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The data comes from Fletcher et al. (Nature Comms 4:2464, 2013) where further details about the background and the experimental design of the study can be found.", "biocViews": [ "Cancer", "ExperimentData", "RNAExpressionData" ], "Author": "Mauro Castro, Michael Fletcher, Florian Markowetz and Kerstin Meyer.", "Maintainer": "Mauro Castro ", "URL": "http://dx.doi.org/10.1038/ncomms3464", "source.ver": "src/contrib/Fletcher2013a_1.1.1.tar.gz", "win.binary.ver": "bin/windows/contrib/3.1/Fletcher2013a_1.1.1.zip", "mac.binary.ver": "bin/macosx/contrib/3.1/Fletcher2013a_1.1.1.tgz", "mac.binary.mavericks.ver": "bin/macosx/mavericks/contrib/3.1/Fletcher2013a_1.1.1.tgz", "vignettes": [ "vignettes/Fletcher2013a/inst/doc/Fletcher2013a.pdf" ], "vignetteTitles": [ "Main vignette:Fletcher2013a" ], "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rfiles": [ "vignettes/Fletcher2013a/inst/doc/Fletcher2013a.R" ], "dependsOnMe": [ "Fletcher2013b" ] }, "Fletcher2013b": { "Package": "Fletcher2013b", "Version": 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However, the data supplied here are also useful for gene set or pathway analysis or microarray data analysis in general. In this package, we provide two demo microarray dataset: GSE16873 (a breast cancer dataset from GEO) and BMP6 (originally published as an demo dataset for GAGE, also registered as GSE13604 in GEO). This package also includes commonly used gene set data based on KEGG pathways and GO terms for major research species, including human, mouse, rat and budding yeast. 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"suggestsMe": [ "arrayMvout" ] }, "NCIgraphData": { "Package": "NCIgraphData", "Version": "1.1.1", "Depends": [ "R (>= 2.10.0)" ], "Suggests": [ "Rgraphviz" ], "License": "GPL-3", "MD5sum": "fa5aa864924e4a7103730d6fb2138170", "NeedsCompilation": "no", "Title": "Data for the NCIgraph software package", "Description": "Provides pathways from the NCI Pathways Database as R graph objects", "biocViews": [ "Bioinformatics", "ExperimentData", "GraphsAndNetworks" ], "Author": "Laurent Jacob", "Maintainer": "Laurent Jacob ", "source.ver": "src/contrib/NCIgraphData_1.1.1.tar.gz", "win.binary.ver": "bin/windows/contrib/3.1/NCIgraphData_1.1.1.zip", "mac.binary.ver": "bin/macosx/contrib/3.1/NCIgraphData_1.1.1.tgz", "mac.binary.mavericks.ver": "bin/macosx/mavericks/contrib/3.1/NCIgraphData_1.1.1.tgz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false }, "Neve2006": { "Package": "Neve2006", "Version": "0.3.1", "Depends": [ "R (>= 2.14.0)", "tools", "methods", "utils", 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The data were presented in the article \"Evidence of a Functional Estrogen Receptor in Parathyroid Adenomas\" by Haglund F, Ma R, Huss M, Sulaiman L, Lu M, Nilsson IL, Hoog A, Juhlin CC, Hartman J, Larsson C, J Clin Endocrinol Metab. jc.2012-2484, Epub 2012 Sep 28, PMID: 23024189. The sequencing was performed on tumor cultures from 4 patients at 2 time points over 3 conditions (DPN, OHT and control). One control sample was omitted by the paper authors due to low quality. The package vignette describes the creation of objects from raw sequencing data provided by NCBI Gene Expression Omnibus under accession number GSE37211. 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The data were presented in the article \"Evidence of a Functional Estrogen Receptor in Parathyroid Adenomas\" by Haglund F, Ma R, Huss M, Sulaiman L, Lu M, Nilsson IL, Hoog A, Juhlin CC, Hartman J, Larsson C, J Clin Endocrinol Metab. jc.2012-2484, Epub 2012 Sep 28, PMID: 23024189. The sequencing was performed on tumor cultures from 4 patients at 2 time points over 3 conditions (DPN, OHT and control). One control sample was omitted by the paper authors due to low quality. The package vignette describes the creation of the object from raw sequencing data provided by NCBI Gene Expression Omnibus under accession number GSE37211. 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The experiment studied the effect of RNAi knockdown of Pasilla, the Drosophila melanogaster ortholog of mammalian NOVA1 and NOVA2, on the transcriptome. 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