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    "License": "LGPL (>= 2.1)",
    "MD5sum": "6737b2d95b667dc1171bba4293aaedfb",
    "NeedsCompilation": "no",
    "Title": "Data sets for FABIA (Factor Analysis for Bicluster Acquisition)",
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    "NeedsCompilation": "no",
    "Title": "DKFZ FACS example data",
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    "Title": "CAGE data from FANTOM3 and FANTOM4 projects",
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    "License": "GPL (>2)",
    "MD5sum": "c4be991ead957d8a8c185b3cb4410f8d",
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    "Title": "Illumina DASL example microarray data",
    "Description": "A subset of GSE17565 (April et al. 2009) containing 32 FFPE samples of Burkitts Lymphoma and Breast Adenocarcinoma, with a dilution series in technical duplicate.",
    "biocViews": [
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    "License": "LGPL",
    "MD5sum": "b3e96c7411a17aa45da7a0525e2a1792",
    "NeedsCompilation": "no",
    "Title": "exprSet for Karaman et al. (2003) fibroblasts data",
    "Description": "exprSet for Karaman et al. (2003) human, bonobo and gorilla fibroblasts data",
    "biocViews": [
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    "Author": "Sylvia Merk",
    "Maintainer": "Sylvia Merk <merk@ibe.med.uni-muenchen.de>",
    "source.ver": "src/contrib/fibroEset_1.4.9.tar.gz",
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    "License": "GPL-2",
    "MD5sum": "d30c3dab56ea7065ee26752fe2250c15",
    "NeedsCompilation": "no",
    "Title": "A data package containing two flowJo xml workspaces and associated fcs files for testing the flowWorkspace and openCyto packages.",
    "Description": "The necessary external data to run the flowWorkspace and openCyto vignette is found in this package.",
    "biocViews": [
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    "Author": "Greg Finak",
    "Maintainer": "Mike Jiang <wjiang2@fhcrc.org>",
    "source.ver": "src/contrib/flowWorkspaceData_1.99.9.tar.gz",
    "win.binary.ver": "bin/windows/contrib/2.16/flowWorkspaceData_1.99.9.zip",
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    "hasREADME": false,
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    "suggestsMe": [
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  "frmaExampleData": {
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    ],
    "License": "GPL (>= 2)",
    "MD5sum": "36a6a436af2039c25ec176e0720cd292",
    "NeedsCompilation": "no",
    "Title": "Frma Example Data",
    "Description": "Data files used by the examples in frma and frmaTools packages",
    "biocViews": [
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      "ExperimentData",
      "Homo_sapiens",
      "Microarray"
    ],
    "Author": "Matthew N. McCall <mmccall@jhsph.edu>",
    "Maintainer": "Matthew N. McCall <mmccall@jhsph.edu>",
    "source.ver": "src/contrib/frmaExampleData_0.99.5.tar.gz",
    "win.binary.ver": "bin/windows/contrib/2.16/frmaExampleData_0.99.5.zip",
    "mac.binary.ver": "bin/macosx/contrib/2.16/frmaExampleData_0.99.5.tgz",
    "hasREADME": false,
    "hasNEWS": false,
    "hasINSTALL": false,
    "hasLICENSE": false,
    "suggestsMe": [
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      "frmaTools"
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  "FunciSNP.data": {
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    "Version": "0.99.2",
    "Depends": [
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    "Imports": [
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    ],
    "License": "GPL-3",
    "MD5sum": "2ea1394e00ed614af76326fde361e713",
    "NeedsCompilation": "no",
    "Title": "Various data sets for use with the FunciSNP package",
    "Description": "Data sets needed for FunciSNP to integrate information from GWAS, 1000genomes and chromatin feature, in order to identify functional SNP in coding or non-coding regions.",
    "biocViews": [
      "Annotation",
      "DataImport",
      "DataRepresentation",
      "ExperimentData",
      "Infrastructure",
      "SequenceMatching"
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    "Author": "Simon G. Coetzee <simon@simoncoetzee.com> and Houtan Noushmehr, PhD <houtan@usp.br>",
    "Maintainer": "Simon G. Coetzee <scoetzee@gmail.com>",
    "URL": "http://coetzeeseq.usc.edu/publication/Coetzee_SG_et_al_2012/",
    "source.ver": "src/contrib/FunciSNP.data_0.99.2.tar.gz",
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    "mac.binary.ver": "bin/macosx/contrib/2.16/FunciSNP.data_0.99.2.tgz",
    "vignettes": [
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    "vignetteTitles": [
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    "hasREADME": false,
    "hasNEWS": true,
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    "hasLICENSE": false,
    "Rfiles": [
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  "gageData": {
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    "Depends": [
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    ],
    "Suggests": [
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    "License": "GPL (>=2.0)",
    "MD5sum": "9abec8bb3a62ed115ee42adc22aab3f0",
    "NeedsCompilation": "no",
    "Title": "Auxillary data for gage package",
    "Description": "This is a supportive data package for the software package, gage. However, the data supplied here are also useful for gene set or pathway analysis or microarray data analysis in general. In this package, we provide two demo microarray dataset: GSE16873 (a breast cancer dataset from GEO) and BMP6 (originally published as an demo dataset for GAGE, also registered as GSE13604 in GEO). This package also includes commonly used gene set data based on KEGG pathways and GO terms for major research species, including human, mouse, rat and budding yeast. Mapping data between common gene IDs for budding yeast are also included.",
    "biocViews": [
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      "ExperimentData"
    ],
    "Author": "Weijun Luo",
    "Maintainer": "Weijun Luo <luo_weijun@yahoo.com>",
    "source.ver": "src/contrib/gageData_2.0.2.tar.gz",
    "win.binary.ver": "bin/windows/contrib/2.16/gageData_2.0.2.zip",
    "mac.binary.ver": "bin/macosx/contrib/2.16/gageData_2.0.2.tgz",
    "hasREADME": false,
    "hasNEWS": true,
    "hasINSTALL": false,
    "hasLICENSE": false,
    "suggestsMe": [
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  "gaschYHS": {
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    "Version": "1.0.11",
    "Depends": [
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    "License": "Artistic-2.0",
    "MD5sum": "965d2bcf3feb7c316dacfdc9b4f49ae9",
    "NeedsCompilation": "no",
    "Title": "ExpressionSet for response of yeast to heat shock and other environmental stresses",
    "Description": "Data from PMID 11102521",
    "biocViews": [
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      "Yeast"
    ],
    "Author": "Audrey Gasch and colleagues",
    "Maintainer": "Vince Carey <stvjc@channing.harvard.edu>",
    "URL": "http://genome-www.stanford.edu/yeast_stress/data/rawdata/complete_dataset.txt",
    "source.ver": "src/contrib/gaschYHS_1.0.11.tar.gz",
    "win.binary.ver": "bin/windows/contrib/2.16/gaschYHS_1.0.11.zip",
    "mac.binary.ver": "bin/macosx/contrib/2.16/gaschYHS_1.0.11.tgz",
    "hasREADME": false,
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  "gatingMLData": {
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    "Version": "1.0.7",
    "Depends": [
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    "Suggests": [
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    "License": "GPL",
    "MD5sum": "5ad1ef143a154e12d8c23a20aab903eb",
    "NeedsCompilation": "no",
    "Title": "Data and XML files for GatingML Test suite",
    "Description": "Test data & XML files for Testing compliance with the GatingML 1.5 standards in package flowUtils.",
    "biocViews": [
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    "Author": "Nishant Gopalakrishnan",
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    "win.binary.ver": "bin/windows/contrib/2.16/gatingMLData_1.0.7.zip",
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  "gcspikelite": {
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    "License": "LGPL",
    "MD5sum": "c2564532e04a622115f9f1a05a2b6b00",
    "NeedsCompilation": "no",
    "Title": "Spike-in data for GC/MS data and methods within flagme",
    "Description": "Spike-in data for GC/MS data and methods within flagme",
    "biocViews": [
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      "MassSpectrometryData"
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    "Author": "Mark Robinson <mrobinson@wehi.edu.au>",
    "Maintainer": "Mark Robinson <mrobinson@wehi.edu.au>",
    "source.ver": "src/contrib/gcspikelite_1.0.9.tar.gz",
    "win.binary.ver": "bin/windows/contrib/2.16/gcspikelite_1.0.9.zip",
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    "hasREADME": false,
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    "dependsOnMe": [
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  "geneLenDataBase": {
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    "Version": "0.99.11",
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    "Imports": [
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    "License": "LGPL (>= 2)",
    "MD5sum": "6b7a6f4bd3e073b2e1364dd8881cc919",
    "NeedsCompilation": "no",
    "Title": "Lengths of mRNA transcripts for a number of genomes",
    "Description": "Length of mRNA transcripts for a number of genomes and gene ID formats, largely based on UCSC table browser",
    "biocViews": [
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      "HighThroughputSequencingData",
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    "Author": "Matthew Young",
    "Maintainer": "Matthew Young <myoung@wehi.edu.au>, Nadia Davidson <nadia.davidson@mcri.edu.au>",
    "source.ver": "src/contrib/geneLenDataBase_0.99.11.tar.gz",
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    "Enhances": [
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    "License": "LGPL",
    "MD5sum": "3817167fd420b4b6f1ea24408a2a9b63",
    "NeedsCompilation": "no",
    "Title": "all 90 hapmap CEU samples, 47K expression, 4mm SNP",
    "Description": "data exemplars dealing with hapmap SNP reports, GWAS, etc.",
    "biocViews": [
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    "Author": "VJ Carey <stvjc@channing.harvard.edu>",
    "Maintainer": "VJ Carey <stvjc@channing.harvard.edu>",
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      "ChIPpeakAnno",
      "Rsamtools(>= 1.5.35)",
      "cheung2010",
      "SNPlocs.Hsapiens.dbSNP.20120608",
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    "Suggests": [
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    "License": "Artistic-2.0",
    "MD5sum": "6b9945c61d7f1cf2bf08a841f0a0819c",
    "NeedsCompilation": "no",
    "Title": "support for tutorial on genetics of gene expression ISMB 2011",
    "Description": "various resources for genetics of expression with R/bioc",
    "Author": "VJ Carey <stvjc@channing.harvard.edu>",
    "Maintainer": "VJ Carey <stvjc@channing.harvard.edu>",
    "source.ver": "src/contrib/ggtut_0.0.44.tar.gz",
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    "mac.binary.ver": "bin/macosx/contrib/2.16/ggtut_0.0.44.tgz",
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      "vignettes/ggtut/inst/doc/extras.pdf",
      "vignettes/ggtut/inst/doc/tut11.pdf",
      "vignettes/ggtut/inst/doc/tut12.pdf"
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      "tut12.pdf"
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    "biocViews": [
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    "License": "LGPL",
    "MD5sum": "712f67e73561a3e8fd725e704a06ad4d",
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    "Title": "exprSets for golub leukemia data",
    "Description": "representation of public golub data with some covariate data of provenance unknown to the maintainer at present; now employs ExpressionSet format",
    "biocViews": [
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      "ExperimentData",
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    "Author": "Todd Golub <golub@wi.mit.edu>",
    "Maintainer": "Vince Carey <stvjc@channing.harvard.edu>",
    "source.ver": "src/contrib/golubEsets_1.4.13.tar.gz",
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    "suggestsMe": [
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      "RDRToolbox",
      "twilight"
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    "dependsOnMe": [
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  "GSVAdata": {
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    "License": "GPL (>= 2)",
    "MD5sum": "13e99fc5abf4cdb7cb5dd447e29c8f50",
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    "MD5sum": "ae41e0fcc47c38243ba28401374de076",
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    "Title": "RNA-Seq data of primary cultures of parathyroid tumors by Haglund et al., J Clin Endocrinol Metab 2012.",
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    "Title": "SummarizedExperiment for RNA-Seq of primary cultures of parathyroid tumors by Haglund et al., J Clin Endocrinol Metab 2012.",
    "Description": "This package provides SummarizedExperiment objects of read counts in genes and exonic parts for paired-end RNA-Seq data from experiments on primary cultures of parathyroid tumors. The data were presented in the article \"Evidence of a Functional Estrogen Receptor in Parathyroid Adenomas\" by Haglund F, Ma R, Huss M, Sulaiman L, Lu M, Nilsson IL, Hoog A, Juhlin CC, Hartman J, Larsson C, J Clin Endocrinol Metab. jc.2012-2484, Epub 2012 Sep 28, PMID: 23024189.  The sequencing was performed on tumor cultures from 4 patients at 2 time points over 3 conditions (DPN, OHT and control).  One control sample was omitted by the paper authors due to low quality. The package vignette describes the creation of the object from raw sequencing data provided by NCBI Gene Expression Omnibus under accession number GSE37211.  The gene and exon features are the GRCh37 Ensembl annotations, release 69.",
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    "Description": "This package provides per-exon and per-gene read counts computed for selected genes from RNA-seq data that were presented in the article \"Conservation of an RNA regulatory map between Drosophila and mammals\" by Brooks AN, Yang L, Duff MO, Hansen KD, Park JW, Dudoit S, Brenner SE, Graveley BR, Genome Res. 2011 Feb;21(2):193-202, Epub 2010 Oct 4, PMID: 20921232. The experiment studied the effect of RNAi knockdown of Pasilla, the Drosophila melanogaster ortholog of mammalian NOVA1 and NOVA2, on the transcriptome.  The package vignette describes how the data provided here were derived from the RNA-Seq read sequence data that is provided by NCBI Gene Expression Omnibus under accession numbers GSM461176 to GSM461181",
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