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This data corresponds to the first block of a 12 block array image (001030_08_1.GEL) in the first data set (2000095918 A) in the first experiment (CEM LAI vs HI-LAI 24hr). There are two data sets, which are part of a dye-swap experiment with replicates, representing the Cy3 (green) absorption intensities for channel 1 (hiv1raw) and the Cy5 (red) absorption intensities for channel 2 (hiv2raw).", "biocViews": [ "ExperimentData", "HIVData", "MicroarrayData", "TwoChannelData" ], "Author": "Dr. Angelique van't Wout, Department of Microbiology, University of Washington", "Maintainer": "Chris Fraley ", "URL": "http://expression.microslu.washington.edu/expression/vantwoutjvi2002.html", "git_url": "https://git.bioconductor.org/packages/HIVcDNAvantWout03", "git_branch": "RELEASE_3_14", "git_last_commit": "e797be4", "git_last_commit_date": "2021-10-26", "Date/Publication": "2021-10-30", "source.ver": "src/contrib/HIVcDNAvantWout03_1.34.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "dependencyCount": "0", "Rank": 359 }, "HMP16SData": { "Package": "HMP16SData", "Version": "1.14.0", "Depends": [ "R (>= 4.1.0)", "SummarizedExperiment" ], "Imports": [ "AnnotationHub", "ExperimentHub", "S4Vectors", "assertthat", "dplyr", "kableExtra", "knitr", "magrittr", "methods", "readr", "stringr", "tibble", "utils" ], "Suggests": [ "Biobase", "BiocCheck", "BiocManager", "BiocStyle", "circlize", "cowplot", "dendextend", "devtools", "ggplot2", "gridExtra", "haven", "phyloseq", "rmarkdown", "roxygen2", "stats", "testthat", "tidyr" ], "License": "Artistic-2.0", "MD5sum": "821c19f80d2870744eee0c416532c493", "NeedsCompilation": "no", "Title": "16S rRNA Sequencing Data from the Human Microbiome Project", "Description": "HMP16SData is a Bioconductor ExperimentData package of the Human Microbiome Project (HMP) 16S rRNA sequencing data for variable regions 1–3 and 3–5. Raw data files are provided in the package as downloaded from the HMP Data Analysis and Coordination Center. Processed data is provided as SummarizedExperiment class objects via ExperimentHub.", "biocViews": [ "ExperimentData", "ExperimentHub", "Homo_sapiens_Data", "MicrobiomeData", "ReproducibleResearch", "SequencingData" ], "Author": "Lucas schiffer [aut, cre] (), Rimsha Azhar [aut], Marcel Ramos [ctb], Ludwig Geistlinger [ctb], Levi Waldron [aut]", "Maintainer": "Lucas schiffer ", "URL": "https://github.com/waldronlab/HMP16SData", "VignetteBuilder": "knitr", "BugReports": "https://github.com/waldronlab/HMP16SData/issues", "git_url": "https://git.bioconductor.org/packages/HMP16SData", "git_branch": "RELEASE_3_14", "git_last_commit": "557973d", "git_last_commit_date": "2021-10-26", "Date/Publication": "2021-10-30", "source.ver": "src/contrib/HMP16SData_1.14.0.tar.gz", "vignettes": [ "vignettes/HMP16SData/inst/doc/HMP16SData.html" ], "vignetteTitles": [ "HMP16SData" ], "hasREADME": false, "hasNEWS": true, "hasINSTALL": false, "hasLICENSE": false, "Rfiles": [ "vignettes/HMP16SData/inst/doc/HMP16SData.R" ], "suggestsMe": [ "benchdamic" ], "dependencyCount": "129", "Rank": 114 }, "HMP2Data": { "Package": "HMP2Data", "Version": "1.8.0", "Depends": [ "R (>= 3.6.0)" ], "Imports": [ "AnnotationHub", "assertthat", "dplyr", "ExperimentHub", "kableExtra", "knitr", "magrittr", "methods", "readr", "S4Vectors", "SummarizedExperiment", "phyloseq", "MultiAssayExperiment", "data.table" ], "Suggests": [ "Biobase", "BiocCheck", "BiocManager", "BiocStyle", "cowplot", "devtools", "ggplot2", "gridExtra", "haven", "rmarkdown", "roxygen2", "stats", "testthat", "tibble", "UpSetR" ], "License": "Artistic-2.0", "MD5sum": "c25eb91aface46d0d569bbac6d3b4abe", "NeedsCompilation": "no", "Title": "16s rRNA sequencing data from the Human Microbiome Project 2", "Description": "HMP2Data is a Bioconductor package of the Human Microbiome Project 2 (HMP2) 16S rRNA sequencing data. 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