "poplar" ], "Description": "A package containing an environment representing the Poplar.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/poplarcdf_2.11.0.zip" }, "pd.yeast.2": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.yeast.2_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "d2c5893ccd540b8c2d1c23e94437949c", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name Yeast_2", "source.ver": "src/contrib/pd.yeast.2_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.yeast.2", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name Yeast_2", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.yeast.2_1.8.0.zip" }, "pd.aragene.1.1.st": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.aragene.1.1.st_3.8.0.tgz", "Version": "3.8.0", "hasINSTALL": false, "MD5sum": "5cd13895d00811ab711a7328b0c50a0b", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for Affymetrix AraGene-1_1-st", "source.ver": "src/contrib/pd.aragene.1.1.st_3.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.aragene.1.1.st", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for Affymetrix AraGene-1_1-st", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.aragene.1.1.st_3.8.0.zip" }, "org.Dr.eg.db": { "organism": "Danio rerio", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/org.Dr.eg.db_2.8.0.tgz", "Version": "2.8.0", "dependsOnMe": [ "zebrafish.db" ], "hasINSTALL": false, "MD5sum": "3ca56650cce00c90b7a1b179cebd0637", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Genome wide annotation for Zebrafish", "source.ver": "src/contrib/org.Dr.eg.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "Suggests": [ "annotate", "RUnit" ], "Package": "org.Dr.eg.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Danio_rerio", "OrgDb" ], "Description": "Genome wide annotation for Zebrafish, primarily based on mapping using Entrez Gene identifiers.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/org.Dr.eg.db_2.8.0.zip" }, "org.Ss.eg.db": { "organism": "Sus scrofa", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/org.Ss.eg.db_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "16a858013a40c493bd92334c13e44ffe", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Genome wide annotation for Pig", "source.ver": "src/contrib/org.Ss.eg.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "Suggests": [ "annotate", "RUnit" ], "Package": "org.Ss.eg.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "OrgDb", "Sus_scrofa" ], "Description": "Genome wide annotation for Pig, primarily based on mapping using Entrez Gene identifiers.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/org.Ss.eg.db_2.8.0.zip" }, "OperonHumanV3.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)", "org.Hs.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/OperonHumanV3.db_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "3bac1310457c2d7a72f7d3f6d034507b", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "FHCRC Nelson Lab OperonHumanV3 Annotation Data (OperonHumanV3)", "source.ver": "src/contrib/OperonHumanV3.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "FHCRC Nelson Lab", "Suggests": [ "annotate", "RUnit" ], "Package": "OperonHumanV3.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "ChipDb", "FHCRC Nelson LabChip", "Homo_sapiens", "OperonHumanV3" ], "Description": "FHCRC Nelson Lab OperonHumanV3 Annotation Data (OperonHumanV3) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/OperonHumanV3.db_2.8.0.zip" }, "celegansprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/celegansprobe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "78cf35ccceab2c94262227403a40703c", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type celegans", "source.ver": "src/contrib/celegansprobe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "celegansprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Canis_familiaris", "celegans", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was C\\_elegans\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/celegansprobe_2.11.0.zip" }, "gahgu95dcdf": { "Depends": [ "utils" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/gahgu95dcdf_2.2.0.tgz", "Version": "2.2.0", "hasINSTALL": false, "MD5sum": "e6869630495a7d8a159033b7c091c21e", "Maintainer": "Francesco Ferrari ", "Author": "Francesco Ferrari, Stefania Bortoluzzi, Alessandro Coppe, Alexandra Sirota, Marilyn Safran, Michael Shmoish, Sergio Ferrari, Doron Lancet, Gian Antonio Danieli and Silvio Bicciato", "Title": "gahgu95dcdf", "source.ver": "src/contrib/gahgu95dcdf_2.2.0.tar.gz", "NeedsCompilation": "no", "Package": "gahgu95dcdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "GACustomCDF", "Homo Sapiens", "gahgu95d" ], "Description": "A package containing an environment representing the gahgu95d.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/gahgu95dcdf_2.2.0.zip" }, "mu19ksubbcdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/mu19ksubbcdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "218fcb40b8c81d02a589d5091597d005", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "mu19ksubbcdf", "source.ver": "src/contrib/mu19ksubbcdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "mu19ksubbcdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "cdf", "mu19ksubb" ], "Description": "A package containing an environment representing the Mu19KsubB.CDF file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/mu19ksubbcdf_2.11.0.zip" }, "SHDZ.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)", "org.Hs.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/SHDZ.db_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "80b91e4af8013e78c3f320657df03f82", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "SHDZ http://genome-www5.stanford.edu/ Annotation Data (SHDZ)", "source.ver": "src/contrib/SHDZ.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Stanford Microarray Database", "Suggests": [ "annotate", "RUnit" ], "Package": "SHDZ.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "ChipDb", "Homo_sapiens", "SHDZ", "Stanford Microarray DatabaseChip" ], "Description": "SHDZ http://genome-www5.stanford.edu/ Annotation Data (SHDZ) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/SHDZ.db_2.8.0.zip" }, "pd.cyngene.1.1.st": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.cyngene.1.1.st_3.8.0.tgz", "Version": "3.8.0", "hasINSTALL": false, "MD5sum": "e53e95009e587d7ebf78654179c33795", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for Affymetrix CynGene-1_1-st", "source.ver": "src/contrib/pd.cyngene.1.1.st_3.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.cyngene.1.1.st", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for Affymetrix CynGene-1_1-st", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.cyngene.1.1.st_3.8.0.zip" }, "org.EcSakai.eg.db": { "organism": "Escherichia coli", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/org.EcSakai.eg.db_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "821c212e3fc98f3760e47722918a4bdf", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Genome wide annotation for E coli strain Sakai", "source.ver": "src/contrib/org.EcSakai.eg.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "Suggests": [ "annotate", "RUnit" ], "Package": "org.EcSakai.eg.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Escherichia_coli", "OrgDb" ], "Description": "Genome wide annotation for E coli strain Sakai, primarily based on mapping using Entrez Gene identifiers.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/org.EcSakai.eg.db_2.8.0.zip" }, "RmiR.Hs.miRNA": { "Depends": [ "R (>= 2.7.0)" ], "vignetteTitles": [ "RmiRdb-fig1a.pdf", "RmiRdb-fig1b.pdf", "RmiRdb-fig2a.pdf", "RmiRdb-fig2b.pdf", "RmiR.Hs.miRNA Vignette", "Rplots.pdf" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/RmiR.Hs.miRNA_1.0.6.tgz", "Version": "1.0.6", "dependsOnMe": [ "RmiR" ], "hasINSTALL": false, "MD5sum": "9231c69f63d78011c911fe6c2c59c659", "Maintainer": "Francesco Favero ", "Author": "Francesco Favero", "Title": "Various databases of microRNA Targets", "suggestsMe": [ "oneChannelGUI" ], "source.ver": "src/contrib/RmiR.Hs.miRNA_1.0.6.tar.gz", "Imports": [ "AnnotationDbi" ], "NeedsCompilation": "no", "Suggests": [ "methods", "hgug4112a.db" ], "Package": "RmiR.Hs.miRNA", "vignettes": [ "vignettes/RmiR.Hs.miRNA/inst/doc/RmiRdb-fig1a.pdf", "vignettes/RmiR.Hs.miRNA/inst/doc/RmiRdb-fig1b.pdf", "vignettes/RmiR.Hs.miRNA/inst/doc/RmiRdb-fig2a.pdf", "vignettes/RmiR.Hs.miRNA/inst/doc/RmiRdb-fig2b.pdf", "vignettes/RmiR.Hs.miRNA/inst/doc/RmiR.Hs.miRNA.pdf", "vignettes/RmiR.Hs.miRNA/inst/doc/Rplots.pdf" ], "License": "The Artistic License, Version 2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "AnnotationData,Homo_sapiens,CustomDBSchema,miRNA" ], "Description": "Various databases of microRNA Targets", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/RmiR.Hs.miRNA_1.0.6.zip" }, "pd.vitis.vinifera": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.vitis.vinifera_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "e9d736ebba5c46365421233d0dd05724", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name Vitis_Vinifera", "source.ver": "src/contrib/pd.vitis.vinifera_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.vitis.vinifera", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name Vitis_Vinifera", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.vitis.vinifera_1.8.0.zip" }, "pd.pae.g1a": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.pae.g1a_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "5a233cd3287c08bec19ecc313229ea79", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name Pae_G1a", "source.ver": "src/contrib/pd.pae.g1a_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.pae.g1a", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name Pae_G1a", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.pae.g1a_1.8.0.zip" }, "hguDKFZ31.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)", "org.Hs.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hguDKFZ31.db_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "d65e99f0846717d1379ca58b15da4d8d", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Unknown annotation data (chip hguDKFZ31)", "source.ver": "src/contrib/hguDKFZ31.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Unknown", "Suggests": [ "annotate", "RUnit" ], "Package": "hguDKFZ31.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "ChipDb", "CustomArray", "Homo_sapiens" ], "Description": "Unknown annotation data (chip hguDKFZ31) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hguDKFZ31.db_2.8.0.zip" }, "human660quadv1aCrlmm": { "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/human660quadv1aCrlmm_1.0.3.tgz", "Version": "1.0.3", "hasINSTALL": false, "MD5sum": "5fd2d94a462e150c888f13c5c0975c36", "Maintainer": "Matthew Ritchie ", "Author": "Rafael A Irizarry", "Title": "Metadata for fast genotyping with the 'crlmm' package", "source.ver": "src/contrib/human660quadv1aCrlmm_1.0.3.tar.gz", "Imports": [ "utils" ], "NeedsCompilation": "no", "Package": "human660quadv1aCrlmm", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Package with metadata for genotyping Illumina 660kQuad arrays using the 'crlmm' package.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/human660quadv1aCrlmm_1.0.3.zip" }, "BSgenome.Athaliana.TAIR.04232008": { "organism": "Arabidopsis thaliana", "Depends": [ "BSgenome (>= 1.19.2)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/BSgenome.Athaliana.TAIR.04232008_1.3.18.tgz", "Version": "1.3.18", "hasINSTALL": false, "MD5sum": "8c6e451a824acbaa2c2f19f9d086968b", "Maintainer": "Biocore Team c/o BioC user list ", "Author": "H. Pages", "Title": "Arabidopsis thaliana full genome (TAIR version from April 23, 2008)", "source.ver": "src/contrib/BSgenome.Athaliana.TAIR.04232008_1.3.18.tar.gz", "Imports": [ "BSgenome" ], "NeedsCompilation": "no", "Package": "BSgenome.Athaliana.TAIR.04232008", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Arabidopsis_thaliana", "Genetics" ], "Description": "Arabidopsis thaliana full genome as provided by TAIR (snapshot from April 23, 2008) and stored in Biostrings objects.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/BSgenome.Athaliana.TAIR.04232008_1.3.18.zip" }, "hgug4100a.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)", "org.Hs.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hgug4100a.db_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "8bd21c2417e9ea821ce757696c07af8b", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Agilent Human 1 cDNA Microarray Kit annotation data (chip hgug4100a)", "source.ver": "src/contrib/hgug4100a.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Agilent", "Suggests": [ "annotate", "RUnit" ], "Package": "hgug4100a.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AgilentChip", "AnnotationData", "ChipDb", "Homo_sapiens", "hgug4100a" ], "Description": "Agilent Human 1 cDNA Microarray Kit annotation data (chip hgug4100a) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hgug4100a.db_2.8.0.zip" }, "htmg430bprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/htmg430bprobe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "7360ee133bc4572168a66a5d30d57212", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type htmg430b", "source.ver": "src/contrib/htmg430bprobe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "htmg430bprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "htmg430b", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HT\\_MG-430B\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/htmg430bprobe_2.11.0.zip" }, "hgug4111a.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)", "org.Hs.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hgug4111a.db_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "5929de368eb2d083feffdc1664aea30d", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Agilent Human 1B annotation data (chip hgug4111a)", "source.ver": "src/contrib/hgug4111a.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Agilent", "Suggests": [ "annotate", "RUnit" ], "Package": "hgug4111a.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AgilentChip", "AnnotationData", "ChipDb", "Homo_sapiens", "hgug4111a" ], "Description": "Agilent Human 1B annotation data (chip hgug4111a) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hgug4111a.db_2.8.0.zip" }, "Mus.musculus": { "organism": "Mus musculus", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.17.11)", "methods", "OrganismDbi", "GenomicFeatures", "GO.db", "org.Mm.eg.db", "TxDb.Mmusculus.UCSC.mm10.knownGene" ], "hasNEWS": false, "Version": "1.1.0", "hasINSTALL": false, "MD5sum": "3a70aca30fd7af72c6ae4abbcba1ab6b", "Maintainer": "Bioconductor Package Maintainer ", "Author": "Bioconductor Core Team", "Title": "Annotation package for the Mus.musculus object", "source.ver": "src/contrib/Mus.musculus_1.1.0.tar.gz", "Imports": [ "GenomicFeatures", "AnnotationDbi" ], "NeedsCompilation": "no", "Package": "Mus.musculus", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Genetics", "Mus_musculus", "OrganismDb" ], "Description": "Contains the Mus.musculus object to access data from several related annotation packages.", "hasLICENSE": false }, "rtu34probe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/rtu34probe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "ffee66879406d760704e73fff1bae979", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type rtu34", "source.ver": "src/contrib/rtu34probe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "rtu34probe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Rattus_norvegicus", "probe", "rtu34" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was RT-U34\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/rtu34probe_2.11.0.zip" }, "porcineprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/porcineprobe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "75d95745eb6093779d751883ea4f9d49", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type porcine", "source.ver": "src/contrib/porcineprobe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "porcineprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Sus_scrofa", "porcine", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Porcine\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/porcineprobe_2.11.0.zip" }, "pd.rhegene.1.0.st": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.rhegene.1.0.st_3.8.0.tgz", "Version": "3.8.0", "hasINSTALL": false, "MD5sum": "a8d71bc1d5858f8df334754bb4131c04", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for Affymetrix RheGene-1_0-st", "source.ver": "src/contrib/pd.rhegene.1.0.st_3.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.rhegene.1.0.st", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for Affymetrix RheGene-1_0-st", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.rhegene.1.0.st_3.8.0.zip" }, "pd.rat230.2": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.rat230.2_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "615a841e1594e43f39bbb43120848d6d", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name Rat230_2", "source.ver": "src/contrib/pd.rat230.2_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.rat230.2", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name Rat230_2", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.rat230.2_1.8.0.zip" }, "pd.hg.u95a": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.hg.u95a_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "ad1ce7c7bb00a80158927ce61bd3280a", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name HG_U95A", "suggestsMe": [ "SCAN.UPC" ], "source.ver": "src/contrib/pd.hg.u95a_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.hg.u95a", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name HG_U95A", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.hg.u95a_1.8.0.zip" }, "pd.celegans": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.celegans_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "eace60969b49ff54a289f50fb6ca72e3", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name Celegans", "source.ver": "src/contrib/pd.celegans_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.celegans", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name Celegans", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.celegans_1.8.0.zip" }, "org.Pf.plasmo.db": { "organism": "Plasmodium falciparum", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.37)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/org.Pf.plasmo.db_2.8.1.tgz", "Version": "2.8.1", "hasINSTALL": false, "MD5sum": "25c0f2e08a0682b9e3cd7862a214f6d0", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Genome wide annotation for Malaria", "source.ver": "src/contrib/org.Pf.plasmo.db_2.8.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "Suggests": [ "annotate", "RUnit" ], "Package": "org.Pf.plasmo.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "OrgDb", "Plasmodium_falciparum" ], "Description": "Genome wide annotation for Malaria, primarily based on mapping using Entrez Gene identifiers.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/org.Pf.plasmo.db_2.8.1.zip" }, "human.db0": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.1.15)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/human.db0_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "df5ec0b89704cd1af8b275bdf9e35e5f", "Maintainer": "Biocore Team c/o BioC user list ", "Author": "Marc Carlson, Nianhua Li, Herve Pages", "Title": "Base Level Annotation databases for human", "suggestsMe": [ "AnnotationForge", "Resourcerer" ], "source.ver": "src/contrib/human.db0_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "Package": "human.db0", "License": "The Artistic License, Version 2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Homo_sapiens", "db0" ], "Description": "Base annotation databases for human, intended ONLY to be used by AnnotationDbi to produce regular annotation packages.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/human.db0_2.8.0.zip" }, "BSgenome.Rnorvegicus.UCSC.rn4": { "organism": "Rattus norvegicus", "Depends": [ "BSgenome (>= 1.19.2)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/BSgenome.Rnorvegicus.UCSC.rn4_1.3.17.tgz", "Version": "1.3.17", "hasINSTALL": false, "MD5sum": "541d4004a6a1e6085a73bd23ebbbe2b0", "Maintainer": "Biocore Team c/o BioC user list ", "Author": "H. Pages", "Title": "Rattus norvegicus (Rat) full genome (UCSC version rn4)", "suggestsMe": [ "oneChannelGUI" ], "source.ver": "src/contrib/BSgenome.Rnorvegicus.UCSC.rn4_1.3.17.tar.gz", "Imports": [ "BSgenome" ], "NeedsCompilation": "no", "Package": "BSgenome.Rnorvegicus.UCSC.rn4", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Genetics", "Rattus_norvegicus" ], "Description": "Rattus norvegicus (Rat) full genome as provided by UCSC (rn4, Nov. 2004) and stored in Biostrings objects.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/BSgenome.Rnorvegicus.UCSC.rn4_1.3.17.zip" }, "rgug4105a.db": { "organism": "Rattus norvegicus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.20.2)", "org.Rn.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/rgug4105a.db_2.8.1.tgz", "Version": "2.8.1", "hasINSTALL": false, "MD5sum": "994b41cdeb81198e8fdba318c7582431", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Agilent annotation data (chip rgug4105a)", "source.ver": "src/contrib/rgug4105a.db_2.8.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Agilent", "Suggests": [ "annotate", "RUnit" ], "Package": "rgug4105a.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AgilentChip", "AnnotationData", "ChipDb", "Rattus_norvegicus", "rgug4105a" ], "Description": "Agilent annotation data (chip rgug4105a) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/rgug4105a.db_2.8.1.zip" }, "pd.hg.u95b": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.hg.u95b_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "62171fd69d5055fc6ea1b0fbaacc4a4c", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name HG_U95B", "source.ver": "src/contrib/pd.hg.u95b_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.hg.u95b", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name HG_U95B", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.hg.u95b_1.8.0.zip" }, "hugene11sttranscriptcluster.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.15.34)", "org.Hs.eg.db (>= 2.6.3)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hugene11sttranscriptcluster.db_4.0.1.tgz", "Version": "4.0.1", "hasINSTALL": false, "MD5sum": "7ea0b1bcce324cb6232977ff0182394b", "Maintainer": "Li, Arthur ", "Author": "Arthur Li", "Title": "Affymetrix Human Gene 1.1-ST Array Transcriptcluster Revision 4 annotation data (chip hugene11sttranscriptcluster)", "source.ver": "src/contrib/hugene11sttranscriptcluster.db_4.0.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate" ], "Package": "hugene11sttranscriptcluster.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "hugene11sttranscriptcluster" ], "Description": "Affymetrix Human Gene 1.1-ST Array Transcriptcluster Revision 4 annotation data (chip hugene11sttranscriptcluster) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hugene11sttranscriptcluster.db_4.0.1.zip" }, "hgu95av2cdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hgu95av2cdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "678ed562ed394d8a967501e840747a40", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "hgu95av2cdf", "suggestsMe": [ "affydata", "AffyExpress", "bgx", "BiocCaseStudies", "Biostrings", "gcrma", "vsn" ], "source.ver": "src/contrib/hgu95av2cdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "hgu95av2cdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "hgu95av2" ], "Description": "A package containing an environment representing the HG_U95Av2.CDF file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hgu95av2cdf_2.11.0.zip" }, "hgu95dcdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hgu95dcdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "16a5f2e8cd5f1a4eb3b2a29bde532ede", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "hgu95dcdf", "source.ver": "src/contrib/hgu95dcdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "hgu95dcdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "hgu95d" ], "Description": "A package containing an environment representing the HG_U95D.CDF file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hgu95dcdf_2.11.0.zip" }, "BSgenome.Rnorvegicus.UCSC.rn5": { "organism": "Rattus norvegicus", "Depends": [ "BSgenome (>= 1.25.1)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/BSgenome.Rnorvegicus.UCSC.rn5_1.3.17.tgz", "Version": "1.3.17", "hasINSTALL": false, "MD5sum": "38f358dabe810fe2d19d486c3c239b3c", "Maintainer": "Bioconductor Package Maintainer ", "Author": "The Bioconductor Dev Team", "Title": "Rattus norvegicus (Rat) full genome (UCSC version rn5)", "source.ver": "src/contrib/BSgenome.Rnorvegicus.UCSC.rn5_1.3.17.tar.gz", "Imports": [ "BSgenome" ], "NeedsCompilation": "no", "Package": "BSgenome.Rnorvegicus.UCSC.rn5", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Genetics", "Rattus_norvegicus" ], "Description": "Rattus norvegicus (Rat) full genome as provided by UCSC (rn5, Mar. 2012) and stored in Biostrings objects.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/BSgenome.Rnorvegicus.UCSC.rn5_1.3.17.zip" }, "yeast2.db": { "organism": "Saccharomyces cerevisiae", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)", "org.Sc.sgd.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/yeast2.db_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "66774e81e0c9a6c583c6d497c71cbaaf", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Affymetrix Yeast Genome 2.0 Array annotation data (chip yeast2)", "source.ver": "src/contrib/yeast2.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate", "RUnit" ], "Package": "yeast2.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Saccharomyces_cerevisiae", "yeast2" ], "Description": "Affymetrix Yeast Genome 2.0 Array annotation data (chip yeast2) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/yeast2.db_2.8.0.zip" }, "pd.hg.u95c": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.hg.u95c_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "54586f6ede50ff610e2245a685ccf927", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name HG_U95C", "source.ver": "src/contrib/pd.hg.u95c_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.hg.u95c", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name HG_U95C", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.hg.u95c_1.8.0.zip" }, "paeg1aprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/paeg1aprobe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "5cbc34910cd30269e3cef175ebbf8b16", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type paeg1a", "source.ver": "src/contrib/paeg1aprobe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "paeg1aprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Pseudomonas_aeruginosa", "paeg1a", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was P\\_aeg1a\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/paeg1aprobe_2.11.0.zip" }, "hgug4110b.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)", "org.Hs.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hgug4110b.db_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "733c86a62419b72a530ac8dca581fb0a", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Agilent Human 1A (V2) annotation data (chip hgug4110b)", "source.ver": "src/contrib/hgug4110b.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Agilent", "Suggests": [ "annotate", "RUnit" ], "Package": "hgug4110b.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AgilentChip", "AnnotationData", "ChipDb", "Homo_sapiens", "hgug4110b" ], "Description": "Agilent Human 1A (V2) annotation data (chip hgug4110b) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hgug4110b.db_2.8.0.zip" }, "illuminaHumanv4.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.37)", "org.Hs.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/illuminaHumanv4.db_1.16.0.tgz", "Version": "1.16.0", "hasINSTALL": false, "MD5sum": "509272753552bcae97659b60ddf4805b", "Maintainer": "Mark Dunning ", "Author": "Mark Dunning, Andy Lynch, Matthew Eldridge", "Title": "Illumina HumanHT12v4 annotation data (chip illuminaHumanv4)", "source.ver": "src/contrib/illuminaHumanv4.db_1.16.0.tar.gz", "Imports": [ "methods", "AnnotationDbi", "AnnotationForge" ], "NeedsCompilation": "no", "manufacturer": "Illumina", "Suggests": [ "annotate", "RUnit" ], "Package": "illuminaHumanv4.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "ChipDb", "Homo_sapiens", "IlluminaChip", "illuminaHumanv4" ], "Description": "Illumina HumanHT12v4 annotation data (chip illuminaHumanv4) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/illuminaHumanv4.db_1.16.0.zip" }, "mwgcod.db": { "organism": "Mus musculus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.40)", "org.Hs.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/mwgcod.db_2.14.0.tgz", "Version": "2.14.0", "hasINSTALL": false, "MD5sum": "195142320fdcdbd6badfc39f2dfea1b9", "Maintainer": "Diego Diez ", "Author": "Diego Diez", "Title": "GE CodeLink Mouse Whole Genome Bioarray (~36 000 mouse gene targets) annotation data (chip mwgcod)", "source.ver": "src/contrib/mwgcod.db_2.14.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "GE", "Suggests": [ "annotate", "RUnit" ], "Package": "mwgcod.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "ChipDb", "GEChip", "Mus_musculus", "mwgcod" ], "Description": "GE CodeLink Mouse Whole Genome Bioarray (~36 000 mouse gene targets) annotation data (chip mwgcod) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/mwgcod.db_2.14.0.zip" }, "BSgenome.Btaurus.UCSC.bosTau3": { "organism": "Bos taurus", "Depends": [ "BSgenome (>= 1.14.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/BSgenome.Btaurus.UCSC.bosTau3_1.3.16.tgz", "Version": "1.3.16", "hasINSTALL": false, "MD5sum": "8662b972fa64a331f48f8028a5d2f864", "Maintainer": "Biocore Team c/o BioC user list ", "Author": "H. Pages", "Title": "Bos taurus (Cow) full genome (UCSC version bosTau3)", "source.ver": "src/contrib/BSgenome.Btaurus.UCSC.bosTau3_1.3.16.tar.gz", "Imports": [ "BSgenome" ], "NeedsCompilation": "no", "Package": "BSgenome.Btaurus.UCSC.bosTau3", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Bos_taurus", "Genetics" ], "Description": "Bos taurus (Cow) full genome as provided by UCSC (bosTau3, Aug. 2006) and stored in Biostrings objects.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/BSgenome.Btaurus.UCSC.bosTau3_1.3.16.zip" }, "rgu34acdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/rgu34acdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "0071f36cfcb6b6ebf3d2dffd8bfb3e94", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "rgu34acdf", "source.ver": "src/contrib/rgu34acdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "rgu34acdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Rattus_norvegicus", "cdf", "rgu34a" ], "Description": "A package containing an environment representing the RG_U34A.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/rgu34acdf_2.11.0.zip" }, "pd.hg.u95d": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.hg.u95d_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "6c9e1df6a8c9e83ecf2def7d62dd7ad8", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name HG_U95D", "source.ver": "src/contrib/pd.hg.u95d_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.hg.u95d", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name HG_U95D", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.hg.u95d_1.8.0.zip" }, "barley1cdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/barley1cdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "84f6fc3a71cff44bed3315c4c3cc1a50", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "barley1cdf", "source.ver": "src/contrib/barley1cdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "barley1cdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Hordeum_vulgare", "barley1", "cdf" ], "Description": "A package containing an environment representing the Barley1.CDF file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/barley1cdf_2.11.0.zip" }, "IlluminaHumanMethylation450kprobe": { "Depends": [ "R (>= 2.10)", "AnnotationDbi (>= 1.13.18)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/IlluminaHumanMethylation450kprobe_2.0.6.tgz", "Version": "2.0.6", "hasINSTALL": false, "MD5sum": "84c31861fcbaddbf2a9c500b8d8d767d", "Maintainer": "Tim Triche, Jr. ", "Author": "Tim Triche, Jr. ", "Title": "Probe sequence data for microarrays of type IlluminaHumanMethylation450k", "source.ver": "src/contrib/IlluminaHumanMethylation450kprobe_2.0.6.tar.gz", "NeedsCompilation": "no", "Package": "IlluminaHumanMethylation450kprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AnnotationData", "Homo_sapiens", "Illumina" ], "Description": "Probe sequences from Illumina (ftp.illumina.com) for hm450 probes", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/IlluminaHumanMethylation450kprobe_2.0.6.zip" }, "BSgenome.Btaurus.UCSC.bosTau4": { "organism": "Bos taurus", "Depends": [ "BSgenome (>= 1.19.2)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/BSgenome.Btaurus.UCSC.bosTau4_1.3.17.tgz", "Version": "1.3.17", "hasINSTALL": false, "MD5sum": "69d7d589dbea0a98b0618d821a30862d", "Maintainer": "Biocore Team c/o BioC user list ", "Author": "H. Pages", "Title": "Bos taurus (Cow) full genome (UCSC version bosTau4)", "source.ver": "src/contrib/BSgenome.Btaurus.UCSC.bosTau4_1.3.17.tar.gz", "Imports": [ "BSgenome" ], "NeedsCompilation": "no", "Package": "BSgenome.Btaurus.UCSC.bosTau4", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Bos_taurus", "Genetics" ], "Description": "Bos taurus (Cow) full genome as provided by UCSC (bosTau4, Oct. 2007) and stored in Biostrings objects.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/BSgenome.Btaurus.UCSC.bosTau4_1.3.17.zip" }, "hgu95ccdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hgu95ccdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "11aaebc65059668d7db4f7c7961d7144", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "hgu95ccdf", "source.ver": "src/contrib/hgu95ccdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "hgu95ccdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "hgu95c" ], "Description": "A package containing an environment representing the HG_U95C.CDF file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hgu95ccdf_2.11.0.zip" }, "moe430aprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/moe430aprobe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "610d94e9571c5d329adc2c1248f05727", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type moe430a", "source.ver": "src/contrib/moe430aprobe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "moe430aprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "moe430a", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was MOE430A\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/moe430aprobe_2.11.0.zip" }, "rhesusprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/rhesusprobe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "780ebab6f116b6693a01c46631d0e360", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type rhesus", "source.ver": "src/contrib/rhesusprobe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "rhesusprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Macaca_mulatta", "probe", "rhesus" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Rhesus\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/rhesusprobe_2.11.0.zip" }, "pd.hg.u95e": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.hg.u95e_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "23219b9e767a5991fe98847b8e383a40", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name HG_U95E", "source.ver": "src/contrib/pd.hg.u95e_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.hg.u95e", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name HG_U95E", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.hg.u95e_1.8.0.zip" }, "pd.2006.10.31.rn34.refseq.promoter": { "Depends": [ "R (>= 2.11.0)", "methods", "RSQLite (>= 0.7-1)", "oligoClasses (>= 1.9.30)", "oligo (>= 1.11.18)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.2006.10.31.rn34.refseq.promoter_0.99.2.tgz", "Version": "0.99.2", "hasINSTALL": false, "MD5sum": "61d7b8d4c463558764684923fae54cd3", "Maintainer": "Martin Aryee ", "Author": "Martin Aryee", "Title": "Platform Design Info for NimbleGen 2006-10-31_rn34_refseq_promoter", "source.ver": "src/contrib/pd.2006.10.31.rn34.refseq.promoter_0.99.2.tar.gz", "Imports": [ "Biostrings (>= 2.13.50)", "IRanges (>= 1.3.89)" ], "NeedsCompilation": "no", "Package": "pd.2006.10.31.rn34.refseq.promoter", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for NimbleGen 2006-10-31_rn34_refseq_promoter", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.2006.10.31.rn34.refseq.promoter_0.99.2.zip" }, "humanCHRLOC": { "organism": "Homo sapiens", "Depends": [ "R(>= 2.7.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/humanCHRLOC_2.1.6.tgz", "Version": "2.1.6", "hasINSTALL": false, "MD5sum": "113450c0822000c9b4e8a0141cf4b819", "Maintainer": "Biocore Data Team ", "Author": "Ting-Yuan Liu, ChenWei Lin, Seth Falcon, Jianhua Zhang, James W. MacDonald", "Title": "A data package containing annotation data for humanCHRLOC", "suggestsMe": [ "annotate" ], "source.ver": "src/contrib/humanCHRLOC_2.1.6.tar.gz", "NeedsCompilation": "no", "Package": "humanCHRLOC", "License": "The Artistic License, Version 2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "FunctionalAnnotation", "Homo_sapiens" ], "Description": "Annotation data file for humanCHRLOC assembled using data from public data repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/humanCHRLOC_2.1.6.zip" }, "mu11ksubb.db": { "organism": "Mus musculus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.20.2)", "org.Mm.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/mu11ksubb.db_2.8.1.tgz", "Version": "2.8.1", "hasINSTALL": false, "MD5sum": "fe58b5c6174b52215f5c9e359a56cff2", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Affymetrix Murine 11K Set annotation data (chip mu11ksubb)", "source.ver": "src/contrib/mu11ksubb.db_2.8.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate", "RUnit" ], "Package": "mu11ksubb.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Mus_musculus", "mu11ksubb" ], "Description": "Affymetrix Murine 11K Set annotation data (chip mu11ksubb) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/mu11ksubb.db_2.8.1.zip" }, "org.Gg.eg.db": { "organism": "Gallus gallus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/org.Gg.eg.db_2.8.0.tgz", "Version": "2.8.0", "dependsOnMe": [ "chicken.db" ], "hasINSTALL": false, "MD5sum": "fe168f5973aaa080fd4e042ab5db6dc2", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Genome wide annotation for Chicken", "source.ver": "src/contrib/org.Gg.eg.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "Suggests": [ "annotate", "RUnit" ], "Package": "org.Gg.eg.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Gallus_gallus", "OrgDb" ], "Description": "Genome wide annotation for Chicken, primarily based on mapping using Entrez Gene identifiers.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/org.Gg.eg.db_2.8.0.zip" }, "reactome.db": { "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.11.8)" ], "hasNEWS": true, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/reactome.db_1.42.0.tgz", "Version": "1.42.0", "hasINSTALL": false, "MD5sum": "8f0eb5486d21389ad55a1ed39a4e8173", "Maintainer": "Willem Ligtenberg ", "Author": "Willem Ligtenberg", "Title": "A set of annotation maps for reactome", "suggestsMe": [ "AnnotationDbi", "ChIPpeakAnno", "gCMAP", "MLP" ], "source.ver": "src/contrib/reactome.db_1.42.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "Package": "reactome.db", "vignettes": [ "vignettes/reactome.db/inst/doc/" ], "License": "file LICENSE", "hasREADME": false, "biocViews": [ "AnnotationData", "FunctionalAnnotation" ], "Description": "A set of annotation maps for reactome assembled using data from reactome", "hasLICENSE": true, "importsMe": [ "ReactomePA" ], "win.binary.ver": "bin/windows/contrib/2.16/reactome.db_1.42.0.zip" }, "gp53cdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/gp53cdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "325bc5889cf5f5db2ded88b499fecee0", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "gp53cdf", "source.ver": "src/contrib/gp53cdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "gp53cdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "gp53" ], "Description": "A package containing an environment representing the GP53.CDF file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/gp53cdf_2.11.0.zip" }, "hgu133atagprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hgu133atagprobe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "a50184048f3bf588d9e4375fad006e8c", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type hgu133atag", "suggestsMe": [ "frmaTools" ], "source.ver": "src/contrib/hgu133atagprobe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "hgu133atagprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "hgu133atag", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG-U133A\\_tag\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hgu133atagprobe_2.11.0.zip" }, "mgu74acdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/mgu74acdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "bed51cbe18cc0c3522745683353dc0de", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "mgu74acdf", "source.ver": "src/contrib/mgu74acdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "mgu74acdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "cdf", "mgu74a" ], "Description": "A package containing an environment representing the MG_U74A.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/mgu74acdf_2.11.0.zip" }, "pd.ht.hg.u133a": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.ht.hg.u133a_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "14266719dafbb0c4b0704929aa67a60f", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name HT_HG-U133A", "source.ver": "src/contrib/pd.ht.hg.u133a_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.ht.hg.u133a", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name HT_HG-U133A", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.ht.hg.u133a_1.8.0.zip" }, "human1mduov3bCrlmm": { "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/human1mduov3bCrlmm_1.0.4.tgz", "Version": "1.0.4", "hasINSTALL": false, "MD5sum": "0ff9f1e8bcc6348d6777bbb982ae0325", "Maintainer": "Matthew Ritchie ", "Author": "Rafael A Irizarry", "Title": "Metadata for fast genotyping with the 'crlmm' package", "source.ver": "src/contrib/human1mduov3bCrlmm_1.0.4.tar.gz", "Imports": [ "utils" ], "NeedsCompilation": "no", "Package": "human1mduov3bCrlmm", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Package with metadata for genotyping Illumina 1M Duo arrays using the 'crlmm' package.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/human1mduov3bCrlmm_1.0.4.zip" }, "IlluminaHumanMethylation27kmanifest": { "Depends": [ "R (>= 2.13.0)", "minfi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/IlluminaHumanMethylation27kmanifest_0.4.0.tgz", "Version": "0.4.0", "hasINSTALL": false, "MD5sum": "c4cdda637dccf85f193342c7262b02a6", "Maintainer": "Kasper Daniel Hansen ", "Author": "Kasper Daniel Hansen", "Title": "Annotation for Illumina's 27k methylation arrays", "source.ver": "src/contrib/IlluminaHumanMethylation27kmanifest_0.4.0.tar.gz", "NeedsCompilation": "no", "Package": "IlluminaHumanMethylation27kmanifest", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "DNAMethylation", "Homo_sapiens", "IlluminaChip" ], "Description": "Manifest for Illumina's 27k array data", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/IlluminaHumanMethylation27kmanifest_0.4.0.zip" }, "RmiR.hsa": { "Depends": [ "R (>= 2.7.0)" ], "vignetteTitles": [ "RmiRdb-fig1a.pdf", "RmiRdb-fig1b.pdf", "RmiRdb-fig2a.pdf", "RmiRdb-fig2b.pdf", "RmiR.hsa Vignette", "Rplots.pdf" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/RmiR.hsa_1.0.4.tgz", "Version": "1.0.4", "hasINSTALL": false, "MD5sum": "e2ac6490589a54f78b27d7ea8dc0ce95", "Maintainer": "Francesco Favero ", "Author": "Francesco Favero", "Title": "Various databases of microRNA Targets", "source.ver": "src/contrib/RmiR.hsa_1.0.4.tar.gz", "Imports": [ "AnnotationDbi" ], "NeedsCompilation": "no", "Suggests": [ "methods", "hgug4112a.db" ], "Package": "RmiR.hsa", "vignettes": [ "vignettes/RmiR.hsa/inst/doc/RmiRdb-fig1a.pdf", "vignettes/RmiR.hsa/inst/doc/RmiRdb-fig1b.pdf", "vignettes/RmiR.hsa/inst/doc/RmiRdb-fig2a.pdf", "vignettes/RmiR.hsa/inst/doc/RmiRdb-fig2b.pdf", "vignettes/RmiR.hsa/inst/doc/RmiR.hsa.pdf", "vignettes/RmiR.hsa/inst/doc/Rplots.pdf" ], "License": "The Artistic License, Version 2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "CustomDBSchema", "Homo_sapiens", "miRNA" ], "Description": "Various databases of microRNA Targets", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/RmiR.hsa_1.0.4.zip" }, "plasmodiumanophelesprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/plasmodiumanophelesprobe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "fedd9885a69fc26fbbe1c6a51f99f877", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type plasmodiumanopheles", "source.ver": "src/contrib/plasmodiumanophelesprobe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "plasmodiumanophelesprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Anopheles_gambiae", "Plasmodium_falciparum", "plasmodiumanopheles", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Plasmodium\\_Anopheles\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/plasmodiumanophelesprobe_2.11.0.zip" }, "pd.u133.x3p": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.u133.x3p_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "860200ad75d3cee576d37fc42588bda5", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name U133_X3P", "source.ver": "src/contrib/pd.u133.x3p_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.u133.x3p", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name U133_X3P", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.u133.x3p_1.8.0.zip" }, "pd.mirna.1.0": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.mirna.1.0_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "ed328be9bde51c2d9ccfc550fdd17f54", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name miRNA-1_0", "source.ver": "src/contrib/pd.mirna.1.0_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.mirna.1.0", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name miRNA-1_0", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.mirna.1.0_1.8.0.zip" }, "targetscan.Hs.eg.db": { "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.18.3)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/targetscan.Hs.eg.db_0.6.0.tgz", "Version": "0.6.0", "hasINSTALL": false, "MD5sum": "0f2decf34cd96a845960979352cbb37c", "Maintainer": "James F. Reid ", "Author": "Gabor Csardi ", "Title": "TargetScan miRNA target predictions for human", "suggestsMe": [ "eisa" ], "source.ver": "src/contrib/targetscan.Hs.eg.db_0.6.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "Package": "targetscan.Hs.eg.db", "License": "file LICENSE", "hasREADME": false, "biocViews": [ "AnnotationData", "FunctionalAnnotation" ], "Description": "TargetScan miRNA target predictions for human assembled using data from the TargetScan website. TargetScan predicts biological targets of miRNAs by searching for the presence of conserved 8mer and 7mer sites that match the seed region of each miRNA. Also identified are sites with mismatches in the seed region that are compensated by conserved 3' pairing. In mammals, predictions are ranked based on the predicted efficacy of targeting as calculated using the context scores of the sites.", "hasLICENSE": true, "win.binary.ver": "bin/windows/contrib/2.16/targetscan.Hs.eg.db_0.6.0.zip" }, "seqnames.db": { "Depends": [ "R (>= 2.15.0)", "methods", "AnnotationDbi (>= 1.19.4)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/seqnames.db_1.0.1.tgz", "Version": "1.0.1", "hasINSTALL": false, "MD5sum": "dee48e4f7dae2e7051edb0273f17d42c", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson, Herve Pages", "Title": "Chromosome Name translations", "suggestsMe": [ "AnnotationDbi", "GenomicRanges" ], "source.ver": "src/contrib/seqnames.db_1.0.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "Package": "seqnames.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Provides translation information for various kinds of chromosome name conventions.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/seqnames.db_1.0.1.zip" }, "pd.rjpgene.1.1.st": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.rjpgene.1.1.st_3.8.0.tgz", "Version": "3.8.0", "hasINSTALL": false, "MD5sum": "676d24092b0805684779ced780f73e4f", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for Affymetrix RJpGene-1_1-st", "source.ver": "src/contrib/pd.rjpgene.1.1.st_3.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.rjpgene.1.1.st", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for Affymetrix RJpGene-1_1-st", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.rjpgene.1.1.st_3.8.0.zip" }, "moe430bprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/moe430bprobe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "9535461631081bc675a53648a94df655", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type moe430b", "source.ver": "src/contrib/moe430bprobe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "moe430bprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "moe430b", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was MOE430B\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/moe430bprobe_2.11.0.zip" }, "htmg430acdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/htmg430acdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "2edf77136507487e4aeec9940e1af605", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "htmg430acdf", "source.ver": "src/contrib/htmg430acdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "htmg430acdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "cdf", "htmg430a" ], "Description": "A package containing an environment representing the HT_MG-430A.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/htmg430acdf_2.11.0.zip" }, "FDb.UCSC.tRNAs": { "organism": "Homo sapiens", "Depends": [ "GenomicFeatures (>= 1.9.39)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/FDb.UCSC.tRNAs_1.0.0.tgz", "Version": "1.0.0", "hasINSTALL": false, "MD5sum": "06e2cda88e71cbb804522725156fcab4", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Annotation package for FeatureDb object(s)", "suggestsMe": [ "GenomicFeatures" ], "source.ver": "src/contrib/FDb.UCSC.tRNAs_1.0.0.tar.gz", "Imports": [ "GenomicFeatures", "AnnotationDbi" ], "NeedsCompilation": "no", "Package": "FDb.UCSC.tRNAs", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Genetics", "Homo_sapiens", "TranscriptDb" ], "Description": "Exposes an annotation databases generated from UCSC by exposing these as FeatureDb objects", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/FDb.UCSC.tRNAs_1.0.0.zip" }, "pd.rg.u34a": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.rg.u34a_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "7f976e09164414886ef2008864ed47c6", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name RG_U34A", "source.ver": "src/contrib/pd.rg.u34a_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.rg.u34a", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name RG_U34A", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.rg.u34a_1.8.0.zip" }, "mu6500subbcdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/mu6500subbcdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "7741af0a89d0db24b539a5fcea22b7d8", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "mu6500subbcdf", "source.ver": "src/contrib/mu6500subbcdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "mu6500subbcdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "cdf", "mu6500subb" ], "Description": "A package containing an environment representing the Mu6500subB.CDF file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/mu6500subbcdf_2.11.0.zip" }, "hom.Hs.inp.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hom.Hs.inp.db_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "8247689cdb8dd5478e7aedbed415f3c5", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson, Herve Pages", "Title": "Homology information for Homo Sapiens from Inparanoid", "suggestsMe": [ "annotate", "AnnotationDbi", "AnnotationForge", "AnnotationFuncs" ], "source.ver": "src/contrib/hom.Hs.inp.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "Package": "hom.Hs.inp.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Homo_sapiens", "InparanoidDb" ], "Description": "Homology information for Homo Sapiens from Inparanoid assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hom.Hs.inp.db_2.8.0.zip" }, "human370quadv3cCrlmm": { "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/human370quadv3cCrlmm_1.0.3.tgz", "Version": "1.0.3", "hasINSTALL": false, "MD5sum": "33c3ccc3793ed95647418b746a5177f9", "Maintainer": "Matthew Ritchie ", "Author": "Rafael A Irizarry", "Title": "Metadata for fast genotyping with the 'crlmm' package", "source.ver": "src/contrib/human370quadv3cCrlmm_1.0.3.tar.gz", "Imports": [ "utils" ], "NeedsCompilation": "no", "Package": "human370quadv3cCrlmm", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Package with metadata for genotyping Illumina 370kQuad arrays using the 'crlmm' package.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/human370quadv3cCrlmm_1.0.3.zip" }, "ath1121501.db": { "organism": "Arabidopsis thaliana", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)", "org.At.tair.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/ath1121501.db_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "72be6170d08e284db8d13cb42693828b", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Affymetrix Arabidopsis ATH1 Genome Array annotation data (chip ath1121501)", "source.ver": "src/contrib/ath1121501.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate", "RUnit" ], "Package": "ath1121501.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Arabidopsis_thaliana", "ChipDb", "ath1121501" ], "Description": "Affymetrix Arabidopsis ATH1 Genome Array annotation data (chip ath1121501) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/ath1121501.db_2.8.0.zip" }, "illuminaHumanWGDASLv3.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.37)", "org.Hs.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/illuminaHumanWGDASLv3.db_1.16.0.tgz", "Version": "1.16.0", "hasINSTALL": false, "MD5sum": "56c967738d22f9e7e3048d83841531b2", "Maintainer": "Mark Dunning ", "Author": "Mark Dunning, Andy Lynch, Matthew Eldridge", "Title": "Illumina HumanHT12WGDASLv3 annotation data (chip illuminaHumanWGDASLv3)", "source.ver": "src/contrib/illuminaHumanWGDASLv3.db_1.16.0.tar.gz", "Imports": [ "methods", "AnnotationDbi", "AnnotationForge" ], "NeedsCompilation": "no", "manufacturer": "Illumina", "Suggests": [ "annotate", "RUnit" ], "Package": "illuminaHumanWGDASLv3.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "ChipDb", "Homo_sapiens", "IlluminaChip", "illuminaHumanWGDASLv3" ], "Description": "Illumina HumanHT12WGDASLv3 annotation data (chip illuminaHumanWGDASLv3) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/illuminaHumanWGDASLv3.db_1.16.0.zip" }, "mouseCHRLOC": { "organism": "Mus musculus", "Depends": [ "R(>= 2.7.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/mouseCHRLOC_2.1.6.tgz", "Version": "2.1.6", "hasINSTALL": false, "MD5sum": "0b81d7391e628cc355af4de3c5585a5f", "Maintainer": "Biocore Data Team ", "Author": "Ting-Yuan Liu, ChenWei Lin, Seth Falcon, Jianhua Zhang, James W. MacDonald", "Title": "A data package containing annotation data for mouseCHRLOC", "source.ver": "src/contrib/mouseCHRLOC_2.1.6.tar.gz", "NeedsCompilation": "no", "Package": "mouseCHRLOC", "License": "The Artistic License, Version 2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "FunctionalAnnotation", "Mus_musculus" ], "Description": "Annotation data file for mouseCHRLOC assembled using data from public data repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/mouseCHRLOC_2.1.6.zip" }, "cottonprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/cottonprobe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "37fccf8ce8e06afcfe9e4d4798e8c3ba", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type cotton", "source.ver": "src/contrib/cottonprobe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "cottonprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Gossypium_arboretum", "Gossypium_barbadense", "Gossypium_hirsutum", "Gossypium_raimondii", "cotton", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Cotton\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/cottonprobe_2.11.0.zip" }, "rgu34c.db": { "organism": "Rattus norvegicus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.20.2)", "org.Rn.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/rgu34c.db_2.8.1.tgz", "Version": "2.8.1", "hasINSTALL": false, "MD5sum": "87d5c8f819d6ded79dd651fc732557bf", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Affymetrix Rat Genome U34 Set annotation data (chip rgu34c)", "source.ver": "src/contrib/rgu34c.db_2.8.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate", "RUnit" ], "Package": "rgu34c.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Rattus_norvegicus", "rgu34c" ], "Description": "Affymetrix Rat Genome U34 Set annotation data (chip rgu34c) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/rgu34c.db_2.8.1.zip" }, "pd.rg.u34b": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.rg.u34b_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "055e6710ce47037236f92c23b51e5e7a", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name RG_U34B", "source.ver": "src/contrib/pd.rg.u34b_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.rg.u34b", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name RG_U34B", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.rg.u34b_1.8.0.zip" }, "pd.ragene.1.1.st.v1": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.ragene.1.1.st.v1_3.8.0.tgz", "Version": "3.8.0", "hasINSTALL": false, "MD5sum": "a1403d4168ae03bbd33fa198f8ab195c", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for Affymetrix RaGene-1_1-st-v1", "source.ver": "src/contrib/pd.ragene.1.1.st.v1_3.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.ragene.1.1.st.v1", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for Affymetrix RaGene-1_1-st-v1", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.ragene.1.1.st.v1_3.8.0.zip" }, "mu19ksuba.db": { "organism": "Mus musculus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.20.2)", "org.Mm.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/mu19ksuba.db_2.8.1.tgz", "Version": "2.8.1", "hasINSTALL": false, "MD5sum": "bb4cdb998e00c38cc66d71a3f5edf094", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Affymetrix Murine Genome 19k Set annotation data (chip mu19ksuba)", "source.ver": "src/contrib/mu19ksuba.db_2.8.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate", "RUnit" ], "Package": "mu19ksuba.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Mus_musculus", "mu19ksuba" ], "Description": "Affymetrix Murine Genome 19k Set annotation data (chip mu19ksuba) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/mu19ksuba.db_2.8.1.zip" }, "TxDb.Athaliana.BioMart.plantsmart10": { "organism": "Arabidopsis thaliana", "Depends": [ "GenomicFeatures (>= 1.5.27)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/TxDb.Athaliana.BioMart.plantsmart10_2.6.2.tgz", "Version": "2.6.2", "hasINSTALL": false, "MD5sum": "3a0e2451d90de453ed6d3a2dc7a0d97f", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Annotation package for the Athaliana_BioMart_plantsmart10_TxDb object", "source.ver": "src/contrib/TxDb.Athaliana.BioMart.plantsmart10_2.6.2.tar.gz", "Imports": [ "GenomicFeatures", "AnnotationDbi" ], "NeedsCompilation": "no", "Package": "TxDb.Athaliana.BioMart.plantsmart10", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Arabidopsis_thaliana", "Genetics" ], "Description": "Contains the Athaliana_BioMart_plantsmart10_TxDb object annotation database as generated from BioMart", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/TxDb.Athaliana.BioMart.plantsmart10_2.6.2.zip" }, "pd.rg.u34c": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.rg.u34c_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "a8ab4f18aabc7fc7e479ee138d70bbd3", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name RG_U34C", "source.ver": "src/contrib/pd.rg.u34c_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.rg.u34c", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name RG_U34C", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.rg.u34c_1.8.0.zip" }, "hu6800.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)", "org.Hs.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hu6800.db_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "92241944830bb429be56b5403b43fc6b", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Affymetrix HuGeneFL Genome Array annotation data (chip hu6800)", "suggestsMe": [ "adSplit", "geneplotter", "GlobalAncova", "globaltest", "idiogram", "MLInterfaces", "pcot2", "safe", "SAGx" ], "source.ver": "src/contrib/hu6800.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate", "RUnit" ], "Package": "hu6800.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Homo_sapiens", "hu6800" ], "Description": "Affymetrix HuGeneFL Genome Array annotation data (chip hu6800) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hu6800.db_2.8.0.zip" }, "mouse430a2.db": { "organism": "Mus musculus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.20.2)", "org.Mm.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/mouse430a2.db_2.8.1.tgz", "Version": "2.8.1", "hasINSTALL": false, "MD5sum": "5ccfdef359eab0997058d7b7259b11e7", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Affymetrix Mouse Genome 430A 2.0 Array annotation data (chip mouse430a2)", "source.ver": "src/contrib/mouse430a2.db_2.8.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate", "RUnit" ], "Package": "mouse430a2.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Mus_musculus", "mouse430a2" ], "Description": "Affymetrix Mouse Genome 430A 2.0 Array annotation data (chip mouse430a2) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/mouse430a2.db_2.8.1.zip" }, "FDb.InfiniumMethylation.hg19": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.10)", "GenomicFeatures (>= 1.7.22)", "Biostrings", "AnnotationDbi", "rtracklayer" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/FDb.InfiniumMethylation.hg19_1.0.1.tgz", "Version": "1.0.1", "hasINSTALL": false, "MD5sum": "c243ed10e0f7d38476daeac679c119d9", "Maintainer": "Tim Triche, Jr. ", "Author": "Tim Triche, Jr.", "Title": "Annotation package for Illumina Infinium DNA methylation array probes", "suggestsMe": [ "methylumi" ], "source.ver": "src/contrib/FDb.InfiniumMethylation.hg19_1.0.1.tar.gz", "Imports": [ "GenomicFeatures", "AnnotationDbi", "rtracklayer" ], "NeedsCompilation": "no", "Suggests": [ "SNPlocs.Hsapiens.dbSNP.20111119", "BSgenome.Hsapiens.UCSC.hg19", "TxDb.Hsapiens.UCSC.hg19.knownGene" ], "Package": "FDb.InfiniumMethylation.hg19", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "DNAMethylation", "Homo_sapiens" ], "Description": "Compiled HumanMethylation27 and HumanMethylation450 annotations", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/FDb.InfiniumMethylation.hg19_1.0.1.zip" }, "hugene.1.0.st.v1frmavecs": { "Depends": [ "R (>= 2.10.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hugene.1.0.st.v1frmavecs_0.0.3.tgz", "Version": "0.0.3", "hasINSTALL": false, "MD5sum": "1bf8db846a2170b215894a3de3a26440", "Maintainer": "Matthew N. McCall ", "Author": "Matthew N. McCall , Rafael A. Irizarry ", "Title": "Vectors used by frma for microarrays of type hugene.1.0.st.v1frmavecs", "source.ver": "src/contrib/hugene.1.0.st.v1frmavecs_0.0.3.tar.gz", "NeedsCompilation": "no", "Package": "hugene.1.0.st.v1frmavecs", "License": "GPL (>= 2)", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "hugene.1.0.st.v1" ], "Description": "This package was created by frmaTools version 1.9.2.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hugene.1.0.st.v1frmavecs_0.0.3.zip" }, "rwgcod.db": { "organism": "Rattus norvegicus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.40)", "org.Hs.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/rwgcod.db_2.14.0.tgz", "Version": "2.14.0", "hasINSTALL": false, "MD5sum": "c92e1ac8ac6bd1adfbff3f54943752d6", "Maintainer": "Diego Diez ", "Author": "Diego Diez", "Title": "GE CodeLink Rat Whole Genome Bioarray (~34 000 rat gene targets) annotation data (chip rwgcod)", "source.ver": "src/contrib/rwgcod.db_2.14.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "GE", "Suggests": [ "annotate", "RUnit" ], "Package": "rwgcod.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "ChipDb", "GEChip", "Rattus_norvegicus", "rwgcod" ], "Description": "GE CodeLink Rat Whole Genome Bioarray (~34 000 rat gene targets) annotation data (chip rwgcod) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/rwgcod.db_2.14.0.zip" }, "rnu34probe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/rnu34probe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "b6c639bd9c6aa85208c826231628fb9b", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type rnu34", "source.ver": "src/contrib/rnu34probe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "rnu34probe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Rattus_norvegicus", "probe", "rnu34" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was RN-U34\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/rnu34probe_2.11.0.zip" }, "ragene10stv1probe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/ragene10stv1probe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "ff2bad3dbbc7308028b3a8a311f2e440", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type ragene10stv1", "source.ver": "src/contrib/ragene10stv1probe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "ragene10stv1probe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Rattus_norvegicus", "probe", "ragene10stv1" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was RaGene-1\\_0-st-v1\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/ragene10stv1probe_2.11.0.zip" }, "Homo.sapiens": { "organism": "Homo sapiens", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.17.11)", "methods", "OrganismDbi", "GenomicFeatures", "GO.db", "org.Hs.eg.db", "TxDb.Hsapiens.UCSC.hg19.knownGene" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/Homo.sapiens_1.0.0.tgz", "Version": "1.0.0", "hasINSTALL": false, "MD5sum": "decbb0456cd570331584e036e79bc047", "Maintainer": "Bioconductor Package Maintainer ", "Author": "Bioconductor Core Team", "Title": "Annotation package for the Homo.sapiens object", "suggestsMe": [ "AnnotationForge", "OrganismDbi" ], "source.ver": "src/contrib/Homo.sapiens_1.0.0.tar.gz", "Imports": [ "GenomicFeatures", "AnnotationDbi" ], "NeedsCompilation": "no", "Package": "Homo.sapiens", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Genetics", "Homo_sapiens", "OrganismDb" ], "Description": "Contains the Homo.sapiens object to access data from several related annotation packages.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/Homo.sapiens_1.0.0.zip" }, "mgu74aprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/mgu74aprobe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "fed7e8dd155a963248a24839517e9e33", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type mgu74a", "source.ver": "src/contrib/mgu74aprobe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "mgu74aprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "mgu74a", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was MG-U74A\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/mgu74aprobe_2.11.0.zip" }, "TxDb.Athaliana.BioMart.plantsmart12": { "organism": "Arabidopsis thaliana", "Depends": [ "GenomicFeatures (>= 1.7.30)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/TxDb.Athaliana.BioMart.plantsmart12_2.7.1.tgz", "Version": "2.7.1", "hasINSTALL": false, "MD5sum": "c84c4d2fff8d56b38eb7e5bb3f4b49d7", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Annotation package for TranscriptDb object(s)", "suggestsMe": [ "waveTiling" ], "source.ver": "src/contrib/TxDb.Athaliana.BioMart.plantsmart12_2.7.1.tar.gz", "Imports": [ "GenomicFeatures", "AnnotationDbi" ], "NeedsCompilation": "no", "Package": "TxDb.Athaliana.BioMart.plantsmart12", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Arabidopsis_thaliana", "Genetics" ], "Description": "Exposes an annotation databases generated from BioMart by exposing these as TranscriptDb objects", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/TxDb.Athaliana.BioMart.plantsmart12_2.7.1.zip" }, "pd.bovgene.1.0.st": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.bovgene.1.0.st_3.8.0.tgz", "Version": "3.8.0", "hasINSTALL": false, "MD5sum": "511e9367b32a2cf4aed6ca30f0c332f9", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for Affymetrix BovGene-1_0-st", "source.ver": "src/contrib/pd.bovgene.1.0.st_3.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.bovgene.1.0.st", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for Affymetrix BovGene-1_0-st", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.bovgene.1.0.st_3.8.0.zip" }, "hu35ksubacdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hu35ksubacdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "457a1fff6809670cdce89946e27c009f", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "hu35ksubacdf", "source.ver": "src/contrib/hu35ksubacdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "hu35ksubacdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "hu35ksuba" ], "Description": "A package containing an environment representing the Hu35KsubA.CDF file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hu35ksubacdf_2.11.0.zip" }, "hi16cod.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.40)", "org.Hs.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hi16cod.db_2.14.0.tgz", "Version": "2.14.0", "hasINSTALL": false, "MD5sum": "eb667f79fa3546461b5c63604607fb7b", "Maintainer": "Diego Diez ", "Author": "Diego Diez", "Title": "GE CodeLink Human Inflammation 16 Bioarray annotation data (chip hi16cod)", "source.ver": "src/contrib/hi16cod.db_2.14.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "GE", "Suggests": [ "annotate", "RUnit" ], "Package": "hi16cod.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "ChipDb", "GEChip", "Homo_sapiens", "hi16cod" ], "Description": "GE CodeLink Human Inflammation 16 Bioarray annotation data (chip hi16cod) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hi16cod.db_2.14.0.zip" }, "ygs98probe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/ygs98probe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "f75d00f3c1d2b47f8659c882085b375b", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type ygs98", "source.ver": "src/contrib/ygs98probe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "ygs98probe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Saccharomyces_cerevisiae", "probe", "ygs98" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was YG-S98\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/ygs98probe_2.11.0.zip" }, "ye6100subccdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/ye6100subccdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "224b68e0f80aa3ba318dd9f4dbd95cd4", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "ye6100subccdf", "source.ver": "src/contrib/ye6100subccdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "ye6100subccdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Saccharomyces_cerevisiae", "cdf", "ye6100subc" ], "Description": "A package containing an environment representing the Ye6100subC.CDF file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/ye6100subccdf_2.11.0.zip" }, "porcinecdf": { "Depends": [ "utils", "AnnotationDbi" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/porcinecdf_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "75a1e8bddd1f2b47f8ec07e8883872e0", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project", "Title": "porcinecdf", "source.ver": "src/contrib/porcinecdf_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "porcinecdf", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Sus_scrofa", "cdf", "porcine" ], "Description": "A package containing an environment representing the Porcine.cdf file.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/porcinecdf_2.11.0.zip" }, "pd.ovigene.1.1.st": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.ovigene.1.1.st_3.8.0.tgz", "Version": "3.8.0", "hasINSTALL": false, "MD5sum": "f89df53a9e48b3a499c9a35a63b973e4", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for Affymetrix OviGene-1_1-st", "source.ver": "src/contrib/pd.ovigene.1.1.st_3.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.ovigene.1.1.st", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for Affymetrix OviGene-1_1-st", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.ovigene.1.1.st_3.8.0.zip" }, "pd.drosgenome1": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.drosgenome1_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "010fad3138bf0ae3505658d0b220f153", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name DrosGenome1", "source.ver": "src/contrib/pd.drosgenome1_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.drosgenome1", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name DrosGenome1", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.drosgenome1_1.8.0.zip" }, "pd.bovine": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.bovine_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "1e6a52aa97f73a35942093a455dcc8dc", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name Bovine", "source.ver": "src/contrib/pd.bovine_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.bovine", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name Bovine", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.bovine_1.8.0.zip" }, "gahgu133plus2.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.5.24)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/gahgu133plus2.db_2.2.0.tgz", "Version": "2.2.0", "dependsOnMe": [ "PREDAsampledata" ], "hasINSTALL": false, "MD5sum": "24b5856437fcb668ab06dacb4515ffb5", "Maintainer": "Francesco Ferrari ", "Author": "Francesco Ferrari, Stefania Bortoluzzi, Alessandro Coppe, Alexandra Sirota, Marilyn Safran, Michael Shmoish, Sergio Ferrari, Doron Lancet, Gian Antonio Danieli and Silvio Bicciato", "Title": "Genecards derived annotations for gahgu133plus2 custom probeset definitions", "source.ver": "src/contrib/gahgu133plus2.db_2.2.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Package": "gahgu133plus2.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "GeneCardsCustomSchema" ], "Description": "Genecards derived annotations for gahgu133plus2 custom probeset definitions assembled using data from the GeneCards database (www.genecards.org)", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/gahgu133plus2.db_2.2.0.zip" }, "mgug4121a.db": { "organism": "Mus musculus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.20.2)", "org.Mm.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/mgug4121a.db_2.8.1.tgz", "Version": "2.8.1", "hasINSTALL": false, "MD5sum": "7f4346a5f801543af709dccd8a90bea0", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Agilent Mouse annotation data (chip mgug4121a)", "source.ver": "src/contrib/mgug4121a.db_2.8.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Agilent", "Suggests": [ "annotate", "RUnit" ], "Package": "mgug4121a.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AgilentChip", "AnnotationData", "ChipDb", "Mus_musculus", "mgug4121a" ], "Description": "Agilent Mouse annotation data (chip mgug4121a) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/mgug4121a.db_2.8.1.zip" }, "rgug4131a.db": { "organism": "Rattus norvegicus", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.20.2)", "org.Rn.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/rgug4131a.db_2.8.1.tgz", "Version": "2.8.1", "hasINSTALL": false, "MD5sum": "00654a453bf17542cc551aa6d60dfc92", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Agilent \"Rat Genome, Whole\" annotation data (chip rgug4131a)", "source.ver": "src/contrib/rgug4131a.db_2.8.1.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Agilent", "Suggests": [ "annotate", "RUnit" ], "Package": "rgug4131a.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AgilentChip", "AnnotationData", "ChipDb", "Rattus_norvegicus", "rgug4131a" ], "Description": "Agilent \"Rat Genome, Whole\" annotation data (chip rgug4131a) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/rgug4131a.db_2.8.1.zip" }, "primeviewprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/primeviewprobe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "6281db37d98bf875fd4a4c5bcf414eac", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type primeview", "source.ver": "src/contrib/primeviewprobe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "primeviewprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "primeview", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was PrimeView\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/primeviewprobe_2.11.0.zip" }, "pd.zebgene.1.1.st": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.zebgene.1.1.st_3.8.0.tgz", "Version": "3.8.0", "hasINSTALL": false, "MD5sum": "3525bacf864101c7cb1875a34bd5a26d", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for Affymetrix ZebGene-1_1-st", "source.ver": "src/contrib/pd.zebgene.1.1.st_3.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.zebgene.1.1.st", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for Affymetrix ZebGene-1_1-st", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.zebgene.1.1.st_3.8.0.zip" }, "pd.mogene.1.1.st.v1": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.mogene.1.1.st.v1_3.8.0.tgz", "Version": "3.8.0", "hasINSTALL": false, "MD5sum": "ec7f7f62fa0cfc85a9e94cd1d4f97e54", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for Affymetrix MoGene-1_1-st-v1", "source.ver": "src/contrib/pd.mogene.1.1.st.v1_3.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.mogene.1.1.st.v1", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for Affymetrix MoGene-1_1-st-v1", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.mogene.1.1.st.v1_3.8.0.zip" }, "pd.hg.u133a": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.hg.u133a_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "742282c2b491ac8d069e9cf1b2d3cfe0", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name HG-U133A", "source.ver": "src/contrib/pd.hg.u133a_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.hg.u133a", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name HG-U133A", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.hg.u133a_1.8.0.zip" }, "hu6800probe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hu6800probe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "39b4cfa8204669974ea567a542255506", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type hu6800", "source.ver": "src/contrib/hu6800probe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "hu6800probe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "hu6800", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Hu6800\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hu6800probe_2.11.0.zip" }, "mgu74cprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/mgu74cprobe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "5fc59e0f5003f159a6eeed7ea2ad9b6d", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type mgu74c", "source.ver": "src/contrib/mgu74cprobe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "mgu74cprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "mgu74c", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was MG-U74C\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/mgu74cprobe_2.11.0.zip" }, "TxDb.Rnorvegicus.UCSC.rn4.ensGene": { "organism": "Rattus norvegicus", "Depends": [ "GenomicFeatures (>= 1.9.39)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/TxDb.Rnorvegicus.UCSC.rn4.ensGene_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "83c3346646994d3edd64e0f21d4b90bc", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Annotation package for TranscriptDb object(s)", "source.ver": "src/contrib/TxDb.Rnorvegicus.UCSC.rn4.ensGene_2.8.0.tar.gz", "Imports": [ "GenomicFeatures", "AnnotationDbi" ], "NeedsCompilation": "no", "Package": "TxDb.Rnorvegicus.UCSC.rn4.ensGene", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Genetics", "Rattus_norvegicus", "TranscriptDb" ], "Description": "Exposes an annotation databases generated from UCSC by exposing these as TranscriptDb objects", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/TxDb.Rnorvegicus.UCSC.rn4.ensGene_2.8.0.zip" }, "TxDb.Athaliana.BioMart.plantsmart14": { "organism": "Arabidopsis thaliana", "Depends": [ "GenomicFeatures (>= 1.9.39)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/TxDb.Athaliana.BioMart.plantsmart14_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "998b97732ba8f716d85f2533aa7ed71d", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Annotation package for TranscriptDb object(s)", "source.ver": "src/contrib/TxDb.Athaliana.BioMart.plantsmart14_2.8.0.tar.gz", "Imports": [ "GenomicFeatures", "AnnotationDbi" ], "NeedsCompilation": "no", "Package": "TxDb.Athaliana.BioMart.plantsmart14", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Arabidopsis_thaliana", "Genetics", "TranscriptDb" ], "Description": "Exposes an annotation databases generated from BioMart by exposing these as TranscriptDb objects", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/TxDb.Athaliana.BioMart.plantsmart14_2.8.0.zip" }, "targetscan.Mm.eg.db": { "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.18.3)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/targetscan.Mm.eg.db_0.6.0.tgz", "Version": "0.6.0", "hasINSTALL": false, "MD5sum": "3f6214272bdbee0392e963df3d308f87", "Maintainer": "James F. Reid ", "Author": "Gabor Csardi ", "Title": "TargetScan miRNA target predictions for mouse", "suggestsMe": [ "MmPalateMiRNA" ], "source.ver": "src/contrib/targetscan.Mm.eg.db_0.6.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "Package": "targetscan.Mm.eg.db", "License": "file LICENSE", "hasREADME": false, "biocViews": [ "AnnotationData", "FunctionalAnnotation" ], "Description": "TargetScan miRNA target predictions for mouse assembled using data from the TargetScan website. TargetScan predicts biological targets of miRNAs by searching for the presence of conserved 8mer and 7mer sites that match the seed region of each miRNA. Also identified are sites with mismatches in the seed region that are compensated by conserved 3' pairing. In mammals, predictions are ranked based on the predicted efficacy of targeting as calculated using the context scores of the sites.", "hasLICENSE": true, "win.binary.ver": "bin/windows/contrib/2.16/targetscan.Mm.eg.db_0.6.0.zip" }, "SNPlocs.Hsapiens.dbSNP.20090506": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.10)", "IRanges", "GenomicRanges", "BSgenome (>= 1.25.6)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/SNPlocs.Hsapiens.dbSNP.20090506_0.99.8.tgz", "Version": "0.99.8", "hasINSTALL": false, "MD5sum": "46669d54d387efee823874b6cf122f94", "Maintainer": "H. Pages ", "Author": "Herve Pages", "Title": "SNP locations for Homo sapiens (dbSNP Build 130)", "suggestsMe": [ "ind1KG" ], "source.ver": "src/contrib/SNPlocs.Hsapiens.dbSNP.20090506_0.99.8.tar.gz", "Imports": [ "methods", "utils", "IRanges", "GenomicRanges", "BSgenome" ], "NeedsCompilation": "no", "Suggests": [ "Biostrings", "BSgenome.Hsapiens.UCSC.hg18 (>= 1.3.19)" ], "Package": "SNPlocs.Hsapiens.dbSNP.20090506", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData", "Genetics", "Homo_sapiens" ], "Description": "SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 130. The source data files used for this package were created by NCBI on 5-6 May, 2009, and contain SNPs mapped to reference genome NCBI Build 36.1, which is identical to the hg18 genome from UCSC. Therefore, the SNPs in this package can be \"injected\" in BSgenome.Hsapiens.UCSC.hg18 and they will land at the correct location.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/SNPlocs.Hsapiens.dbSNP.20090506_0.99.8.zip" }, "pd.hg.u133b": { "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/pd.hg.u133b_1.8.0.tgz", "Version": "1.8.0", "hasINSTALL": false, "MD5sum": "2b774a3c3543ec71f28ef75a3829e16c", "Maintainer": "Benilton Carvalho ", "Author": "Benilton Carvalho", "Title": "Platform Design Info for The Manufacturer's Name HG-U133B", "source.ver": "src/contrib/pd.hg.u133b_1.8.0.tar.gz", "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "NeedsCompilation": "no", "Package": "pd.hg.u133b", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AnnotationData" ], "Description": "Platform Design Info for The Manufacturer's Name HG-U133B", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/pd.hg.u133b_1.8.0.zip" }, "hgu133aprobe": { "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 0.99.11)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hgu133aprobe_2.11.0.tgz", "Version": "2.11.0", "hasINSTALL": false, "MD5sum": "643c539bcd84f46b40b6c37b64dd9bc1", "Maintainer": "Biocore Data Team ", "Author": "The Bioconductor Project www.bioconductor.org", "Title": "Probe sequence data for microarrays of type hgu133a", "suggestsMe": [ "altcdfenvs", "Biostrings", "frmaTools" ], "source.ver": "src/contrib/hgu133aprobe_2.11.0.tar.gz", "NeedsCompilation": "no", "Package": "hgu133aprobe", "License": "LGPL", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "hgu133a", "probe" ], "Description": "This package was automatically created by package AnnotationForge version 0.99.11. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG-U133A\\_probe\\_tab.", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hgu133aprobe_2.11.0.zip" }, "hgu95b.db": { "organism": "Homo sapiens", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.19.35)", "org.Hs.eg.db (>= 2.8.0)" ], "hasNEWS": false, "mac.binary.leopard.ver": "bin/macosx/leopard/contrib/2.16/hgu95b.db_2.8.0.tgz", "Version": "2.8.0", "hasINSTALL": false, "MD5sum": "40b6a67eca46687d6903f980f630b784", "Maintainer": "Biocore Data Team ", "Author": "Marc Carlson", "Title": "Affymetrix Human Genome U95 Set annotation data (chip hgu95b)", "source.ver": "src/contrib/hgu95b.db_2.8.0.tar.gz", "Imports": [ "methods", "AnnotationDbi" ], "NeedsCompilation": "no", "manufacturer": "Affymetrix", "Suggests": [ "annotate", "RUnit" ], "Package": "hgu95b.db", "License": "Artistic-2.0", "hasREADME": false, "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Homo_sapiens", "hgu95b" ], "Description": "Affymetrix Human Genome U95 Set annotation data (chip hgu95b) assembled using data from public repositories", "hasLICENSE": false, "win.binary.ver": "bin/windows/contrib/2.16/hgu95b.db_2.8.0.zip" } }