{ "adme16cod.db": { "Package": "adme16cod.db", "Version": "3.4.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.31.18)", "org.Rn.eg.db (>= 3.2.1)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "3902516a40a503302ef732143b2394b9", "NeedsCompilation": "no", "Title": "Codelink ADME Rat 16-Assay Bioarray annotation data (chip adme16cod)", "Description": "Codelink ADME Rat 16-Assay Bioarray annotation data (chip adme16cod) assembled using data from public repositories", "biocViews": [ "AnnotationData", "ChipDb", "CodelinkChip", "Rattus_norvegicus", "adme16cod" ], "Author": "Diego Diez", "Maintainer": "Diego Diez ", "organism": "Rattus norvegicus", "manufacturer": "Codelink", "source.ver": "src/contrib/adme16cod.db_3.4.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 359 }, "ag.db": { "Package": "ag.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.At.tair.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "e5913da38fe4487202306cacd885840d", "NeedsCompilation": "no", "Title": "Affymetrix Arabidopsis Genome Array annotation data (chip ag)", "Description": "Affymetrix Arabidopsis Genome Array annotation data (chip ag) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "Arabidopsis_thaliana", "ChipDb", "ag" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Arabidopsis thaliana", "manufacturer": "Affymetrix", "source.ver": "src/contrib/ag.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 319 }, "agcdf": { "Package": "agcdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "5dd14bc6a6d2729f5e7b170105c78e48", "NeedsCompilation": "no", "Title": "agcdf", "Description": "A package containing an environment representing the AG.CDF file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Arabidopsis_thaliana", "ag", "cdf" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/agcdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 396 }, "agprobe": { "Package": "agprobe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "08f7527d4c8a30d8b2f86016a53f075a", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type ag", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was AG\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Arabidopsis_thaliana", "ag", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/agprobe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 529 }, "AHCytoBands": { "Package": "AHCytoBands", "Version": "0.99.0", "Depends": [ "R (>= 3.2.2)", "methods" ], "License": "Artistic-2.0", "MD5sum": "87b801fe5699cae422a661711272c0a2", "NeedsCompilation": "no", "Title": "CytoBands for AnnotationHub", "Description": "Supplies AnnotationHub with CytoBand information from UCSC. There is a track for each major organism. Giemsa-stained bands are commonly used to decorate chromosomal overviews in visualizations of genomic data.", "biocViews": [ "AnnotationData", "DataImport" ], "Author": "Michael Lawrence", "Maintainer": "Michael Lawrence ", "source.ver": "src/contrib/AHCytoBands_0.99.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 142 }, "AHEnsDbs": { "Package": "AHEnsDbs", "Version": "1.0.6", "Depends": [ "R (>= 3.4)", "methods", "ensembldb (>= 1.99.10)" ], "Imports": [ "AnnotationHubData (>= 1.5.24)" ], "Suggests": [ "BiocStyle", "knitr", "AnnotationHub (>= 2.7.13)" ], "License": "Artistic-2.0", "MD5sum": "4803f85e28c123a024b78ee7c2d19997", "NeedsCompilation": "no", "Title": "EnsDbs for AnnotationHub", "Description": "Supplies AnnotationHub with EnsDb Ensembl-based annotation databases for all species. EnsDb SQLite databases are generated separately from Ensembl MySQL databases using functions from the ensembldb package employing the Ensembl Perl API.", "biocViews": [ "AnnotationData", "Coverage", "DataImport", "Sequencing" ], "Author": "Johannes Rainer", "Maintainer": "Johannes Rainer ", "VignetteBuilder": "knitr", "source.ver": "src/contrib/AHEnsDbs_1.0.6.tar.gz", "vignettes": [ "vignettes/AHEnsDbs/inst/doc/creating-EnsDbs.html" ], "vignetteTitles": [ "Provide EnsDb databases for AnnotationHub" ], "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rfiles": [ "vignettes/AHEnsDbs/inst/doc/creating-EnsDbs.R" ], "Rank": 779 }, "alternativeSplicingEvents.hg19": { "Package": "alternativeSplicingEvents.hg19", "Version": "1.0.1", "Imports": [ "AnnotationHub" ], "Suggests": [ "data.frame", "dplyr", "GenomicRanges", "S4Vectors" ], "License": "MIT + file LICENSE", "MD5sum": "3e694353233e7d5d3abd22bfb5887513", "NeedsCompilation": "no", "Title": "Alternative splicing event annotation for Human (hg19)", "Description": "Data frame containing alternative splicing events. The splicing events were compiled from the annotation files used by the alternative splicing quantification tools MISO, VAST-TOOLS, SUPPA and rMATS.", "Author": "Nuno Agostinho", "Maintainer": "Nuno Agostinho ", "URL": "https://github.com/nuno-agostinho/alternativeSplicingEvents.hg19", "BugReports": "https://github.com/nuno-agostinho/alternativeSplicingEvents.hg19/issues", "source.ver": "src/contrib/alternativeSplicingEvents.hg19_1.0.1.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": true, "Rank": 529, "biocViews": [ "AnnotationData" ] }, "alternativeSplicingEvents.hg38": { "Package": "alternativeSplicingEvents.hg38", "Version": "1.0.1", "Imports": [ "AnnotationHub" ], "Suggests": [ "dplyr", "GenomicRanges", "S4Vectors" ], "License": "MIT + file LICENSE", "MD5sum": "9ce2e10cfe00ec4451670e1fd18d2e37", "NeedsCompilation": "no", "Title": "Alternative splicing event annotation for Human (hg38)", "Description": "Data frame containing alternative splicing events. The splicing events were compiled from the annotation files used by the alternative splicing quantification tools MISO, VAST-TOOLS, SUPPA and rMATS.", "Author": "Nuno Agostinho", "Maintainer": "Nuno Agostinho ", "URL": "https://github.com/nuno-agostinho/alternativeSplicingEvents.hg38", "BugReports": "https://github.com/nuno-agostinho/alternativeSplicingEvents.hg38/issues", "source.ver": "src/contrib/alternativeSplicingEvents.hg38_1.0.1.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": true, "Rank": 909, "biocViews": [ "AnnotationData" ] }, "anopheles.db0": { "Package": "anopheles.db0", "Version": "3.6.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.41.4)" ], "Imports": [ "methods", "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "ba990b0a0a5afa64190346ea987ace88", "NeedsCompilation": "no", "Title": "Base Level Annotation databases for anopheles", "Description": "Base annotation databases for anopheles, intended ONLY to be used by AnnotationDbi to produce regular annotation packages.", "biocViews": [ "AnnotationData", "Anopheles_gambiae", "db0" ], "Author": "Bioconductor Core Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Anopheles gambiae", "source.ver": "src/contrib/anopheles.db0_3.6.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "arabidopsis.db0": { "Package": "arabidopsis.db0", "Version": "3.6.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.41.4)" ], "Imports": [ "methods", "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "da33573f1f8b57d23b0ea0a1a7933d1f", "NeedsCompilation": "no", "Title": "Base Level Annotation databases for arabidopsis", "Description": "Base annotation databases for arabidopsis, intended ONLY to be used by AnnotationDbi to produce regular annotation packages.", "biocViews": [ "AnnotationData", "Arabidopsis_thaliana", "db0" ], "Author": "Bioconductor Core Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Arabidopsis thaliana", "source.ver": "src/contrib/arabidopsis.db0_3.6.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 319 }, "ath1121501.db": { "Package": "ath1121501.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.At.tair.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "ff9977848321463b27a379ed31fffbc3", "NeedsCompilation": "no", "Title": "Affymetrix Arabidopsis ATH1 Genome Array annotation data (chip ath1121501)", "Description": "Affymetrix Arabidopsis ATH1 Genome Array annotation data (chip ath1121501) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "Arabidopsis_thaliana", "ChipDb", "ath1121501" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Arabidopsis thaliana", "manufacturer": "Affymetrix", "source.ver": "src/contrib/ath1121501.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 104 }, "ath1121501cdf": { "Package": "ath1121501cdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "8b63798143219b7c1c2666a91a1a2440", "NeedsCompilation": "no", "Title": "ath1121501cdf", "Description": "A package containing an environment representing the ATH1-121501.CDF file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Arabidopsis_thaliana", "ath1121501", "cdf" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/ath1121501cdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 113, "dependsOnMe": [ "XhybCasneuf" ] }, "ath1121501probe": { "Package": "ath1121501probe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "eeeae5e6550bb472ba3419d71bbd7dfb", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type ath1121501", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was ATH1-121501\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Arabidopsis_thaliana", "ath1121501", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/ath1121501probe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 217 }, "barley1cdf": { "Package": "barley1cdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "16a2ca83f550518756d9fa3273672157", "NeedsCompilation": "no", "Title": "barley1cdf", "Description": "A package containing an environment representing the Barley1.CDF file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Hordeum_vulgare", "barley1", "cdf" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/barley1cdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 396 }, "barley1probe": { "Package": "barley1probe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "80595d8ecf83ba83ea84a722a24ab474", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type barley1", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Barley1\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Hordeum_vulgare", "barley1", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/barley1probe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "bovine.db": { "Package": "bovine.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Bt.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "0006dd79279fa1bf69a275e0586f2197", "NeedsCompilation": "no", "Title": "Affymetrix bovine annotation data (chip bovine)", "Description": "Affymetrix bovine annotation data (chip bovine) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "Bos_taurus", "ChipDb", "bovine" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Bos taurus", "manufacturer": "Affymetrix", "source.ver": "src/contrib/bovine.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 183 }, "bovine.db0": { "Package": "bovine.db0", "Version": "3.6.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.41.4)" ], "Imports": [ "methods", "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "a655b33449f6de0ad4e0abf0a2ca91ea", "NeedsCompilation": "no", "Title": "Base Level Annotation databases for bovine", "Description": "Base annotation databases for bovine, intended ONLY to be used by AnnotationDbi to produce regular annotation packages.", "biocViews": [ "AnnotationData", "Bos_taurus", "db0" ], "Author": "Bioconductor Core Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Bos taurus", "source.ver": "src/contrib/bovine.db0_3.6.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "bovinecdf": { "Package": "bovinecdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "e155fc7d5f84ee420d9b250a639af305", "NeedsCompilation": "no", "Title": "bovinecdf", "Description": "A package containing an environment representing the Bovine.cdf file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Bos_taurus", "bovine", "cdf" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/bovinecdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 233 }, "bovineprobe": { "Package": "bovineprobe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "9f9e25fc8c7a76acf541745b7c09748b", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type bovine", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Bovine\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Bos_taurus", "bovine", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/bovineprobe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 396 }, "BSgenome.Alyrata.JGI.v1": { "Package": "BSgenome.Alyrata.JGI.v1", "Version": "1.0.0", "Depends": [ "BSgenome (>= 1.19.5)" ], "Imports": [ "BSgenome" ], "License": "Artistic-2.0", "MD5sum": "2119e78ebb1957fd55ab186b167e0995", "NeedsCompilation": "no", "Title": "Arabidopsis lyrata full genome (JGI version V1.0)", "Description": "Arabidopsis lyrata 8x Release [project ID 4002920] as provided by JGI ( snapshot from March 24, 2011) and stored in Biostrings objects.", "biocViews": [ "Alyrata", "AnnotationData", "Genetics" ], "Author": "Jian-Feng Mao and Ya-Long Guo, with acknowledgement to Detlef Weigel", "Maintainer": "Jian-Feng Mao ", "organism": "Arabidopsis lyrata", "source.ver": "src/contrib/BSgenome.Alyrata.JGI.v1_1.0.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "BSgenome.Amellifera.BeeBase.assembly4": { "Package": "BSgenome.Amellifera.BeeBase.assembly4", "Version": "1.4.0", "Depends": [ "BSgenome (>= 1.33.5)" ], "Imports": [ "BSgenome" ], "License": "Artistic-2.0", "MD5sum": "77495ee5eba48fe52902c9cc4f9ba7cc", "NeedsCompilation": "no", "Title": "Full genome sequences for Apis mellifera (BeeBase assembly4)", "Description": "iFull genome sequences for Apis mellifera (Honey Bee) as provided by BeeBase (assembly4, Feb. 2008) and stored in Biostrings objects.", "biocViews": [ "AnnotationData", "Apis_mellifera", "BSgenome", "Genetics" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Apis mellifera", "source.ver": "src/contrib/BSgenome.Amellifera.BeeBase.assembly4_1.4.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 359 }, "BSgenome.Amellifera.UCSC.apiMel2": { "Package": "BSgenome.Amellifera.UCSC.apiMel2", "Version": "1.4.0", "Depends": [ "BSgenome (>= 1.33.5)" ], "Imports": [ "BSgenome" ], "License": "Artistic-2.0", "MD5sum": "436ddf54868906e7d1135369d41a2ffe", "NeedsCompilation": "no", "Title": "Full genome sequences for Apis mellifera (UCSC version apiMel2)", "Description": "Full genome sequences for Apis mellifera (Honey Bee) as provided by UCSC (apiMel2, Jan. 2005) and stored in Biostrings objects.", "biocViews": [ "AnnotationData", "Apis_mellifera", "BSgenome", "Genetics" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Apis mellifera", "source.ver": "src/contrib/BSgenome.Amellifera.UCSC.apiMel2_1.4.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "dependsOnMe": [ "BSgenome.Amellifera.UCSC.apiMel2.masked" ], "importsMe": [ "BSgenome.Amellifera.UCSC.apiMel2.masked" ], "Rank": 458 }, "BSgenome.Amellifera.UCSC.apiMel2.masked": { "Package": "BSgenome.Amellifera.UCSC.apiMel2.masked", "Version": "1.3.99", "Depends": [ "BSgenome (>= 1.31.8)", "BSgenome.Amellifera.UCSC.apiMel2" ], "Imports": [ "BSgenome", "BSgenome.Amellifera.UCSC.apiMel2" ], "License": "Artistic-2.0", "MD5sum": "e7a7ff8cfce8e239b22116855456f23d", "NeedsCompilation": "no", "Title": "Full masked genome sequences for Apis mellifera (UCSC version apiMel2)", "Description": "Full genome sequences for Apis mellifera (Honey Bee) as provided by UCSC (apiMel2, Jan. 2005) and stored in Biostrings objects. The sequences are the same as in BSgenome.Amellifera.UCSC.apiMel2, except that each of them has the 3 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), and (3) the mask of repeats from RepeatMasker (RM mask). Only the AGAPS and AMB masks are \"active\" by default.", "biocViews": [ "AnnotationData", "Apis_mellifera", "BSgenome", "Genetics" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Apis mellifera", "source.ver": "src/contrib/BSgenome.Amellifera.UCSC.apiMel2.masked_1.3.99.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 591 }, "BSgenome.Athaliana.TAIR.04232008": { "Package": "BSgenome.Athaliana.TAIR.04232008", "Version": "1.3.1000", "Depends": [ "BSgenome (>= 1.33.5)" ], "Imports": [ "BSgenome" ], "License": "Artistic-2.0", "MD5sum": "6b8a31a228dbcf4468974f5ec1d98467", "NeedsCompilation": "no", "Title": "Full genome sequences for Arabidopsis thaliana (TAIR version from April 23, 2008)", "Description": "Full genome sequences for Arabidopsis thaliana as provided by TAIR (snapshot from April 23, 2008) and stored in Biostrings objects.", "biocViews": [ "AnnotationData", "Arabidopsis_thaliana", "BSgenome", "Genetics" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Arabidopsis thaliana", "source.ver": "src/contrib/BSgenome.Athaliana.TAIR.04232008_1.3.1000.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 359 }, "BSgenome.Athaliana.TAIR.TAIR9": { "Package": "BSgenome.Athaliana.TAIR.TAIR9", "Version": "1.3.1000", "Depends": [ "BSgenome (>= 1.33.5)" ], "Imports": [ "BSgenome" ], "License": "Artistic-2.0", "MD5sum": "8c6709a5f544616d59f4d39aac5787a7", "NeedsCompilation": "no", "Title": "Full genome sequences for Arabidopsis thaliana (TAIR9)", "Description": "Full genome sequences for Arabidopsis thaliana as provided by TAIR (TAIR9 Genome Release) and stored in Biostrings objects. Note that TAIR10 is an \"annotation release\" based on the same genome assembly as TAIR9.", "biocViews": [ "AnnotationData", "Arabidopsis_thaliana", "BSgenome", "Genetics" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Arabidopsis thaliana", "source.ver": "src/contrib/BSgenome.Athaliana.TAIR.TAIR9_1.3.1000.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 137, "suggestsMe": [ "waveTiling" ] }, "BSgenome.Btaurus.UCSC.bosTau3": { "Package": "BSgenome.Btaurus.UCSC.bosTau3", "Version": "1.4.0", "Depends": [ "BSgenome (>= 1.33.5)" ], "Imports": [ "BSgenome" ], "Suggests": [ "GenomicFeatures" ], "License": "Artistic-2.0", "MD5sum": "fe6c4d5853f91c3db3e716ddbc773580", "NeedsCompilation": "no", "Title": "Full genome sequences for Bos taurus (UCSC version bosTau3)", "Description": "Full genome sequences for Bos taurus (Cow) as provided by UCSC (bosTau3, Aug. 2006) and stored in Biostrings objects.", "biocViews": [ "AnnotationData", "BSgenome", "Bos_taurus", "Genetics" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Bos taurus", "source.ver": "src/contrib/BSgenome.Btaurus.UCSC.bosTau3_1.4.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "dependsOnMe": [ "BSgenome.Btaurus.UCSC.bosTau3.masked" ], "importsMe": [ "BSgenome.Btaurus.UCSC.bosTau3.masked" ], "Rank": 396 }, "BSgenome.Btaurus.UCSC.bosTau3.masked": { "Package": "BSgenome.Btaurus.UCSC.bosTau3.masked", "Version": "1.3.99", "Depends": [ "BSgenome (>= 1.31.8)", "BSgenome.Btaurus.UCSC.bosTau3" ], "Imports": [ "BSgenome", "BSgenome.Btaurus.UCSC.bosTau3" ], "License": "Artistic-2.0", "MD5sum": "50f7da5907cbe0d08183dc7161a8ca56", "NeedsCompilation": "no", "Title": "Full masked genome sequences for Bos taurus (UCSC version bosTau3)", "Description": "Full genome sequences for Bos taurus (Cow) as provided by UCSC (bosTau3, Aug. 2006) and stored in Biostrings objects. The sequences are the same as in BSgenome.Btaurus.UCSC.bosTau3, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are \"active\" by default.", "biocViews": [ "AnnotationData", "BSgenome", "Bos_taurus", "Genetics" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Bos taurus", "source.ver": "src/contrib/BSgenome.Btaurus.UCSC.bosTau3.masked_1.3.99.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 726 }, "BSgenome.Btaurus.UCSC.bosTau4": { "Package": "BSgenome.Btaurus.UCSC.bosTau4", "Version": "1.4.0", "Depends": [ "BSgenome (>= 1.33.5)" ], "Imports": [ "BSgenome" ], "Suggests": [ "GenomicFeatures" ], "License": "Artistic-2.0", "MD5sum": "162cd253c719e347df5748ebb407a191", "NeedsCompilation": "no", "Title": "Full genome sequences for Bos taurus (UCSC version bosTau4)", "Description": "Full genome sequences for Bos taurus (Cow) as provided by UCSC (bosTau4, Oct. 2007) and stored in Biostrings objects.", "biocViews": [ "AnnotationData", "BSgenome", "Bos_taurus", "Genetics" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Bos taurus", "source.ver": "src/contrib/BSgenome.Btaurus.UCSC.bosTau4_1.4.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "dependsOnMe": [ "BSgenome.Btaurus.UCSC.bosTau4.masked" ], "importsMe": [ "BSgenome.Btaurus.UCSC.bosTau4.masked" ], "Rank": 591 }, "BSgenome.Btaurus.UCSC.bosTau4.masked": { "Package": "BSgenome.Btaurus.UCSC.bosTau4.masked", "Version": "1.3.99", "Depends": [ "BSgenome (>= 1.31.8)", "BSgenome.Btaurus.UCSC.bosTau4" ], "Imports": [ "BSgenome", "BSgenome.Btaurus.UCSC.bosTau4" ], "License": "Artistic-2.0", "MD5sum": "7c5294349c7061adfb3948bc5659afeb", "NeedsCompilation": "no", "Title": "Full masked genome sequences for Bos taurus (UCSC version bosTau4)", "Description": "Full genome sequences for Bos taurus (Cow) as provided by UCSC (bosTau4, Oct. 2007) and stored in Biostrings objects. The sequences are the same as in BSgenome.Btaurus.UCSC.bosTau4, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are \"active\" by default.", "biocViews": [ "AnnotationData", "BSgenome", "Bos_taurus", "Genetics" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Bos taurus", "source.ver": "src/contrib/BSgenome.Btaurus.UCSC.bosTau4.masked_1.3.99.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "BSgenome.Btaurus.UCSC.bosTau6": { "Package": "BSgenome.Btaurus.UCSC.bosTau6", "Version": "1.4.0", "Depends": [ "BSgenome (>= 1.33.5)" ], "Imports": [ "BSgenome" ], "Suggests": [ "GenomicFeatures" ], "License": "Artistic-2.0", "MD5sum": "b22391e0678fc3743daa4b77ecc55f66", "NeedsCompilation": "no", "Title": "Full genome sequences for Bos taurus (UCSC version bosTau6)", "Description": "Full genome sequences for Bos taurus (Cow) as provided by UCSC (bosTau6, Nov. 2009) and stored in Biostrings objects.", "biocViews": [ "AnnotationData", "BSgenome", "Bos_taurus", "Genetics" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Bos taurus", "source.ver": "src/contrib/BSgenome.Btaurus.UCSC.bosTau6_1.4.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "dependsOnMe": [ "BSgenome.Btaurus.UCSC.bosTau6.masked" ], "importsMe": [ "BSgenome.Btaurus.UCSC.bosTau6.masked" ], "Rank": 306 }, "BSgenome.Btaurus.UCSC.bosTau6.masked": { "Package": "BSgenome.Btaurus.UCSC.bosTau6.masked", "Version": "1.3.99", "Depends": [ "BSgenome (>= 1.31.8)", "BSgenome.Btaurus.UCSC.bosTau6" ], "Imports": [ "BSgenome", "BSgenome.Btaurus.UCSC.bosTau6" ], "License": "Artistic-2.0", "MD5sum": "a176de6b1b91854d47e783b8249dbf58", "NeedsCompilation": "no", "Title": "Full masked genome sequences for Bos taurus (UCSC version bosTau6)", "Description": "Full genome sequences for Bos taurus (Cow) as provided by UCSC (bosTau6, Nov. 2009) and stored in Biostrings objects. The sequences are the same as in BSgenome.Btaurus.UCSC.bosTau6, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are \"active\" by default.", "biocViews": [ "AnnotationData", "BSgenome", "Bos_taurus", "Genetics" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Bos taurus", "source.ver": "src/contrib/BSgenome.Btaurus.UCSC.bosTau6.masked_1.3.99.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 529 }, "BSgenome.Btaurus.UCSC.bosTau8": { "Package": "BSgenome.Btaurus.UCSC.bosTau8", "Version": "1.4.2", "Depends": [ "BSgenome (>= 1.35.20)" ], "Imports": [ "BSgenome" ], "Suggests": [ "GenomicFeatures" ], "License": "Artistic-2.0", "MD5sum": "61ababa7b2b5360fceeb06f0bf49b208", "NeedsCompilation": "no", "Title": "Full genome sequences for Bos taurus (UCSC version bosTau8)", "Description": "Full genome sequences for Bos taurus (Cow) as provided by UCSC (bosTau8, Jun. 2014) and stored in Biostrings objects.", "biocViews": [ "AnnotationData", "BSgenome", "Bos_taurus", "Genetics" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Bos taurus", "source.ver": "src/contrib/BSgenome.Btaurus.UCSC.bosTau8_1.4.2.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 291 }, "BSgenome.Celegans.UCSC.ce10": { "Package": "BSgenome.Celegans.UCSC.ce10", "Version": "1.4.0", "Depends": [ "BSgenome (>= 1.33.5)" ], "Imports": [ "BSgenome" ], "Suggests": [ "GenomicFeatures" ], "License": "Artistic-2.0", "MD5sum": "98a8ca836d6db23e46674552669d7942", "NeedsCompilation": "no", "Title": "Full genome sequences for Caenorhabditis elegans (UCSC version ce10)", "Description": "Full genome sequences for Caenorhabditis elegans (Worm) as provided by UCSC (ce10, Oct. 2010) and stored in Biostrings objects.", "biocViews": [ "AnnotationData", "BSgenome", "Caenorhabditis_elegans", "Genetics" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Caenorhabditis elegans", "source.ver": "src/contrib/BSgenome.Celegans.UCSC.ce10_1.4.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 171, "suggestsMe": [ "ChIPpeakAnno", "RCAS", "triplex" ] }, "BSgenome.Celegans.UCSC.ce11": { "Package": "BSgenome.Celegans.UCSC.ce11", "Version": "1.4.2", "Depends": [ "BSgenome (>= 1.36.0)" ], "Imports": [ "BSgenome" ], "Suggests": [ "GenomicFeatures" ], "License": "Artistic-2.0", "MD5sum": "b80e24149a0c6ed323d0c9a6d112ef52", "NeedsCompilation": "no", "Title": "Full genome sequences for Caenorhabditis elegans (UCSC version ce11)", "Description": "Full genome sequences for Caenorhabditis elegans (Worm) as provided by UCSC (ce11, Feb. 2013) and stored in Biostrings objects.", "biocViews": [ "AnnotationData", "BSgenome", "Caenorhabditis_elegans", "Genetics" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Caenorhabditis elegans", "source.ver": "src/contrib/BSgenome.Celegans.UCSC.ce11_1.4.2.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 278 }, "BSgenome.Celegans.UCSC.ce2": { "Package": "BSgenome.Celegans.UCSC.ce2", "Version": "1.4.0", "Depends": [ "BSgenome (>= 1.33.5)" ], "Imports": [ "BSgenome" ], "Suggests": [ "GenomicFeatures" ], "License": "Artistic-2.0", "MD5sum": "b2bf7eec2b07685cf9dcdf42840db208", "NeedsCompilation": "no", "Title": "Full genome sequences for Caenorhabditis elegans (UCSC version ce2)", "Description": "Full genome sequences for Caenorhabditis elegans (Worm) as provided by UCSC (ce2, Mar. 2004) and stored in Biostrings objects.", "biocViews": [ "AnnotationData", "BSgenome", "Caenorhabditis_elegans", "Genetics" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Caenorhabditis elegans", "source.ver": "src/contrib/BSgenome.Celegans.UCSC.ce2_1.4.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 51, "suggestsMe": [ "Biostrings", "BSgenome", "GenomeInfoDb", "GenomicFeatures", "IRanges" ], "dependsOnMe": [ "REDseq" ] }, "BSgenome.Celegans.UCSC.ce6": { "Package": "BSgenome.Celegans.UCSC.ce6", "Version": "1.4.0", "Depends": [ "BSgenome (>= 1.33.5)" ], "Imports": [ "BSgenome" ], "Suggests": [ "TxDb.Celegans.UCSC.ce6.ensGene" ], "License": "Artistic-2.0", "MD5sum": "cb86ff861d8f660c2abd8fc1907d84a6", "NeedsCompilation": "no", "Title": "Full genome sequences for Caenorhabditis elegans (UCSC version ce6)", "Description": "Full genome sequences for Caenorhabditis elegans (Worm) as provided by UCSC (ce6, May 2008) and stored in Biostrings objects.", "biocViews": [ "AnnotationData", "BSgenome", "Caenorhabditis_elegans", "Genetics" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Caenorhabditis elegans", "source.ver": "src/contrib/BSgenome.Celegans.UCSC.ce6_1.4.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 246 }, "BSgenome.Cfamiliaris.UCSC.canFam2": { "Package": "BSgenome.Cfamiliaris.UCSC.canFam2", "Version": "1.4.0", "Depends": [ "BSgenome (>= 1.33.5)" ], "Imports": [ "BSgenome" ], "Suggests": [ "GenomicFeatures" ], "License": "Artistic-2.0", "MD5sum": "b98f5289ed5d362cd815db9352598634", "NeedsCompilation": "no", "Title": "Full genome sequences for Canis lupus familiaris (UCSC version canFam2)", "Description": "Full genome sequences for Canis lupus familiaris (Dog) as provided by UCSC (canFam2, May 2005) and stored in Biostrings objects.", "biocViews": [ "AnnotationData", "BSgenome", "Canis_familiaris", "Genetics" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Canis lupus familiaris", "source.ver": "src/contrib/BSgenome.Cfamiliaris.UCSC.canFam2_1.4.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "dependsOnMe": [ "BSgenome.Cfamiliaris.UCSC.canFam2.masked" ], "importsMe": [ "BSgenome.Cfamiliaris.UCSC.canFam2.masked" ], "Rank": 529 }, "BSgenome.Cfamiliaris.UCSC.canFam2.masked": { "Package": "BSgenome.Cfamiliaris.UCSC.canFam2.masked", "Version": "1.3.99", "Depends": [ "BSgenome (>= 1.31.8)", "BSgenome.Cfamiliaris.UCSC.canFam2" ], "Imports": [ "BSgenome", "BSgenome.Cfamiliaris.UCSC.canFam2" ], "License": "Artistic-2.0", "MD5sum": "6f921533bb83f83f43b8d227b00a48cb", "NeedsCompilation": "no", "Title": "Full masked genome sequences for Canis lupus familiaris (UCSC version canFam2)", "Description": "Full genome sequences for Canis lupus familiaris (Dog) as provided by UCSC (canFam2, May 2005) and stored in Biostrings objects. The sequences are the same as in BSgenome.Cfamiliaris.UCSC.canFam2, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are \"active\" by default.", "biocViews": [ "AnnotationData", "BSgenome", "Canis_familiaris", "Genetics" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Canis lupus familiaris", "source.ver": "src/contrib/BSgenome.Cfamiliaris.UCSC.canFam2.masked_1.3.99.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "BSgenome.Cfamiliaris.UCSC.canFam3": { "Package": "BSgenome.Cfamiliaris.UCSC.canFam3", "Version": "1.4.0", "Depends": [ "BSgenome (>= 1.33.5)" ], "Imports": [ "BSgenome" ], "Suggests": [ "GenomicFeatures" ], "License": "Artistic-2.0", "MD5sum": "efcdc531042be86f99a734cd69c0688c", "NeedsCompilation": "no", "Title": "Full genome sequences for Canis lupus familiaris (UCSC version canFam3)", "Description": "Full genome sequences for Canis lupus familiaris (Dog) as provided by UCSC (canFam3, Sep. 2011) and stored in Biostrings objects.", "biocViews": [ "AnnotationData", "BSgenome", "Canis_familiaris", "Genetics" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Canis lupus familiaris", "source.ver": "src/contrib/BSgenome.Cfamiliaris.UCSC.canFam3_1.4.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "dependsOnMe": [ "BSgenome.Cfamiliaris.UCSC.canFam3.masked" ], "importsMe": [ "BSgenome.Cfamiliaris.UCSC.canFam3.masked" ], "Rank": 261 }, "BSgenome.Cfamiliaris.UCSC.canFam3.masked": { "Package": "BSgenome.Cfamiliaris.UCSC.canFam3.masked", "Version": "1.3.99", "Depends": [ "BSgenome (>= 1.31.8)", "BSgenome.Cfamiliaris.UCSC.canFam3" ], "Imports": [ "BSgenome", "BSgenome.Cfamiliaris.UCSC.canFam3" ], "License": "Artistic-2.0", "MD5sum": "8e2246f51fc967dc2ed748cf967a7649", "NeedsCompilation": "no", "Title": "Full masked genome sequences for Canis lupus familiaris (UCSC version canFam3)", "Description": "Full genome sequences for Canis lupus familiaris (Dog) as provided by UCSC (canFam3, Sep. 2011) and stored in Biostrings objects. The sequences are the same as in BSgenome.Cfamiliaris.UCSC.canFam3, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are \"active\" by default.", "biocViews": [ "AnnotationData", "BSgenome", "Canis_familiaris", "Genetics" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Canis lupus familiaris", "source.ver": "src/contrib/BSgenome.Cfamiliaris.UCSC.canFam3.masked_1.3.99.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "BSgenome.Dmelanogaster.UCSC.dm2": { "Package": "BSgenome.Dmelanogaster.UCSC.dm2", "Version": "1.4.0", "Depends": [ "BSgenome (>= 1.33.5)" ], "Imports": [ "BSgenome" ], "Suggests": [ "GenomicFeatures" ], "License": "Artistic-2.0", "MD5sum": "ebc88df5595fc7aad588b8f3f7de4784", "NeedsCompilation": "no", "Title": "Full genome sequences for Drosophila melanogaster (UCSC version dm2)", "Description": "Full genome sequences for Drosophila melanogaster (Fly) as provided by UCSC (dm2, Apr. 2004) and stored in Biostrings objects.", "biocViews": [ "AnnotationData", "BSgenome", "Drosophila_melanogaster", "Genetics" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Drosophila melanogaster", "source.ver": "src/contrib/BSgenome.Dmelanogaster.UCSC.dm2_1.4.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "dependsOnMe": [ "BSgenome.Dmelanogaster.UCSC.dm2.masked" ], "importsMe": [ "BSgenome.Dmelanogaster.UCSC.dm2.masked" ], "Rank": 319 }, "BSgenome.Dmelanogaster.UCSC.dm2.masked": { "Package": "BSgenome.Dmelanogaster.UCSC.dm2.masked", "Version": "1.3.99", "Depends": [ "BSgenome (>= 1.31.8)", "BSgenome.Dmelanogaster.UCSC.dm2" ], "Imports": [ "BSgenome", "BSgenome.Dmelanogaster.UCSC.dm2" ], "License": "Artistic-2.0", "MD5sum": "ae7ca3053e97a0d6bd20bc2b9635ecce", "NeedsCompilation": "no", "Title": "Full masked genome sequences for Drosophila melanogaster (UCSC version dm2)", "Description": "Full genome sequences for Drosophila melanogaster (Fly) as provided by UCSC (dm2, Apr. 2004) and stored in Biostrings objects. The sequences are the same as in BSgenome.Dmelanogaster.UCSC.dm2, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are \"active\" by default.", "biocViews": [ "AnnotationData", "BSgenome", "Drosophila_melanogaster", "Genetics" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Drosophila melanogaster", "source.ver": "src/contrib/BSgenome.Dmelanogaster.UCSC.dm2.masked_1.3.99.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 726 }, "BSgenome.Dmelanogaster.UCSC.dm3": { "Package": "BSgenome.Dmelanogaster.UCSC.dm3", "Version": "1.4.0", "Depends": [ "BSgenome (>= 1.33.5)" ], "Imports": [ "BSgenome" ], "Suggests": [ "TxDb.Dmelanogaster.UCSC.dm3.ensGene" ], "License": "Artistic-2.0", "MD5sum": "b7ceebf7bfee766596f602f9e808d069", "NeedsCompilation": "no", "Title": "Full genome sequences for Drosophila melanogaster (UCSC version dm3)", "Description": "Full genome sequences for Drosophila melanogaster (Fly) as provided by UCSC (dm3, Apr. 2006) and stored in Biostrings objects.", "biocViews": [ "AnnotationData", "BSgenome", "Drosophila_melanogaster", "Genetics" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Drosophila melanogaster", "source.ver": "src/contrib/BSgenome.Dmelanogaster.UCSC.dm3_1.4.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "dependsOnMe": [ "BSgenome.Dmelanogaster.UCSC.dm3.masked" ], "importsMe": [ "BSgenome.Dmelanogaster.UCSC.dm3.masked" ], "Rank": 66, "suggestsMe": [ "Biostrings", "ChIPanalyser", "easyRNASeq", "GenomicAlignments", "GenomicFeatures", "gmapR", "PWMEnrich", "RCAS", "RnaSeqTutorial" ] }, "BSgenome.Dmelanogaster.UCSC.dm3.masked": { "Package": "BSgenome.Dmelanogaster.UCSC.dm3.masked", "Version": "1.3.99", "Depends": [ "BSgenome (>= 1.31.8)", "BSgenome.Dmelanogaster.UCSC.dm3" ], "Imports": [ "BSgenome", "BSgenome.Dmelanogaster.UCSC.dm3" ], "License": "Artistic-2.0", "MD5sum": "592e7ec451d126b2d314ab6c75d86830", "NeedsCompilation": "no", "Title": "Full masked genome sequences for Drosophila melanogaster (UCSC version dm3)", "Description": "Full genome sequences for Drosophila melanogaster (Fly) as provided by UCSC (dm3, Apr. 2006) and stored in Biostrings objects. The sequences are the same as in BSgenome.Dmelanogaster.UCSC.dm3, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are \"active\" by default.", "biocViews": [ "AnnotationData", "BSgenome", "Drosophila_melanogaster", "Genetics" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Drosophila melanogaster", "source.ver": "src/contrib/BSgenome.Dmelanogaster.UCSC.dm3.masked_1.3.99.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 396 }, "BSgenome.Dmelanogaster.UCSC.dm6": { "Package": "BSgenome.Dmelanogaster.UCSC.dm6", "Version": "1.4.1", "Depends": [ "BSgenome (>= 1.35.10)" ], "Imports": [ "BSgenome" ], "Suggests": [ "GenomicFeatures" ], "License": "Artistic-2.0", "MD5sum": "f9d6e406b7893a17c08edd4521c2802f", "NeedsCompilation": "no", "Title": "Full genome sequences for Drosophila melanogaster (UCSC version dm6)", "Description": "Full genome sequences for Drosophila melanogaster (Fly) as provided by UCSC (dm6, Aug. 2014) and stored in Biostrings objects.", "biocViews": [ "AnnotationData", "BSgenome", "Drosophila_melanogaster", "Genetics" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Drosophila melanogaster", "source.ver": "src/contrib/BSgenome.Dmelanogaster.UCSC.dm6_1.4.1.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 169 }, "BSgenome.Drerio.UCSC.danRer10": { "Package": "BSgenome.Drerio.UCSC.danRer10", "Version": "1.4.2", "Depends": [ "BSgenome (>= 1.36.0)" ], "Imports": [ "BSgenome" ], "Suggests": [ "GenomicFeatures" ], "License": "Artistic-2.0", "MD5sum": "b8dbcc8a338a021ed35656b27b3dd4c0", "NeedsCompilation": "no", "Title": "Full genome sequences for Danio rerio (UCSC version danRer10)", "Description": "Full genome sequences for Danio rerio (Zebrafish) as provided by UCSC (danRer10, Sep. 2014) and stored in Biostrings objects.", "biocViews": [ "AnnotationData", "BSgenome", "Danio_rerio", "Genetics" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Danio rerio", "source.ver": "src/contrib/BSgenome.Drerio.UCSC.danRer10_1.4.2.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 195, "suggestsMe": [ "CNEr" ] }, "BSgenome.Drerio.UCSC.danRer5": { "Package": "BSgenome.Drerio.UCSC.danRer5", "Version": "1.4.0", "Depends": [ "BSgenome (>= 1.33.5)" ], "Imports": [ "BSgenome" ], "Suggests": [ "GenomicFeatures" ], "License": "Artistic-2.0", "MD5sum": "b1fee4bcc0d9cebb2bbdec5cb851f00d", "NeedsCompilation": "no", "Title": "Full genome sequences for Danio rerio (UCSC version danRer5)", "Description": "Full genome sequences for Danio rerio (Zebrafish) as provided by UCSC (danRer5, Jul. 2007) and stored in Biostrings objects.", "biocViews": [ "AnnotationData", "BSgenome", "Danio_rerio", "Genetics" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Danio rerio", "source.ver": "src/contrib/BSgenome.Drerio.UCSC.danRer5_1.4.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "dependsOnMe": [ "BSgenome.Drerio.UCSC.danRer5.masked" ], "importsMe": [ "BSgenome.Drerio.UCSC.danRer5.masked" ], "Rank": 458 }, "BSgenome.Drerio.UCSC.danRer5.masked": { "Package": "BSgenome.Drerio.UCSC.danRer5.masked", "Version": "1.3.99", "Depends": [ "BSgenome (>= 1.31.8)", "BSgenome.Drerio.UCSC.danRer5" ], "Imports": [ "BSgenome", "BSgenome.Drerio.UCSC.danRer5" ], "License": "Artistic-2.0", "MD5sum": "8f0623bcbe1743754a56c55599b535f3", "NeedsCompilation": "no", "Title": "Full masked genome sequences for Danio rerio (UCSC version danRer5)", "Description": "Full genome sequences for Danio rerio (Zebrafish) as provided by UCSC (danRer5, Jul. 2007) and stored in Biostrings objects. The sequences are the same as in BSgenome.Drerio.UCSC.danRer5, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are \"active\" by default.", "biocViews": [ "AnnotationData", "BSgenome", "Danio_rerio", "Genetics" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Danio rerio", "source.ver": "src/contrib/BSgenome.Drerio.UCSC.danRer5.masked_1.3.99.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "BSgenome.Drerio.UCSC.danRer6": { "Package": "BSgenome.Drerio.UCSC.danRer6", "Version": "1.4.0", "Depends": [ "BSgenome (>= 1.33.5)" ], "Imports": [ "BSgenome" ], "Suggests": [ "GenomicFeatures" ], "License": "Artistic-2.0", "MD5sum": "537d37d29d97ae0c31d77decc67b25b0", "NeedsCompilation": "no", "Title": "Full genome sequences for Danio rerio (UCSC version danRer6)", "Description": "Full genome sequences for Danio rerio (Zebrafish) as provided by UCSC (danRer6, Dec. 2008) and stored in Biostrings objects.", "biocViews": [ "AnnotationData", "BSgenome", "Danio_rerio", "Genetics" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Danio rerio", "source.ver": "src/contrib/BSgenome.Drerio.UCSC.danRer6_1.4.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "dependsOnMe": [ "BSgenome.Drerio.UCSC.danRer6.masked" ], "importsMe": [ "BSgenome.Drerio.UCSC.danRer6.masked" ], "Rank": 458 }, "BSgenome.Drerio.UCSC.danRer6.masked": { "Package": "BSgenome.Drerio.UCSC.danRer6.masked", "Version": "1.3.99", "Depends": [ "BSgenome (>= 1.31.8)", "BSgenome.Drerio.UCSC.danRer6" ], "Imports": [ "BSgenome", "BSgenome.Drerio.UCSC.danRer6" ], "License": "Artistic-2.0", "MD5sum": "71c9b05c27b8d2e05735e6494a8f17ba", "NeedsCompilation": "no", "Title": "Full masked genome sequences for Danio rerio (UCSC version danRer6)", "Description": "Full genome sequences for Danio rerio (Zebrafish) as provided by UCSC (danRer6, Dec. 2008) and stored in Biostrings objects. The sequences are the same as in BSgenome.Drerio.UCSC.danRer6, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are \"active\" by default.", "biocViews": [ "AnnotationData", "BSgenome", "Danio_rerio", "Genetics" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Danio rerio", "source.ver": "src/contrib/BSgenome.Drerio.UCSC.danRer6.masked_1.3.99.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "BSgenome.Drerio.UCSC.danRer7": { "Package": "BSgenome.Drerio.UCSC.danRer7", "Version": "1.4.0", "Depends": [ "BSgenome (>= 1.33.5)" ], "Imports": [ "BSgenome" ], "Suggests": [ "GenomicFeatures" ], "License": "Artistic-2.0", "MD5sum": "766b407a46f20d69a143eab0809eb10a", "NeedsCompilation": "no", "Title": "Full genome sequences for Danio rerio (UCSC version danRer7)", "Description": "Full genome sequences for Danio rerio (Zebrafish) as provided by UCSC (danRer7, Jul. 2010) and stored in Biostrings objects.", "biocViews": [ "AnnotationData", "BSgenome", "Danio_rerio", "Genetics" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Danio rerio", "source.ver": "src/contrib/BSgenome.Drerio.UCSC.danRer7_1.4.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "dependsOnMe": [ "BSgenome.Drerio.UCSC.danRer7.masked", "cleanUpdTSeq" ], "importsMe": [ "BSgenome.Drerio.UCSC.danRer7.masked" ], "Rank": 100, "suggestsMe": [ "CAGEr", "ChIPpeakAnno", "heatmaps", "motifbreakR", "seqPattern" ] }, "BSgenome.Drerio.UCSC.danRer7.masked": { "Package": "BSgenome.Drerio.UCSC.danRer7.masked", "Version": "1.3.99", "Depends": [ "BSgenome (>= 1.31.8)", "BSgenome.Drerio.UCSC.danRer7" ], "Imports": [ "BSgenome", "BSgenome.Drerio.UCSC.danRer7" ], "License": "Artistic-2.0", "MD5sum": "5d68af24477d006ed22e7342ff97ac16", "NeedsCompilation": "no", "Title": "Full masked genome sequences for Danio rerio (UCSC version danRer7)", "Description": "Full genome sequences for Danio rerio (Zebrafish) as provided by UCSC (danRer7, Jul. 2010) and stored in Biostrings objects. The sequences are the same as in BSgenome.Drerio.UCSC.danRer7, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are \"active\" by default.", "biocViews": [ "AnnotationData", "BSgenome", "Danio_rerio", "Genetics" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Danio rerio", "source.ver": "src/contrib/BSgenome.Drerio.UCSC.danRer7.masked_1.3.99.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 529 }, "BSgenome.Ecoli.NCBI.20080805": { "Package": "BSgenome.Ecoli.NCBI.20080805", "Version": "1.3.1000", "Depends": [ "BSgenome (>= 1.33.5)" ], "Imports": [ "BSgenome" ], "License": "Artistic-2.0", "MD5sum": "c653e9cbee3faeb6fd5759b7575f234d", "NeedsCompilation": "no", "Title": "Escherichia coli full genomes", "Description": "Escherichia coli full genomes for several strains as provided by NCBI on 2008/08/05 and stored in Biostrings objects.", "biocViews": [ "AnnotationData", "BSgenome", "Escherichia_coli", "Genetics" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Escherichia coli", "source.ver": "src/contrib/BSgenome.Ecoli.NCBI.20080805_1.3.1000.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 72, "suggestsMe": [ "ChIPpeakAnno", "diffHic", "ramwas" ], "importsMe": [ "Basic4Cseq" ] }, "BSgenome.Gaculeatus.UCSC.gasAcu1": { "Package": "BSgenome.Gaculeatus.UCSC.gasAcu1", "Version": "1.4.0", "Depends": [ "BSgenome (>= 1.33.5)" ], "Imports": [ "BSgenome" ], "Suggests": [ "GenomicFeatures" ], "License": "Artistic-2.0", "MD5sum": "412aa0570d9c556861b7bb9a5bbc2007", "NeedsCompilation": "no", "Title": "Full genome sequences for Gasterosteus aculeatus (UCSC version gasAcu1)", "Description": "Full genome sequences for Gasterosteus aculeatus (Stickleback) as provided by UCSC (gasAcu1, Feb. 2006) and stored in Biostrings objects.", "biocViews": [ "AnnotationData", "BSgenome", "Gasterosteus_aculeatus", "Genetics" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Gasterosteus aculeatus", "source.ver": "src/contrib/BSgenome.Gaculeatus.UCSC.gasAcu1_1.4.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "dependsOnMe": [ "BSgenome.Gaculeatus.UCSC.gasAcu1.masked" ], "importsMe": [ "BSgenome.Gaculeatus.UCSC.gasAcu1.masked" ], "Rank": 458 }, "BSgenome.Gaculeatus.UCSC.gasAcu1.masked": { "Package": "BSgenome.Gaculeatus.UCSC.gasAcu1.masked", "Version": "1.3.99", "Depends": [ "BSgenome (>= 1.31.8)", "BSgenome.Gaculeatus.UCSC.gasAcu1" ], "Imports": [ "BSgenome", "BSgenome.Gaculeatus.UCSC.gasAcu1" ], "License": "Artistic-2.0", "MD5sum": "9d9b9e70f4f4624ee4a2b09a59d44510", "NeedsCompilation": "no", "Title": "Full masked genome sequences for Gasterosteus aculeatus (UCSC version gasAcu1)", "Description": "Full genome sequences for Gasterosteus aculeatus (Stickleback) as provided by UCSC (gasAcu1, Feb. 2006) and stored in Biostrings objects. The sequences are the same as in BSgenome.Gaculeatus.UCSC.gasAcu1, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are \"active\" by default.", "biocViews": [ "AnnotationData", "BSgenome", "Gasterosteus_aculeatus", "Genetics" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Gasterosteus aculeatus", "source.ver": "src/contrib/BSgenome.Gaculeatus.UCSC.gasAcu1.masked_1.3.99.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 726 }, "BSgenome.Ggallus.UCSC.galGal3": { "Package": "BSgenome.Ggallus.UCSC.galGal3", "Version": "1.4.0", "Depends": [ "BSgenome (>= 1.33.5)" ], "Imports": [ "BSgenome" ], "Suggests": [ "GenomicFeatures" ], "License": "Artistic-2.0", "MD5sum": "a463e5ccfc8c6d2c62a6ade0da65dbc4", "NeedsCompilation": "no", "Title": "Full genome sequences for Gallus gallus (UCSC version galGal3)", "Description": "Full genome sequences for Gallus gallus (Chicken) as provided by UCSC (galGal3, May 2006) and stored in Biostrings objects.", "biocViews": [ "AnnotationData", "BSgenome", "Gallus_gallus", "Genetics" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Gallus gallus", "source.ver": "src/contrib/BSgenome.Ggallus.UCSC.galGal3_1.4.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "dependsOnMe": [ "BSgenome.Ggallus.UCSC.galGal3.masked" ], "importsMe": [ "BSgenome.Ggallus.UCSC.galGal3.masked" ], "Rank": 261, "suggestsMe": [ "CNEr" ] }, "BSgenome.Ggallus.UCSC.galGal3.masked": { "Package": "BSgenome.Ggallus.UCSC.galGal3.masked", "Version": "1.3.99", "Depends": [ "BSgenome (>= 1.31.8)", "BSgenome.Ggallus.UCSC.galGal3" ], "Imports": [ "BSgenome", "BSgenome.Ggallus.UCSC.galGal3" ], "License": "Artistic-2.0", "MD5sum": "b3224e3a2b15de379c068e61cedfefa6", "NeedsCompilation": "no", "Title": "Full masked genome sequences for Gallus gallus (UCSC version galGal3)", "Description": "Full genome sequences for Gallus gallus (Chicken) as provided by UCSC (galGal3, May 2006) and stored in Biostrings objects. The sequences are the same as in BSgenome.Ggallus.UCSC.galGal3, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are \"active\" by default.", "biocViews": [ "AnnotationData", "BSgenome", "Gallus_gallus", "Genetics" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Gallus gallus", "source.ver": "src/contrib/BSgenome.Ggallus.UCSC.galGal3.masked_1.3.99.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "BSgenome.Ggallus.UCSC.galGal4": { "Package": "BSgenome.Ggallus.UCSC.galGal4", "Version": "1.4.0", "Depends": [ "BSgenome (>= 1.33.5)" ], "Imports": [ "BSgenome" ], "Suggests": [ "GenomicFeatures" ], "License": "Artistic-2.0", "MD5sum": "c2cb4bfc39db93c060e78d8d12542c11", "NeedsCompilation": "no", "Title": "Full genome sequences for Gallus gallus (UCSC version galGal4)", "Description": "Full genome sequences for Gallus gallus (Chicken) as provided by UCSC (galGal4, Nov. 2011) and stored in Biostrings objects.", "biocViews": [ "AnnotationData", "BSgenome", "Gallus_gallus", "Genetics" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Gallus gallus", "source.ver": "src/contrib/BSgenome.Ggallus.UCSC.galGal4_1.4.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "dependsOnMe": [ "BSgenome.Ggallus.UCSC.galGal4.masked" ], "importsMe": [ "BSgenome.Ggallus.UCSC.galGal4.masked" ], "Rank": 319 }, "BSgenome.Ggallus.UCSC.galGal4.masked": { "Package": "BSgenome.Ggallus.UCSC.galGal4.masked", "Version": "1.3.99", "Depends": [ "BSgenome (>= 1.31.8)", "BSgenome.Ggallus.UCSC.galGal4" ], "Imports": [ "BSgenome", "BSgenome.Ggallus.UCSC.galGal4" ], "License": "Artistic-2.0", "MD5sum": "0166121ebd8d0b6a4d24d67e175cfe81", "NeedsCompilation": "no", "Title": "Full masked genome sequences for Gallus gallus (UCSC version galGal4)", "Description": "Full genome sequences for Gallus gallus (Chicken) as provided by UCSC (galGal4, Nov. 2011) and stored in Biostrings objects. The sequences are the same as in BSgenome.Ggallus.UCSC.galGal4, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are \"active\" by default.", "biocViews": [ "AnnotationData", "BSgenome", "Gallus_gallus", "Genetics" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Gallus gallus", "source.ver": "src/contrib/BSgenome.Ggallus.UCSC.galGal4.masked_1.3.99.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "BSgenome.Ggallus.UCSC.galGal5": { "Package": "BSgenome.Ggallus.UCSC.galGal5", "Version": "1.4.2", "Depends": [ "BSgenome (>= 1.40.0)" ], "Imports": [ "BSgenome" ], "License": "Artistic-2.0", "MD5sum": "93b42354404edd848b21ea6781ca135c", "NeedsCompilation": "no", "Title": "Full genome sequences for Gallus gallus (UCSC version galGal5)", "Description": "Full genome sequences for Gallus gallus (Chicken) as provided by UCSC (galGal5, Dec. 2015) and stored in Biostrings objects.", "biocViews": [ "AnnotationData", "BSgenome", "Gallus_gallus", "Genetics" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Gallus gallus", "source.ver": "src/contrib/BSgenome.Ggallus.UCSC.galGal5_1.4.2.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 396 }, "BSgenome.Hsapiens.1000genomes.hs37d5": { "Package": "BSgenome.Hsapiens.1000genomes.hs37d5", "Version": "0.99.1", "Depends": [ "BSgenome (>= 1.34.0)" ], "License": "Artistic-2.0", "MD5sum": "164e1692d38fefa499c2c8ac5fc22793", "NeedsCompilation": "no", "Title": "1000genomes Reference Genome Sequence (hs37d5)", "Description": "1000genomes Phase2 Reference Genome Sequence (hs37d5), based on NCBI GRCh37.", "biocViews": [ "AnnotationData", "BSgenome", "Genetics", "Homo_sapiens" ], "Author": "Julian Gehring", "Maintainer": "Julian Gehring ", "organism": "Homo sapiens", "source.ver": "src/contrib/BSgenome.Hsapiens.1000genomes.hs37d5_0.99.1.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 85, "suggestsMe": [ "MutationalPatterns", "SomaticSignatures", "VariantFiltering" ], "importsMe": [ "SparseSignatures" ] }, "BSgenome.Hsapiens.NCBI.GRCh38": { "Package": "BSgenome.Hsapiens.NCBI.GRCh38", "Version": "1.3.1000", "Depends": [ "BSgenome (>= 1.33.5)" ], "Imports": [ "BSgenome" ], "License": "Artistic-2.0", "MD5sum": "733d324b34d34d7da8c4bf38459f4fae", "NeedsCompilation": "no", "Title": "Full genome sequences for Homo sapiens (GRCh38)", "Description": "Full genome sequences for Homo sapiens (Human) as provided by NCBI (GRCh38, 2013-12-17) and stored in Biostrings objects.", "biocViews": [ "AnnotationData", "BSgenome", "Genetics", "Homo_sapiens" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Homo sapiens", "source.ver": "src/contrib/BSgenome.Hsapiens.NCBI.GRCh38_1.3.1000.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "suggestsMe": [ "alpine", "ensembldb", "GenomeInfoDb", "h5vc", "Pbase", "scmeth", "SNPlocs.Hsapiens.dbSNP141.GRCh38", "XtraSNPlocs.Hsapiens.dbSNP141.GRCh38" ], "Rank": 65 }, "BSgenome.Hsapiens.UCSC.hg17": { "Package": "BSgenome.Hsapiens.UCSC.hg17", "Version": "1.3.1000", "Depends": [ "BSgenome (>= 1.33.5)" ], "Imports": [ "BSgenome" ], "Suggests": [ "GenomicFeatures" ], "License": "Artistic-2.0", "MD5sum": "cbea3029c3d3125a88e6c061c3d3abde", "NeedsCompilation": "no", "Title": "Full genome sequences for Homo sapiens (UCSC version hg17)", "Description": "Full genome sequences for Homo sapiens (Human) as provided by UCSC (hg17, May 2004) and stored in Biostrings objects.", "biocViews": [ "AnnotationData", "BSgenome", "Genetics", "Homo_sapiens" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Homo sapiens", "source.ver": "src/contrib/BSgenome.Hsapiens.UCSC.hg17_1.3.1000.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "dependsOnMe": [ "BSgenome.Hsapiens.UCSC.hg17.masked" ], "importsMe": [ "BSgenome.Hsapiens.UCSC.hg17.masked" ], "Rank": 458 }, "BSgenome.Hsapiens.UCSC.hg17.masked": { "Package": "BSgenome.Hsapiens.UCSC.hg17.masked", "Version": "1.3.99", "Depends": [ "BSgenome (>= 1.31.8)", "BSgenome.Hsapiens.UCSC.hg17" ], "Imports": [ "BSgenome", "BSgenome.Hsapiens.UCSC.hg17" ], "License": "Artistic-2.0", "MD5sum": "ff6ee5196f234c5a2a3bcdd052c3c08e", "NeedsCompilation": "no", "Title": "Full masked genome sequences for Homo sapiens (UCSC version hg17)", "Description": "Full genome sequences for Homo sapiens (Human) as provided by UCSC (hg17, May 2004) and stored in Biostrings objects. The sequences are the same as in BSgenome.Hsapiens.UCSC.hg17, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are \"active\" by default.", "biocViews": [ "AnnotationData", "BSgenome", "Genetics", "Homo_sapiens" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Homo sapiens", "source.ver": "src/contrib/BSgenome.Hsapiens.UCSC.hg17.masked_1.3.99.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 591 }, "BSgenome.Hsapiens.UCSC.hg18": { "Package": "BSgenome.Hsapiens.UCSC.hg18", "Version": "1.3.1000", "Depends": [ "BSgenome (>= 1.33.5)" ], "Imports": [ "BSgenome" ], "Suggests": [ "TxDb.Hsapiens.UCSC.hg18.knownGene" ], "License": "Artistic-2.0", "MD5sum": "51bb2e1ed4009860bb21aaac32fffd9c", "NeedsCompilation": "no", "Title": "Full genome sequences for Homo sapiens (UCSC version hg18)", "Description": "Full genome sequences for Homo sapiens (Human) as provided by UCSC (hg18, Mar. 2006) and stored in Biostrings objects.", "biocViews": [ "AnnotationData", "BSgenome", "Genetics", "Homo_sapiens" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Homo sapiens", "source.ver": "src/contrib/BSgenome.Hsapiens.UCSC.hg18_1.3.1000.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "dependsOnMe": [ "BSgenome.Hsapiens.UCSC.hg18.masked" ], "importsMe": [ "BSgenome.Hsapiens.UCSC.hg18.masked", "VanillaICE" ], "Rank": 62, "suggestsMe": [ "ArrayTV", "Biostrings", "charm", "ListerEtAlBSseq", "MEDME", "methylPipe", "MethylSeekR", "MinimumDistance", "oligo", "Repitools" ] }, "BSgenome.Hsapiens.UCSC.hg18.masked": { "Package": "BSgenome.Hsapiens.UCSC.hg18.masked", "Version": "1.3.99", "Depends": [ "BSgenome (>= 1.31.8)", "BSgenome.Hsapiens.UCSC.hg18" ], "Imports": [ "BSgenome", "BSgenome.Hsapiens.UCSC.hg18" ], "License": "Artistic-2.0", "MD5sum": "e6a31e3cba34ce5e0eb6f76d2c19870c", "NeedsCompilation": "no", "Title": "Full masked genome sequences for Homo sapiens (UCSC version hg18)", "Description": "Full genome sequences for Homo sapiens (Human) as provided by UCSC (hg18, Mar. 2006) and stored in Biostrings objects. The sequences are the same as in BSgenome.Hsapiens.UCSC.hg18, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are \"active\" by default.", "biocViews": [ "AnnotationData", "BSgenome", "Genetics", "Homo_sapiens" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Homo sapiens", "source.ver": "src/contrib/BSgenome.Hsapiens.UCSC.hg18.masked_1.3.99.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 225, "suggestsMe": [ "r3Cseq" ] }, "BSgenome.Hsapiens.UCSC.hg19": { "Package": "BSgenome.Hsapiens.UCSC.hg19", "Version": "1.4.0", "Depends": [ "BSgenome (>= 1.33.5)" ], "Imports": [ "BSgenome" ], "Suggests": [ "TxDb.Hsapiens.UCSC.hg19.knownGene" ], "License": "Artistic-2.0", "MD5sum": "672a988b28d8602afb2bd5595db7303b", "NeedsCompilation": "no", "Title": "Full genome sequences for Homo sapiens (UCSC version hg19)", "Description": "Full genome sequences for Homo sapiens (Human) as provided by UCSC (hg19, Feb. 2009) and stored in Biostrings objects.", "biocViews": [ "AnnotationData", "BSgenome", "Genetics", "Homo_sapiens" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Homo sapiens", "source.ver": "src/contrib/BSgenome.Hsapiens.UCSC.hg19_1.4.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "dependsOnMe": [ "annotation", "BSgenome.Hsapiens.UCSC.hg19.masked", "chimera", "CODEX", "motifRG", "sequencing", "traseR", "variants" ], "importsMe": [ "BSgenome.Hsapiens.UCSC.hg19.masked", "ChIPComp", "MADSEQ", "RareVariantVis", "RCAS", "REMP", "TCGAWorkflow", "trena" ], "suggestsMe": [ "AneuFinder", "ArrayTV", "ATACseqQC", "BadRegionFinder", "Basic4Cseq", "BBCAnalyzer", "biovizBase", "ChIPpeakAnno", "chromVAR", "CNEr", "CRISPRseek", "customProDB", "DNAshapeR", "esATAC", "FDb.FANTOM4.promoters.hg19", "FDb.UCSC.snp135common.hg19", "FDb.UCSC.snp137common.hg19", "gcapc", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "GenomicScores", "GenVisR", "ggbio", "gmapR", "GoogleGenomics", "GUIDEseq", "Gviz", "h5vc", "InPAS", "IntEREst", "IsoformSwitchAnalyzeR", "karyoploteR", "MEDIPS", "MinimumDistance", "MiRaGE", "motifbreakR", "motifmatchr", "MutationalPatterns", "ORFik", "OrganismDbi", "PGA", "plyranges", "qsea", "R453Plus1Toolbox", "Rariant", "rGADEM", "RiboProfiling", "Rsamtools", "RSVSim", "rtracklayer", "SGSeq", "signeR", "SNPlocs.Hsapiens.dbSNP.20101109", "SNPlocs.Hsapiens.dbSNP.20120608", "SNPlocs.Hsapiens.dbSNP142.GRCh37", "SNPlocs.Hsapiens.dbSNP144.GRCh37", "spliceR", "VariantAnnotation", "wavClusteR", "XtraSNPlocs.Hsapiens.dbSNP144.GRCh37", "YAPSA" ], "Rank": 7 }, "BSgenome.Hsapiens.UCSC.hg19.masked": { "Package": "BSgenome.Hsapiens.UCSC.hg19.masked", "Version": "1.3.99", "Depends": [ "BSgenome (>= 1.31.8)", "BSgenome.Hsapiens.UCSC.hg19" ], "Imports": [ "BSgenome", "BSgenome.Hsapiens.UCSC.hg19" ], "License": "Artistic-2.0", "MD5sum": "8abeb2afb811e1a38cf822d1bc0cb50a", "NeedsCompilation": "no", "Title": "Full masked genome sequences for Homo sapiens (UCSC version hg19)", "Description": "Full genome sequences for Homo sapiens (Human) as provided by UCSC (hg19, Feb. 2009) and stored in Biostrings objects. The sequences are the same as in BSgenome.Hsapiens.UCSC.hg19, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are \"active\" by default.", "biocViews": [ "AnnotationData", "BSgenome", "Genetics", "Homo_sapiens" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Homo sapiens", "source.ver": "src/contrib/BSgenome.Hsapiens.UCSC.hg19.masked_1.3.99.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "suggestsMe": [ "r3Cseq", "regioneR", "RSVSim", "SNPlocs.Hsapiens.dbSNP142.GRCh37" ], "Rank": 107 }, "BSgenome.Hsapiens.UCSC.hg38": { "Package": "BSgenome.Hsapiens.UCSC.hg38", "Version": "1.4.1", "Depends": [ "BSgenome (>= 1.35.16)" ], "Imports": [ "BSgenome" ], "Suggests": [ "TxDb.Hsapiens.UCSC.hg38.knownGene" ], "License": "Artistic-2.0", "MD5sum": "1b95bfdc9763351b04611666cd624b30", "NeedsCompilation": "no", "Title": "Full genome sequences for Homo sapiens (UCSC version hg38)", "Description": "Full genome sequences for Homo sapiens (Human) as provided by UCSC (hg38, Dec. 2013) and stored in Biostrings objects.", "biocViews": [ "AnnotationData", "BSgenome", "Genetics", "Homo_sapiens" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Homo sapiens", "source.ver": "src/contrib/BSgenome.Hsapiens.UCSC.hg38_1.4.1.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "dependsOnMe": [ "BSgenome.Hsapiens.UCSC.hg38.masked" ], "importsMe": [ "branchpointer", "BSgenome.Hsapiens.UCSC.hg38.masked", "trena" ], "suggestsMe": [ "BSgenome", "CNEr", "GenVisR", "pqsfinder", "RCAS", "SNPlocs.Hsapiens.dbSNP144.GRCh38", "SNPlocs.Hsapiens.dbSNP149.GRCh38", "SNPlocs.Hsapiens.dbSNP150.GRCh38", "SNPlocs.Hsapiens.dbSNP151.GRCh38", "XtraSNPlocs.Hsapiens.dbSNP144.GRCh38" ], "Rank": 27 }, "BSgenome.Hsapiens.UCSC.hg38.masked": { "Package": "BSgenome.Hsapiens.UCSC.hg38.masked", "Version": "1.3.99", "Depends": [ "BSgenome (>= 1.35.17)", "BSgenome.Hsapiens.UCSC.hg38" ], "Imports": [ "BSgenome", "BSgenome.Hsapiens.UCSC.hg38" ], "License": "Artistic-2.0", "MD5sum": "50c9fc14be05113dc56651ea7a49beb1", "NeedsCompilation": "no", "Title": "Full masked genome sequences for Homo sapiens (UCSC version hg38)", "Description": "Full genome sequences for Homo sapiens (Human) as provided by UCSC (hg38, Dec. 2013) and stored in Biostrings objects. The sequences are the same as in BSgenome.Hsapiens.UCSC.hg38, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are \"active\" by default.", "biocViews": [ "AnnotationData", "BSgenome", "Genetics", "Homo_sapiens" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Homo sapiens", "source.ver": "src/contrib/BSgenome.Hsapiens.UCSC.hg38.masked_1.3.99.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 148, "suggestsMe": [ "BSgenome", "podkat" ] }, "BSgenome.Mfascicularis.NCBI.5.0": { "Package": "BSgenome.Mfascicularis.NCBI.5.0", "Version": "1.4.2", "Depends": [ "BSgenome (>= 1.36.0)" ], "Imports": [ "BSgenome" ], "License": "Artistic-2.0", "MD5sum": "dba6ade39dc6b4f6d06f488141b5550b", "NeedsCompilation": "no", "Title": "Full genome sequences for Macaca fascicularis (Macaca_fascicularis_5.0)", "Description": "Full genome sequences for Macaca fascicularis (long-tailed macaque) as provided by NCBI (Macaca_fascicularis_5.0, 2013-06-12) and stored in Biostrings objects.", "biocViews": [ "AnnotationData", "BSgenome", "Genetics", "Macaca_fascicularis" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Macaca fascicularis", "source.ver": "src/contrib/BSgenome.Mfascicularis.NCBI.5.0_1.4.2.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 396 }, "BSgenome.Mfuro.UCSC.musFur1": { "Package": "BSgenome.Mfuro.UCSC.musFur1", "Version": "1.4.1", "Depends": [ "BSgenome (>= 1.33.8)" ], "Imports": [ "BSgenome" ], "License": "Artistic-2.0", "MD5sum": "c33e71746ce551bcbcd22be1979aee63", "NeedsCompilation": "no", "Title": "Full genome sequences for Mustela putorius furo (UCSC version musFur1)", "Description": "Full genome sequences for Mustela putorius furo (Ferret) as provided by UCSC (musFur1, Apr. 2011) and stored in Biostrings objects.", "biocViews": [ "AnnotationData", "BSgenome", "Genetics", "Mustela_furo" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Mustela putorius furo", "source.ver": "src/contrib/BSgenome.Mfuro.UCSC.musFur1_1.4.1.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 591 }, "BSgenome.Mmulatta.UCSC.rheMac2": { "Package": "BSgenome.Mmulatta.UCSC.rheMac2", "Version": "1.4.0", "Depends": [ "BSgenome (>= 1.33.5)" ], "Imports": [ "BSgenome" ], "Suggests": [ "GenomicFeatures" ], "License": "Artistic-2.0", "MD5sum": "90c43e127e76dfd7cea90de9e1af9a50", "NeedsCompilation": "no", "Title": "Full genome sequences for Macaca mulatta (UCSC version rheMac2)", "Description": "Full genome sequences for Macaca mulatta (Rhesus) as provided by UCSC (rheMac2, Jan. 2006) and stored in Biostrings objects.", "biocViews": [ "AnnotationData", "BSgenome", "Genetics", "Macaca_mulatta" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Macaca mulatta", "source.ver": "src/contrib/BSgenome.Mmulatta.UCSC.rheMac2_1.4.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "dependsOnMe": [ "BSgenome.Mmulatta.UCSC.rheMac2.masked" ], "importsMe": [ "BSgenome.Mmulatta.UCSC.rheMac2.masked" ], "Rank": 591 }, "BSgenome.Mmulatta.UCSC.rheMac2.masked": { "Package": "BSgenome.Mmulatta.UCSC.rheMac2.masked", "Version": "1.3.99", "Depends": [ "BSgenome (>= 1.31.8)", "BSgenome.Mmulatta.UCSC.rheMac2" ], "Imports": [ "BSgenome", "BSgenome.Mmulatta.UCSC.rheMac2" ], "License": "Artistic-2.0", "MD5sum": "7602d86b68df7e4c8d336fede4090a62", "NeedsCompilation": "no", "Title": "Full masked genome sequences for Macaca mulatta (UCSC version rheMac2)", "Description": "Full genome sequences for Macaca mulatta (Rhesus) as provided by UCSC (rheMac2, Jan. 2006) and stored in Biostrings objects. The sequences are the same as in BSgenome.Mmulatta.UCSC.rheMac2, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are \"active\" by default. NOTE: In most assemblies available at UCSC, Tandem Repeats Finder repeats were filtered to retain only the repeats with period <= 12. However, the filtering was omitted for this assembly, so the TRF masks contain all Tandem Repeats Finder results.", "biocViews": [ "AnnotationData", "BSgenome", "Genetics", "Macaca_mulatta" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Macaca mulatta", "source.ver": "src/contrib/BSgenome.Mmulatta.UCSC.rheMac2.masked_1.3.99.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "BSgenome.Mmulatta.UCSC.rheMac3": { "Package": "BSgenome.Mmulatta.UCSC.rheMac3", "Version": "1.4.0", "Depends": [ "BSgenome (>= 1.33.5)" ], "Imports": [ "BSgenome" ], "Suggests": [ "GenomicFeatures" ], "License": "Artistic-2.0", "MD5sum": "dfa1ecb9d0bb7a5d9fa628092fb1c354", "NeedsCompilation": "no", "Title": "Full genome sequences for Macaca mulatta (UCSC version rheMac3)", "Description": "Full genome sequences for Macaca mulatta (Rhesus) as provided by UCSC (rheMac3, Oct. 2010) and stored in Biostrings objects.", "biocViews": [ "AnnotationData", "BSgenome", "Genetics", "Macaca_mulatta" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Macaca mulatta", "source.ver": "src/contrib/BSgenome.Mmulatta.UCSC.rheMac3_1.4.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "dependsOnMe": [ "BSgenome.Mmulatta.UCSC.rheMac3.masked" ], "importsMe": [ "BSgenome.Mmulatta.UCSC.rheMac3.masked" ], "Rank": 644 }, "BSgenome.Mmulatta.UCSC.rheMac3.masked": { "Package": "BSgenome.Mmulatta.UCSC.rheMac3.masked", "Version": "1.3.99", "Depends": [ "BSgenome (>= 1.31.8)", "BSgenome.Mmulatta.UCSC.rheMac3" ], "Imports": [ "BSgenome", "BSgenome.Mmulatta.UCSC.rheMac3" ], "License": "Artistic-2.0", "MD5sum": "94f8714865655d3144e14f6fc5c24e76", "NeedsCompilation": "no", "Title": "Full masked genome sequences for Macaca mulatta (UCSC version rheMac3)", "Description": "Full genome sequences for Macaca mulatta (Rhesus) as provided by UCSC (rheMac3, Oct. 2010) and stored in Biostrings objects. The sequences are the same as in BSgenome.Mmulatta.UCSC.rheMac3, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are \"active\" by default.", "biocViews": [ "AnnotationData", "BSgenome", "Genetics", "Macaca_mulatta" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Macaca mulatta", "source.ver": "src/contrib/BSgenome.Mmulatta.UCSC.rheMac3.masked_1.3.99.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 591 }, "BSgenome.Mmulatta.UCSC.rheMac8": { "Package": "BSgenome.Mmulatta.UCSC.rheMac8", "Version": "1.4.2", "Depends": [ "BSgenome (>= 1.40.1)" ], "Imports": [ "BSgenome" ], "License": "Artistic-2.0", "MD5sum": "e9ad1f70f652c62554e2c5af7638c015", "NeedsCompilation": "no", "Title": "Full genome sequences for Macaca mulatta (UCSC version rheMac8)", "Description": "Full genome sequences for Macaca mulatta (Rhesus) as provided by UCSC (rheMac8, Nov. 2015) and stored in Biostrings objects.", "biocViews": [ "AnnotationData", "BSgenome", "Genetics", "Macaca_mulatta" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Macaca mulatta", "source.ver": "src/contrib/BSgenome.Mmulatta.UCSC.rheMac8_1.4.2.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 591 }, "BSgenome.Mmusculus.UCSC.mm10": { "Package": "BSgenome.Mmusculus.UCSC.mm10", "Version": "1.4.0", "Depends": [ "BSgenome (>= 1.33.5)" ], "Imports": [ "BSgenome" ], "Suggests": [ "TxDb.Mmusculus.UCSC.mm10.knownGene" ], "License": "Artistic-2.0", "MD5sum": "929f8bd0ea9ad416ecc0c2c002500414", "NeedsCompilation": "no", "Title": "Full genome sequences for Mus musculus (UCSC version mm10)", "Description": "Full genome sequences for Mus musculus (Mouse) as provided by UCSC (mm10, Dec. 2011) and stored in Biostrings objects.", "biocViews": [ "AnnotationData", "BSgenome", "Genetics", "Mus_musculus" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Mus musculus", "source.ver": "src/contrib/BSgenome.Mmusculus.UCSC.mm10_1.4.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "dependsOnMe": [ "BSgenome.Mmusculus.UCSC.mm10.masked", "DOQTL" ], "importsMe": [ "BSgenome.Mmusculus.UCSC.mm10.masked", "GeneStructureTools", "trena" ], "Rank": 26, "suggestsMe": [ "AneuFinder", "BSgenome", "gcapc", "GenomicRanges", "InPAS", "MiRaGE", "NADfinder", "RCAS", "scmeth" ] }, "BSgenome.Mmusculus.UCSC.mm10.masked": { "Package": "BSgenome.Mmusculus.UCSC.mm10.masked", "Version": "1.3.99", "Depends": [ "BSgenome (>= 1.31.8)", "BSgenome.Mmusculus.UCSC.mm10" ], "Imports": [ "BSgenome", "BSgenome.Mmusculus.UCSC.mm10" ], "License": "Artistic-2.0", "MD5sum": "c6a5365fa1a0d2a5ecb63752960eb3d7", "NeedsCompilation": "no", "Title": "Full masked genome sequences for Mus musculus (UCSC version mm10)", "Description": "Full genome sequences for Mus musculus (Mouse) as provided by UCSC (mm10, Dec. 2011) and stored in Biostrings objects. The sequences are the same as in BSgenome.Mmusculus.UCSC.mm10, except that each of them has the 2 following masks on top: (1) the mask of assembly gaps (AGAPS mask), and (2) the mask of intra-contig ambiguities (AMB mask).", "biocViews": [ "AnnotationData", "BSgenome", "Genetics", "Mus_musculus" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Mus musculus", "source.ver": "src/contrib/BSgenome.Mmusculus.UCSC.mm10.masked_1.3.99.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 211, "suggestsMe": [ "podkat", "r3Cseq" ] }, "BSgenome.Mmusculus.UCSC.mm8": { "Package": "BSgenome.Mmusculus.UCSC.mm8", "Version": "1.4.0", "Depends": [ "BSgenome (>= 1.33.5)" ], "Imports": [ "BSgenome" ], "Suggests": [ "GenomicFeatures" ], "License": "Artistic-2.0", "MD5sum": "f6aa91cdce2607f30a34f6dd0d678aff", "NeedsCompilation": "no", "Title": "Full genome sequences for Mus musculus (UCSC version mm8)", "Description": "Full genome sequences for Mus musculus (Mouse) as provided by UCSC (mm8, Feb. 2006) and stored in Biostrings objects.", "biocViews": [ "AnnotationData", "BSgenome", "Genetics", "Mus_musculus" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Mus musculus", "source.ver": "src/contrib/BSgenome.Mmusculus.UCSC.mm8_1.4.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "dependsOnMe": [ "BSgenome.Mmusculus.UCSC.mm8.masked" ], "importsMe": [ "BSgenome.Mmusculus.UCSC.mm8.masked" ], "Rank": 278 }, "BSgenome.Mmusculus.UCSC.mm8.masked": { "Package": "BSgenome.Mmusculus.UCSC.mm8.masked", "Version": "1.3.99", "Depends": [ "BSgenome (>= 1.31.8)", "BSgenome.Mmusculus.UCSC.mm8" ], "Imports": [ "BSgenome", "BSgenome.Mmusculus.UCSC.mm8" ], "License": "Artistic-2.0", "MD5sum": "5809f925e0fe7c4b73b78a90c9a36fdd", "NeedsCompilation": "no", "Title": "Full masked genome sequences for Mus musculus (UCSC version mm8)", "Description": "Full genome sequences for Mus musculus (Mouse) as provided by UCSC (mm8, Feb. 2006) and stored in Biostrings objects. The sequences are the same as in BSgenome.Mmusculus.UCSC.mm8, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are \"active\" by default.", "biocViews": [ "AnnotationData", "BSgenome", "Genetics", "Mus_musculus" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Mus musculus", "source.ver": "src/contrib/BSgenome.Mmusculus.UCSC.mm8.masked_1.3.99.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 359, "suggestsMe": [ "rTRM" ] }, "BSgenome.Mmusculus.UCSC.mm9": { "Package": "BSgenome.Mmusculus.UCSC.mm9", "Version": "1.4.0", "Depends": [ "BSgenome (>= 1.33.5)" ], "Imports": [ "BSgenome" ], "Suggests": [ "TxDb.Mmusculus.UCSC.mm9.knownGene" ], "License": "Artistic-2.0", "MD5sum": "5a30ba2b4481a17e8e6979eb69eabf78", "NeedsCompilation": "no", "Title": "Full genome sequences for Mus musculus (UCSC version mm9)", "Description": "Full genome sequences for Mus musculus (Mouse) as provided by UCSC (mm9, Jul. 2007) and stored in Biostrings objects.", "biocViews": [ "AnnotationData", "BSgenome", "Genetics", "Mus_musculus" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Mus musculus", "source.ver": "src/contrib/BSgenome.Mmusculus.UCSC.mm9_1.4.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "dependsOnMe": [ "BSgenome.Mmusculus.UCSC.mm9.masked" ], "importsMe": [ "BSgenome.Mmusculus.UCSC.mm9.masked", "ChIPComp", "SPLINTER" ], "Rank": 52, "suggestsMe": [ "compEpiTools", "MEDME", "MMDiff2", "RCAS" ] }, "BSgenome.Mmusculus.UCSC.mm9.masked": { "Package": "BSgenome.Mmusculus.UCSC.mm9.masked", "Version": "1.3.99", "Depends": [ "BSgenome (>= 1.31.8)", "BSgenome.Mmusculus.UCSC.mm9" ], "Imports": [ "BSgenome", "BSgenome.Mmusculus.UCSC.mm9" ], "License": "Artistic-2.0", "MD5sum": "a5dadab14e55cdfc39649ede7a8483d5", "NeedsCompilation": "no", "Title": "Full masked genome sequences for Mus musculus (UCSC version mm9)", "Description": "Full genome sequences for Mus musculus (Mouse) as provided by UCSC (mm9, Jul. 2007) and stored in Biostrings objects. The sequences are the same as in BSgenome.Mmusculus.UCSC.mm9, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are \"active\" by default.", "biocViews": [ "AnnotationData", "BSgenome", "Genetics", "Mus_musculus" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Mus musculus", "source.ver": "src/contrib/BSgenome.Mmusculus.UCSC.mm9.masked_1.3.99.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 238, "suggestsMe": [ "r3Cseq" ] }, "BSgenome.Osativa.MSU.MSU7": { "Package": "BSgenome.Osativa.MSU.MSU7", "Version": "0.99.1", "Depends": [ "BSgenome (>= 1.28.0)" ], "Imports": [ "BSgenome" ], "License": "Artistic-2.0", "MD5sum": "459fe50be785d06ab680565aacca1c57", "NeedsCompilation": "no", "Title": "Oryza sativa full genome (MSU7)", "Description": "Oryza sativa full genome as provided by MSU (MSU7 Genome Release) and stored in Biostrings objects.", "biocViews": [ "AnnotationData", "BSgenome", "Genetics", "Oryza_sativa" ], "Author": "Wen Yao ", "Maintainer": "Wen Yao ", "organism": "Oryza sativa", "source.ver": "src/contrib/BSgenome.Osativa.MSU.MSU7_0.99.1.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 246 }, "BSgenome.Ptroglodytes.UCSC.panTro2": { "Package": "BSgenome.Ptroglodytes.UCSC.panTro2", "Version": "1.4.0", "Depends": [ "BSgenome (>= 1.33.5)" ], "Imports": [ "BSgenome" ], "Suggests": [ "GenomicFeatures" ], "License": "Artistic-2.0", "MD5sum": "780200c315779ac75fcf0bdeb9a2eb8c", "NeedsCompilation": "no", "Title": "Full genome sequences for Pan troglodytes (UCSC version panTro2)", "Description": "Full genome sequences for Pan troglodytes (Chimp) as provided by UCSC (panTro2, Mar. 2006) and stored in Biostrings objects.", "biocViews": [ "AnnotationData", "BSgenome", "Genetics", "Pan_troglodytes" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Pan troglodytes", "source.ver": "src/contrib/BSgenome.Ptroglodytes.UCSC.panTro2_1.4.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "dependsOnMe": [ "BSgenome.Ptroglodytes.UCSC.panTro2.masked" ], "importsMe": [ "BSgenome.Ptroglodytes.UCSC.panTro2.masked" ], "Rank": 591 }, "BSgenome.Ptroglodytes.UCSC.panTro2.masked": { "Package": "BSgenome.Ptroglodytes.UCSC.panTro2.masked", "Version": "1.3.99", "Depends": [ "BSgenome (>= 1.31.8)", "BSgenome.Ptroglodytes.UCSC.panTro2" ], "Imports": [ "BSgenome", "BSgenome.Ptroglodytes.UCSC.panTro2" ], "License": "Artistic-2.0", "MD5sum": "e6d069be23712b483b4e4c71554594cf", "NeedsCompilation": "no", "Title": "Full masked genome sequences for Pan troglodytes (UCSC version panTro2)", "Description": "Full genome sequences for Pan troglodytes (Chimp) as provided by UCSC (panTro2, Mar. 2006) and stored in Biostrings objects. The sequences are the same as in BSgenome.Ptroglodytes.UCSC.panTro2, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are \"active\" by default.", "biocViews": [ "AnnotationData", "BSgenome", "Genetics", "Pan_troglodytes" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Pan troglodytes", "source.ver": "src/contrib/BSgenome.Ptroglodytes.UCSC.panTro2.masked_1.3.99.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 779 }, "BSgenome.Ptroglodytes.UCSC.panTro3": { "Package": "BSgenome.Ptroglodytes.UCSC.panTro3", "Version": "1.4.0", "Depends": [ "BSgenome (>= 1.33.5)" ], "Imports": [ "BSgenome" ], "Suggests": [ "GenomicFeatures" ], "License": "Artistic-2.0", "MD5sum": "4677c75befd60742f3fc2a54c7f60666", "NeedsCompilation": "no", "Title": "Full genome sequences for Pan troglodytes (UCSC version panTro3)", "Description": "Full genome sequences for Pan troglodytes (Chimp) as provided by UCSC (panTro3, Oct. 2010) and stored in Biostrings objects.", "biocViews": [ "AnnotationData", "BSgenome", "Genetics", "Pan_troglodytes" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Pan troglodytes", "source.ver": "src/contrib/BSgenome.Ptroglodytes.UCSC.panTro3_1.4.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "dependsOnMe": [ "BSgenome.Ptroglodytes.UCSC.panTro3.masked" ], "importsMe": [ "BSgenome.Ptroglodytes.UCSC.panTro3.masked" ], "Rank": 529 }, "BSgenome.Ptroglodytes.UCSC.panTro3.masked": { "Package": "BSgenome.Ptroglodytes.UCSC.panTro3.masked", "Version": "1.3.99", "Depends": [ "BSgenome (>= 1.31.8)", "BSgenome.Ptroglodytes.UCSC.panTro3" ], "Imports": [ "BSgenome", "BSgenome.Ptroglodytes.UCSC.panTro3" ], "License": "Artistic-2.0", "MD5sum": "89e96b3796d3b8e8793146597506e3f5", "NeedsCompilation": "no", "Title": "Full masked genome sequences for Pan troglodytes (UCSC version panTro3)", "Description": "Full genome sequences for Pan troglodytes (Chimp) as provided by UCSC (panTro3, Oct. 2010) and stored in Biostrings objects. The sequences are the same as in BSgenome.Ptroglodytes.UCSC.panTro3, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are \"active\" by default.", "biocViews": [ "AnnotationData", "BSgenome", "Genetics", "Pan_troglodytes" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Pan troglodytes", "source.ver": "src/contrib/BSgenome.Ptroglodytes.UCSC.panTro3.masked_1.3.99.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 726 }, "BSgenome.Ptroglodytes.UCSC.panTro5": { "Package": "BSgenome.Ptroglodytes.UCSC.panTro5", "Version": "1.4.2", "Depends": [ "BSgenome (>= 1.40.0)" ], "Imports": [ "BSgenome" ], "License": "Artistic-2.0", "MD5sum": "5b88573dd9c3ef838699b65934f8abe3", "NeedsCompilation": "no", "Title": "Full genome sequences for Pan troglodytes (UCSC version panTro5)", "Description": "Full genome sequences for Pan troglodytes (Chimp) as provided by UCSC (panTro5, May 2016) and stored in Biostrings objects.", "biocViews": [ "AnnotationData", "BSgenome", "Genetics", "Pan_troglodytes" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Pan troglodytes", "source.ver": "src/contrib/BSgenome.Ptroglodytes.UCSC.panTro5_1.4.2.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 591 }, "BSgenome.Ptroglodytes.UCSC.panTro6": { "Package": "BSgenome.Ptroglodytes.UCSC.panTro6", "Version": "1.4.2", "Depends": [ "BSgenome (>= 1.48.0)" ], "Imports": [ "BSgenome" ], "License": "Artistic-2.0", "MD5sum": "1df05d985374e9edc1dd7c3df5118338", "NeedsCompilation": "no", "Title": "Full genome sequences for Pan troglodytes (UCSC version panTro6)", "Description": "Full genome sequences for Pan troglodytes (Chimp) as provided by UCSC (panTro6, Jan. 2018) and stored in Biostrings objects.", "biocViews": [ "AnnotationData", "BSgenome", "Genetics", "Pan_troglodytes" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Pan troglodytes", "source.ver": "src/contrib/BSgenome.Ptroglodytes.UCSC.panTro6_1.4.2.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 934 }, "BSgenome.Rnorvegicus.UCSC.rn4": { "Package": "BSgenome.Rnorvegicus.UCSC.rn4", "Version": "1.4.0", "Depends": [ "BSgenome (>= 1.33.5)" ], "Imports": [ "BSgenome" ], "Suggests": [ "TxDb.Rnorvegicus.UCSC.rn4.ensGene" ], "License": "Artistic-2.0", "MD5sum": "3afe6729237781445d99ec38228ee1a8", "NeedsCompilation": "no", "Title": "Full genome sequences for Rattus norvegicus (UCSC version rn4)", "Description": "Full genome sequences for Rattus norvegicus (Rat) as provided by UCSC (rn4, Nov. 2004) and stored in Biostrings objects.", "biocViews": [ "AnnotationData", "BSgenome", "Genetics", "Rattus_norvegicus" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Rattus norvegicus", "source.ver": "src/contrib/BSgenome.Rnorvegicus.UCSC.rn4_1.4.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "dependsOnMe": [ "BSgenome.Rnorvegicus.UCSC.rn4.masked" ], "importsMe": [ "BSgenome.Rnorvegicus.UCSC.rn4.masked" ], "Rank": 359 }, "BSgenome.Rnorvegicus.UCSC.rn4.masked": { "Package": "BSgenome.Rnorvegicus.UCSC.rn4.masked", "Version": "1.3.99", "Depends": [ "BSgenome (>= 1.31.8)", "BSgenome.Rnorvegicus.UCSC.rn4" ], "Imports": [ "BSgenome", "BSgenome.Rnorvegicus.UCSC.rn4" ], "License": "Artistic-2.0", "MD5sum": "7e2ea7df588b6b10515e07ea3868c568", "NeedsCompilation": "no", "Title": "Full masked genome sequences for Rattus norvegicus (UCSC version rn4)", "Description": "Full genome sequences for Rattus norvegicus (Rat) as provided by UCSC (rn4, Nov. 2004) and stored in Biostrings objects. The sequences are the same as in BSgenome.Rnorvegicus.UCSC.rn4, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are \"active\" by default.", "biocViews": [ "AnnotationData", "BSgenome", "Genetics", "Rattus_norvegicus" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Rattus norvegicus", "source.ver": "src/contrib/BSgenome.Rnorvegicus.UCSC.rn4.masked_1.3.99.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 726 }, "BSgenome.Rnorvegicus.UCSC.rn5": { "Package": "BSgenome.Rnorvegicus.UCSC.rn5", "Version": "1.4.0", "Depends": [ "BSgenome (>= 1.33.5)" ], "Imports": [ "BSgenome" ], "Suggests": [ "TxDb.Rnorvegicus.UCSC.rn5.refGene" ], "License": "Artistic-2.0", "MD5sum": "723b1f3ced395ef638b2d68053b05c86", "NeedsCompilation": "no", "Title": "Full genome sequences for Rattus norvegicus (UCSC version rn5)", "Description": "Full genome sequences for Rattus norvegicus (Rat) as provided by UCSC (rn5, Mar. 2012) and stored in Biostrings objects.", "biocViews": [ "AnnotationData", "BSgenome", "Genetics", "Rattus_norvegicus" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Rattus norvegicus", "source.ver": "src/contrib/BSgenome.Rnorvegicus.UCSC.rn5_1.4.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "dependsOnMe": [ "BSgenome.Rnorvegicus.UCSC.rn5.masked" ], "importsMe": [ "BSgenome.Rnorvegicus.UCSC.rn5.masked" ], "Rank": 191, "suggestsMe": [ "BSgenome" ] }, "BSgenome.Rnorvegicus.UCSC.rn5.masked": { "Package": "BSgenome.Rnorvegicus.UCSC.rn5.masked", "Version": "1.3.99", "Depends": [ "BSgenome (>= 1.31.8)", "BSgenome.Rnorvegicus.UCSC.rn5" ], "Imports": [ "BSgenome", "BSgenome.Rnorvegicus.UCSC.rn5" ], "License": "Artistic-2.0", "MD5sum": "663233774b79012cb2cc08224ac275ed", "NeedsCompilation": "no", "Title": "Full masked genome sequences for Rattus norvegicus (UCSC version rn5)", "Description": "Full genome sequences for Rattus norvegicus (Rat) as provided by UCSC (rn5, Mar. 2012) and stored in Biostrings objects. The sequences are the same as in BSgenome.Rnorvegicus.UCSC.rn5, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are \"active\" by default.", "biocViews": [ "AnnotationData", "BSgenome", "Genetics", "Rattus_norvegicus" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Rattus norvegicus", "source.ver": "src/contrib/BSgenome.Rnorvegicus.UCSC.rn5.masked_1.3.99.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 337, "suggestsMe": [ "r3Cseq" ] }, "BSgenome.Rnorvegicus.UCSC.rn6": { "Package": "BSgenome.Rnorvegicus.UCSC.rn6", "Version": "1.4.1", "Depends": [ "BSgenome (>= 1.35.12)" ], "Imports": [ "BSgenome" ], "Suggests": [ "GenomicFeatures" ], "License": "Artistic-2.0", "MD5sum": "60d3fb201e0b1475912aaf681927096d", "NeedsCompilation": "no", "Title": "Full genome sequences for Rattus norvegicus (UCSC version rn6)", "Description": "Full genome sequences for Rattus norvegicus (Rat) as provided by UCSC (rn6, Jul. 2014) and stored in Biostrings objects.", "biocViews": [ "AnnotationData", "BSgenome", "Genetics", "Rattus_norvegicus" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Rattus norvegicus", "source.ver": "src/contrib/BSgenome.Rnorvegicus.UCSC.rn6_1.4.1.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 211, "suggestsMe": [ "msgbsR" ] }, "BSgenome.Scerevisiae.UCSC.sacCer1": { "Package": "BSgenome.Scerevisiae.UCSC.sacCer1", "Version": "1.4.0", "Depends": [ "BSgenome (>= 1.33.5)" ], "Imports": [ "BSgenome" ], "License": "Artistic-2.0", "MD5sum": "ad4c29c16a9635088bf13872b4a02ed4", "NeedsCompilation": "no", "Title": "Saccharomyces cerevisiae (Yeast) full genome (UCSC version sacCer1)", "Description": "Saccharomyces cerevisiae (Yeast) full genome as provided by UCSC (sacCer1, Oct. 2003) and stored in Biostrings objects.", "biocViews": [ "AnnotationData", "BSgenome", "Genetics", "Saccharomyces_cerevisiae" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Saccharomyces cerevisiae", "source.ver": "src/contrib/BSgenome.Scerevisiae.UCSC.sacCer1_1.4.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 221, "suggestsMe": [ "BSgenome" ] }, "BSgenome.Scerevisiae.UCSC.sacCer2": { "Package": "BSgenome.Scerevisiae.UCSC.sacCer2", "Version": "1.4.0", "Depends": [ "BSgenome (>= 1.33.5)" ], "Imports": [ "BSgenome" ], "License": "Artistic-2.0", "MD5sum": "f1025b4d0fa7891dc46301550163753e", "NeedsCompilation": "no", "Title": "Saccharomyces cerevisiae (Yeast) full genome (UCSC version sacCer2)", "Description": "Saccharomyces cerevisiae (Yeast) full genome as provided by UCSC (sacCer2, June 2008) and stored in Biostrings objects.", "biocViews": [ "AnnotationData", "BSgenome", "Genetics", "Saccharomyces_cerevisiae" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Saccharomyces cerevisiae", "source.ver": "src/contrib/BSgenome.Scerevisiae.UCSC.sacCer2_1.4.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 85, "suggestsMe": [ "GenomeInfoDb", "GenomicRanges", "R453Plus1Toolbox" ] }, "BSgenome.Scerevisiae.UCSC.sacCer3": { "Package": "BSgenome.Scerevisiae.UCSC.sacCer3", "Version": "1.4.0", "Depends": [ "BSgenome (>= 1.33.5)" ], "Imports": [ "BSgenome" ], "License": "Artistic-2.0", "MD5sum": "7f2d8bba69c3dcebf426d9b19a6bed30", "NeedsCompilation": "no", "Title": "Saccharomyces cerevisiae (Yeast) full genome (UCSC version sacCer3)", "Description": "Saccharomyces cerevisiae (Yeast) full genome as provided by UCSC (sacCer3, April 2011) and stored in Biostrings objects.", "biocViews": [ "AnnotationData", "BSgenome", "Genetics", "Saccharomyces_cerevisiae" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Saccharomyces cerevisiae", "source.ver": "src/contrib/BSgenome.Scerevisiae.UCSC.sacCer3_1.4.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 97, "suggestsMe": [ "DNAshapeR", "gmapR" ], "dependsOnMe": [ "generegulation" ] }, "BSgenome.Sscrofa.UCSC.susScr11": { "Package": "BSgenome.Sscrofa.UCSC.susScr11", "Version": "1.4.2", "Depends": [ "BSgenome (>= 1.48.0)" ], "Imports": [ "BSgenome" ], "License": "Artistic-2.0", "MD5sum": "db22832229e31e1a629d107df522dff9", "NeedsCompilation": "no", "Title": "Full genome sequences for Sus scrofa (UCSC version susScr11)", "Description": "Full genome sequences for Sus scrofa (Pig) as provided by UCSC (susScr11, Feb. 2017) and stored in Biostrings objects.", "biocViews": [ "AnnotationData", "BSgenome", "Genetics", "Sus_scrofa" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Sus scrofa", "source.ver": "src/contrib/BSgenome.Sscrofa.UCSC.susScr11_1.4.2.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 916 }, "BSgenome.Sscrofa.UCSC.susScr3": { "Package": "BSgenome.Sscrofa.UCSC.susScr3", "Version": "1.4.0", "Depends": [ "BSgenome (>= 1.33.5)" ], "Imports": [ "BSgenome" ], "License": "Artistic-2.0", "MD5sum": "0457ca52a81c9d7ceadad5830169e6cf", "NeedsCompilation": "no", "Title": "Full genome sequences for Sus scrofa (UCSC version susScr3)", "Description": "Full genome sequences for Sus scrofa (Pig) as provided by UCSC (susScr3, Aug. 2011) and stored in Biostrings objects.", "biocViews": [ "AnnotationData", "BSgenome", "Genetics", "Sus_scrofa" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Sus scrofa", "source.ver": "src/contrib/BSgenome.Sscrofa.UCSC.susScr3_1.4.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "dependsOnMe": [ "BSgenome.Sscrofa.UCSC.susScr3.masked" ], "importsMe": [ "BSgenome.Sscrofa.UCSC.susScr3.masked" ], "Rank": 359 }, "BSgenome.Sscrofa.UCSC.susScr3.masked": { "Package": "BSgenome.Sscrofa.UCSC.susScr3.masked", "Version": "1.3.99", "Depends": [ "BSgenome (>= 1.31.11)", "BSgenome.Sscrofa.UCSC.susScr3" ], "Imports": [ "BSgenome", "BSgenome.Sscrofa.UCSC.susScr3" ], "License": "Artistic-2.0", "MD5sum": "fd240651d22d169fd1e27a2b66e40dd7", "NeedsCompilation": "no", "Title": "Full masked genome sequences for Sus scrofa (UCSC version susScr3)", "Description": "Full genome sequences for Sus scrofa (Pig) as provided by UCSC (susScr3, Aug. 2011) and stored in Biostrings objects. The sequences are the same as in BSgenome.Sscrofa.UCSC.susScr3, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are \"active\" by default.", "biocViews": [ "AnnotationData", "BSgenome", "Genetics", "Sus_scrofa" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Sus scrofa", "source.ver": "src/contrib/BSgenome.Sscrofa.UCSC.susScr3.masked_1.3.99.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 591 }, "BSgenome.Tgondii.ToxoDB.7.0": { "Package": "BSgenome.Tgondii.ToxoDB.7.0", "Version": "0.99.0", "Depends": [ "BSgenome (>= 1.21.3)" ], "Imports": [ "BSgenome" ], "License": "GPL 3", "MD5sum": "8f204871f73f8d1c5194f3748e28878e", "NeedsCompilation": "no", "Title": "Toxoplasma gondii ME49 (ToxoDB-7.0)", "Description": "Toxoplasma gondii ME49 genome Release 7.0 available at http://www.toxodb.org", "biocViews": [ "AnnotationData", "Genetics", "Toxoplasma_gondii" ], "Author": "Matthew Croken , Olivier Lucas ", "Maintainer": "Matthew Croken ", "organism": "Toxoplasma gondii", "source.ver": "src/contrib/BSgenome.Tgondii.ToxoDB.7.0_0.99.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 529 }, "BSgenome.Tguttata.UCSC.taeGut1": { "Package": "BSgenome.Tguttata.UCSC.taeGut1", "Version": "1.4.0", "Depends": [ "BSgenome (>= 1.33.5)" ], "Imports": [ "BSgenome" ], "License": "Artistic-2.0", "MD5sum": "9753d9568d2a866a627673a518a1dd8a", "NeedsCompilation": "no", "Title": "Full genome sequences for Taeniopygia guttata (UCSC version taeGut1)", "Description": "Full genome sequences for Taeniopygia guttata (Zebra finch) as provided by UCSC (taeGut1, Jul. 2008) and stored in Biostrings objects.", "biocViews": [ "AnnotationData", "BSgenome", "Genetics", "Taeniopygia_guttata" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Taeniopygia guttata", "source.ver": "src/contrib/BSgenome.Tguttata.UCSC.taeGut1_1.4.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "dependsOnMe": [ "BSgenome.Tguttata.UCSC.taeGut1.masked" ], "importsMe": [ "BSgenome.Tguttata.UCSC.taeGut1.masked" ], "Rank": 591 }, "BSgenome.Tguttata.UCSC.taeGut1.masked": { "Package": "BSgenome.Tguttata.UCSC.taeGut1.masked", "Version": "1.3.99", "Depends": [ "BSgenome (>= 1.31.11)", "BSgenome.Tguttata.UCSC.taeGut1" ], "Imports": [ "BSgenome", "BSgenome.Tguttata.UCSC.taeGut1" ], "License": "Artistic-2.0", "MD5sum": "63684abb5b330bb54ff89fe78f2e6444", "NeedsCompilation": "no", "Title": "Full masked genome sequences for Taeniopygia guttata (UCSC version taeGut1)", "Description": "Full genome sequences for Taeniopygia guttata (Zebra finch) as provided by UCSC (taeGut1, Jul. 2008) and stored in Biostrings objects. The sequences are the same as in BSgenome.Tguttata.UCSC.taeGut1, except that each of them has the 2 following masks on top: (1) the mask of assembly gaps (AGAPS mask), and (2) the mask of intra-contig ambiguities (AMB mask). Both masks are \"active\" by default.", "biocViews": [ "AnnotationData", "BSgenome", "Genetics", "Taeniopygia_guttata" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Taeniopygia guttata", "source.ver": "src/contrib/BSgenome.Tguttata.UCSC.taeGut1.masked_1.3.99.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 726 }, "BSgenome.Tguttata.UCSC.taeGut2": { "Package": "BSgenome.Tguttata.UCSC.taeGut2", "Version": "1.4.2", "Depends": [ "BSgenome (>= 1.36.0)" ], "Imports": [ "BSgenome" ], "License": "Artistic-2.0", "MD5sum": "1d39678fb060e643f7e9c4ec25e828c0", "NeedsCompilation": "no", "Title": "Full genome sequences for Taeniopygia guttata (UCSC version taeGut2)", "Description": "Full genome sequences for Taeniopygia guttata (Zebra finch) as provided by UCSC (taeGut2, Feb. 2013) and stored in Biostrings objects.", "biocViews": [ "AnnotationData", "BSgenome", "Genetics", "Taeniopygia_guttata" ], "Author": "The Bioconductor Dev Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Taeniopygia guttata", "source.ver": "src/contrib/BSgenome.Tguttata.UCSC.taeGut2_1.4.2.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 529 }, "BSgenome.Vvinifera.URGI.IGGP12Xv0": { "Package": "BSgenome.Vvinifera.URGI.IGGP12Xv0", "Version": "0.1", "Depends": [ "BSgenome (>= 1.38.0)" ], "Imports": [ "BSgenome" ], "License": "CC0", "MD5sum": "3f791de6d699325a97080cd98be86d89", "NeedsCompilation": "no", "Title": "Full reference nuclear genome sequences for Vitis vinifera subsp. vinifera PN40024 (IGGP version 12Xv0)", "Description": "Full reference nuclear genome sequences for Vitis vinifera subsp. vinifera PN40024 (derived from Pinot Noir and close to homozygosity after 6-9 rounds of selfing) as assembled by the IGGP (version 12Xv0) and available at the URGI (INRA)", "biocViews": [ "AnnotationData", "BSgenome", "Genetics", "Vitis_vinifera" ], "Author": "Timothee Flutre [cre,aut]", "Maintainer": "Timothee Flutre ", "organism": "Vitis vinifera vinifera", "source.ver": "src/contrib/BSgenome.Vvinifera.URGI.IGGP12Xv0_0.1.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "BSgenome.Vvinifera.URGI.IGGP12Xv2": { "Package": "BSgenome.Vvinifera.URGI.IGGP12Xv2", "Version": "0.1", "Depends": [ "BSgenome (>= 1.38.0)" ], "Imports": [ "BSgenome" ], "License": "CC0", "MD5sum": "95472e574ab46327c19e241c381b26a2", "NeedsCompilation": "no", "Title": "Full reference nuclear genome sequences for Vitis vinifera subsp. vinifera PN40024 (IGGP version 12Xv2)", "Description": "Full reference nuclear genome sequences for Vitis vinifera subsp. vinifera PN40024 (derived from Pinot Noir and close to homozygosity after 6-9 rounds of selfing) as assembled by the IGGP (version 12Xv2) and available at the URGI (INRA)", "biocViews": [ "AnnotationData", "BSgenome", "Genetics", "Vitis_vinifera" ], "Author": "Timothee Flutre [cre,aut]", "Maintainer": "Timothee Flutre ", "organism": "Vitis vinifera vinifera", "source.ver": "src/contrib/BSgenome.Vvinifera.URGI.IGGP12Xv2_0.1.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 591 }, "BSgenome.Vvinifera.URGI.IGGP8X": { "Package": "BSgenome.Vvinifera.URGI.IGGP8X", "Version": "0.1", "Depends": [ "BSgenome (>= 1.38.0)" ], "Imports": [ "BSgenome" ], "License": "CC0", "MD5sum": "fccaf60e5c9352b9c454f7a8ecac2a20", "NeedsCompilation": "no", "Title": "Full reference nuclear genome sequences for Vitis vinifera subsp. vinifera PN40024 (IGGP version 8X)", "Description": "Full reference nuclear genome sequences for Vitis vinifera subsp. vinifera PN40024 (derived from Pinot Noir and close to homozygosity after 6-9 rounds of selfing) as assembled by the IGGP (version 8X) and available at the URGI (INRA). More details in Jaillon et al (Nature, 2007).", "biocViews": [ "AnnotationData", "BSgenome", "Genetics", "Vitis_vinifera" ], "Author": "Timothee Flutre [cre,aut]", "Maintainer": "Timothee Flutre ", "organism": "Vitis vinifera vinifera", "source.ver": "src/contrib/BSgenome.Vvinifera.URGI.IGGP8X_0.1.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 726 }, "bsubtiliscdf": { "Package": "bsubtiliscdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "7d7893d28c601206805819ae0e49b31b", "NeedsCompilation": "no", "Title": "bsubtiliscdf", "Description": "A package containing an environment representing the Bsubtilis.CDF file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Bacillus_subtilis", "bsubtilis", "cdf" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/bsubtiliscdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "bsubtilisprobe": { "Package": "bsubtilisprobe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "83568fcea2122350b7ce982e79b7ec53", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type bsubtilis", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Bsubtilis\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Bacillus_subtilis", "bsubtilis", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/bsubtilisprobe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 726 }, "canine.db": { "Package": "canine.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Cf.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "313097118354c68b3b6fb348eb55720e", "NeedsCompilation": "no", "Title": "Affymetrix canine annotation data (chip canine)", "Description": "Affymetrix canine annotation data (chip canine) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "Canis_familiaris", "ChipDb", "canine" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Canis familiaris", "manufacturer": "Affymetrix", "source.ver": "src/contrib/canine.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 591 }, "canine.db0": { "Package": "canine.db0", "Version": "3.6.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.41.4)" ], "Imports": [ "methods", "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "ca0f9db891d3d65ae7957926d06cc49f", "NeedsCompilation": "no", "Title": "Base Level Annotation databases for canine", "Description": "Base annotation databases for canine, intended ONLY to be used by AnnotationDbi to produce regular annotation packages.", "biocViews": [ "AnnotationData", "Canis_familiaris", "db0" ], "Author": "Bioconductor Core Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Canis familiaris", "source.ver": "src/contrib/canine.db0_3.6.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "canine2.db": { "Package": "canine2.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Cf.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "5c393ea8e91c4d3eb08137bc2f301ca7", "NeedsCompilation": "no", "Title": "Affymetrix canine2 annotation data (chip canine2)", "Description": "Affymetrix canine2 annotation data (chip canine2) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "Canis_familiaris", "ChipDb", "canine2" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Canis familiaris", "manufacturer": "Affymetrix", "source.ver": "src/contrib/canine2.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "canine2cdf": { "Package": "canine2cdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "78740cde98c75e6680470564a4df74c3", "NeedsCompilation": "no", "Title": "canine2cdf", "Description": "A package containing an environment representing the Canine_2.cdf file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Canis_familiaris", "canine2", "cdf" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/canine2cdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 396 }, "canine2probe": { "Package": "canine2probe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "7de0f4ea616e8662dc2eaa9ab78d1f13", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type canine2", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Canine\\_2\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Canis_familiaris", "canine2", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/canine2probe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 591 }, "caninecdf": { "Package": "caninecdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "656f845cc66890015a4e13c5304ec262", "NeedsCompilation": "no", "Title": "caninecdf", "Description": "A package containing an environment representing the Canine.cdf file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Canis_familiaris", "canine", "cdf" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/caninecdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 591 }, "canineprobe": { "Package": "canineprobe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "e5467bc9b7e54c5adce6b409ba7df767", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type canine", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Canine\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Canis_familiaris", "canine", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/canineprobe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "celegans.db": { "Package": "celegans.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Ce.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "fb4631ee29a20c20d5766aed4c04cac1", "NeedsCompilation": "no", "Title": "Affymetrix celegans annotation data (chip celegans)", "Description": "Affymetrix celegans annotation data (chip celegans) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "Caenorhabditis_elegans", "ChipDb", "celegans" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Caenorhabditis elegans", "manufacturer": "Affymetrix", "source.ver": "src/contrib/celegans.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 211 }, "celeganscdf": { "Package": "celeganscdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "1098cd99bfc5000bf9858e4a3acaf452", "NeedsCompilation": "no", "Title": "celeganscdf", "Description": "A package containing an environment representing the Celegans.CDF file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Caenorhabditis_elegans", "cdf", "celegans" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/celeganscdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 233 }, "celegansprobe": { "Package": "celegansprobe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "7454bba10ff2dd7c03bfe0f9d450f148", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type celegans", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was C\\_elegans\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Caenorhabditis_elegans", "celegans", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/celegansprobe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 529 }, "ChemmineDrugs": { "Package": "ChemmineDrugs", "Version": "1.0.0", "Depends": [ "R (>= 2.10.0)", "ChemmineR" ], "Imports": [ "BiocGenerics", "RSQLite" ], "Suggests": [ "BiocStyle", "knitcitations", "knitr" ], "License": "Artistic-2.0", "MD5sum": "a2d92c1c831cb33db29a838c77ce4f97", "NeedsCompilation": "no", "Title": "DrugBank and DUD data sets", "Description": "An annotation package for use with ChemmineR. This package includes data from DrugBank and DUD.", "biocViews": [ "AnnotationData", "CustomDBSchema" ], "Author": "Kevin Horan", "Maintainer": "Kevin Horan ", "VignetteBuilder": "knitr", "source.ver": "src/contrib/ChemmineDrugs_1.0.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 244, "suggestsMe": [ "ChemmineR" ] }, "chicken.db": { "Package": "chicken.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Gg.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "e093b861c4688cf10e53a3124ee8bfc0", "NeedsCompilation": "no", "Title": "Affymetrix chicken annotation data (chip chicken)", "Description": "Affymetrix chicken annotation data (chip chicken) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Gallus_gallus", "chicken" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Gallus gallus", "manufacturer": "Affymetrix", "source.ver": "src/contrib/chicken.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 200 }, "chicken.db0": { "Package": "chicken.db0", "Version": "3.6.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.41.4)" ], "Imports": [ "methods", "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "eb947d2b90efc3eab350a450430c62c2", "NeedsCompilation": "no", "Title": "Base Level Annotation databases for chicken", "Description": "Base annotation databases for chicken, intended ONLY to be used by AnnotationDbi to produce regular annotation packages.", "biocViews": [ "AnnotationData", "Gallus_gallus", "db0" ], "Author": "Bioconductor Core Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Gallus gallus", "source.ver": "src/contrib/chicken.db0_3.6.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 726 }, "chickencdf": { "Package": "chickencdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "ab0097b4b7b6c4d94360feb84ab69972", "NeedsCompilation": "no", "Title": "chickencdf", "Description": "A package containing an environment representing the Chicken.cdf file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Gallus_gallus", "cdf", "chicken" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/chickencdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 268 }, "chickenprobe": { "Package": "chickenprobe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "b33599081ce1ba768ff7992e143c01d0", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type chicken", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Chicken\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Gallus_gallus", "chicken", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/chickenprobe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 591 }, "chimp.db0": { "Package": "chimp.db0", "Version": "3.6.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.41.4)" ], "Imports": [ "methods", "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "92062176dff324ae6d8ea1c829f9cffc", "NeedsCompilation": "no", "Title": "Base Level Annotation databases for chimp", "Description": "Base annotation databases for chimp, intended ONLY to be used by AnnotationDbi to produce regular annotation packages.", "biocViews": [ "AnnotationData", "Pan_troglodytes", "db0" ], "Author": "Bioconductor Core Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Pan troglodytes", "source.ver": "src/contrib/chimp.db0_3.6.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "citruscdf": { "Package": "citruscdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "4af821a0c1ae1adf42b7dc5ce7458593", "NeedsCompilation": "no", "Title": "citruscdf", "Description": "A package containing an environment representing the Citrus.cdf file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Citrus_sp", "cdf", "citrus" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/citruscdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "citrusprobe": { "Package": "citrusprobe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "259b114f96d5307c447d000bd27a7d15", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type citrus", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Citrus\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Citrus_sp", "citrus", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/citrusprobe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 726 }, "clariomdhumanprobeset.db": { "Package": "clariomdhumanprobeset.db", "Version": "8.7.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.39.4)", "org.Hs.eg.db (>= 3.4.2)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "3f390b06a44187e10e4e8a60af16375b", "NeedsCompilation": "no", "Title": "Affymetrix clariomdhuman annotation data (chip clariomdhumanprobeset)", "Description": "Affymetrix clariomdhuman annotation data (chip clariomdhumanprobeset) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Homo_sapiens", "clariomdhumanprobeset" ], "Author": "James W. MacDonald", "Maintainer": "Biocore Package Maintainer ", "organism": "Homo sapiens", "manufacturer": "Affymetrix", "source.ver": "src/contrib/clariomdhumanprobeset.db_8.7.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 268 }, "clariomdhumantranscriptcluster.db": { "Package": "clariomdhumantranscriptcluster.db", "Version": "8.7.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.39.4)", "org.Hs.eg.db (>= 3.4.2)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "a460203ad96a4ada92b495ac0811cbe3", "NeedsCompilation": "no", "Title": "Affymetrix clariomdhuman annotation data (chip clariomdhumantranscriptcluster)", "Description": "Affymetrix clariomdhuman annotation data (chip clariomdhumantranscriptcluster) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Homo_sapiens", "clariomdhumantranscriptcluster" ], "Author": "James W. MacDonald", "Maintainer": "Biocore Package Maintainer ", "organism": "Homo sapiens", "manufacturer": "Affymetrix", "source.ver": "src/contrib/clariomdhumantranscriptcluster.db_8.7.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 225 }, "clariomshumanhttranscriptcluster.db": { "Package": "clariomshumanhttranscriptcluster.db", "Version": "8.7.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.39.4)", "org.Hs.eg.db (>= 3.4.2)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "fce4e730f50b068d8f91319754f8024f", "NeedsCompilation": "no", "Title": "Affymetrix clariomshumanht annotation data (chip clariomshumanhttranscriptcluster)", "Description": "Affymetrix clariomshumanht annotation data (chip clariomshumanhttranscriptcluster) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Homo_sapiens", "clariomshumanhttranscriptcluster" ], "Author": "James W. MacDonald", "Maintainer": "Biocore Package Maintainer ", "organism": "Homo sapiens", "manufacturer": "Affymetrix", "source.ver": "src/contrib/clariomshumanhttranscriptcluster.db_8.7.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 306 }, "clariomshumantranscriptcluster.db": { "Package": "clariomshumantranscriptcluster.db", "Version": "8.7.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.39.4)", "org.Hs.eg.db (>= 3.4.2)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "0b92969a4bb4a2d8e972602f68c7ad1b", "NeedsCompilation": "no", "Title": "Affymetrix clariomshuman annotation data (chip clariomshumantranscriptcluster)", "Description": "Affymetrix clariomshuman annotation data (chip clariomshumantranscriptcluster) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Homo_sapiens", "clariomshumantranscriptcluster" ], "Author": "James W. MacDonald", "Maintainer": "Biocore Package Maintainer ", "organism": "Homo sapiens", "manufacturer": "Affymetrix", "source.ver": "src/contrib/clariomshumantranscriptcluster.db_8.7.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 238 }, "clariomsmousehttranscriptcluster.db": { "Package": "clariomsmousehttranscriptcluster.db", "Version": "8.7.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.39.4)", "org.Mm.eg.db (>= 3.4.2)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "ba6fdb1816669b4ffb2707a0fe89ef59", "NeedsCompilation": "no", "Title": "Affymetrix clariomsmouseht annotation data (chip clariomsmousehttranscriptcluster)", "Description": "Affymetrix clariomsmouseht annotation data (chip clariomsmousehttranscriptcluster) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Mus_musculus", "clariomsmousehttranscriptcluster" ], "Author": "James W. MacDonald", "Maintainer": "Biocore Package Maintainer ", "organism": "Mus musculus", "manufacturer": "Affymetrix", "source.ver": "src/contrib/clariomsmousehttranscriptcluster.db_8.7.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 319 }, "clariomsmousetranscriptcluster.db": { "Package": "clariomsmousetranscriptcluster.db", "Version": "8.7.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.39.4)", "org.Mm.eg.db (>= 3.4.2)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "a70687be504281a4ec08c0535da4121f", "NeedsCompilation": "no", "Title": "Affymetrix clariomsmouse annotation data (chip clariomsmousetranscriptcluster)", "Description": "Affymetrix clariomsmouse annotation data (chip clariomsmousetranscriptcluster) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Mus_musculus", "clariomsmousetranscriptcluster" ], "Author": "James W. MacDonald", "Maintainer": "Biocore Package Maintainer ", "organism": "Mus musculus", "manufacturer": "Affymetrix", "source.ver": "src/contrib/clariomsmousetranscriptcluster.db_8.7.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 268 }, "clariomsrathttranscriptcluster.db": { "Package": "clariomsrathttranscriptcluster.db", "Version": "8.7.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.39.4)", "org.Rn.eg.db (>= 3.4.2)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "50399fde7380b015da941f36362a3f78", "NeedsCompilation": "no", "Title": "Affymetrix clariomsratht annotation data (chip clariomsrathttranscriptcluster)", "Description": "Affymetrix clariomsratht annotation data (chip clariomsrathttranscriptcluster) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Rattus_norvegicus", "clariomsrathttranscriptcluster" ], "Author": "James W. MacDonald", "Maintainer": "Biocore Package Maintainer ", "organism": "Rattus norvegicus", "manufacturer": "Affymetrix", "source.ver": "src/contrib/clariomsrathttranscriptcluster.db_8.7.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "clariomsrattranscriptcluster.db": { "Package": "clariomsrattranscriptcluster.db", "Version": "8.7.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.39.4)", "org.Rn.eg.db (>= 3.4.2)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "34d0c761a038f5f28f6b5db4b7e575a7", "NeedsCompilation": "no", "Title": "Affymetrix clariomsrat annotation data (chip clariomsrattranscriptcluster)", "Description": "Affymetrix clariomsrat annotation data (chip clariomsrattranscriptcluster) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Rattus_norvegicus", "clariomsrattranscriptcluster" ], "Author": "James W. MacDonald", "Maintainer": "Biocore Package Maintainer ", "organism": "Rattus norvegicus", "manufacturer": "Affymetrix", "source.ver": "src/contrib/clariomsrattranscriptcluster.db_8.7.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 529 }, "cMAP": { "Package": "cMAP", "Version": "1.15.1", "Depends": [ "R(>= 2.4.0)" ], "License": "LGPL", "MD5sum": "dbf8df4d4540151936884e1c5d747bcf", "NeedsCompilation": "no", "Title": "A data package containing annotation data for cMAP", "Description": "Annotation data file for cMAP assembled using data from public data repositories", "Author": "Ting-Yuan Liu, ChenWei Lin, Seth Falcon, Jianhua Zhang, James W. MacDonald", "Maintainer": "Biocore Data Team ", "source.ver": "src/contrib/cMAP_1.15.1.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 121, "biocViews": [ "AnnotationData" ], "dependsOnMe": [ "pathRender" ] }, "cottoncdf": { "Package": "cottoncdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "b9d2a4b43235c6e531b78cca006e84b2", "NeedsCompilation": "no", "Title": "cottoncdf", "Description": "A package containing an environment representing the Cotton.cdf file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Gossypium_arboretum", "Gossypium_barbadense", "Gossypium_hirsutum", "Gossypium_raimondii", "cdf", "cotton" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/cottoncdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "cottonprobe": { "Package": "cottonprobe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "032fa94876685820d94526fd56dd0b65", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type cotton", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Cotton\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Gossypium_arboretum", "Gossypium_barbadense", "Gossypium_hirsutum", "Gossypium_raimondii", "cotton", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/cottonprobe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "cyp450cdf": { "Package": "cyp450cdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "7923c4d24b7b654d0f59d52ed2258eb9", "NeedsCompilation": "no", "Title": "cyp450cdf", "Description": "A package containing an environment representing the CYP450.CDF file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "cyp450" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/cyp450cdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "DO.db": { "Package": "DO.db", "Version": "2.9", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.9.7)" ], "Imports": [ "methods", "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "63dda6d46d2fe40c52a2e79260a7fb9d", "NeedsCompilation": "no", "Title": "A set of annotation maps describing the entire Disease Ontology", "Description": "A set of annotation maps describing the entire Disease Ontology assembled using data from DO", "biocViews": [ "AnnotationData", "FunctionalAnnotation" ], "Author": "Jiang Li", "Maintainer": "Jiang Li ", "source.ver": "src/contrib/DO.db_2.9.tar.gz", "vignettes": [ "vignettes/DO.db/inst/doc/DO.db.pdf" ], "vignetteTitles": [ "DO.db Overview" ], "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rfiles": [ "vignettes/DO.db/inst/doc/DO.db.R" ], "Rank": 6, "suggestsMe": [ "gwascat" ], "importsMe": [ "DOSE" ] }, "drosgenome1.db": { "Package": "drosgenome1.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Dm.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "44bc6356bc04226cba8cb2f3544c4688", "NeedsCompilation": "no", "Title": "Affymetrix Drosophila Genome Array annotation data (chip drosgenome1)", "Description": "Affymetrix Drosophila Genome Array annotation data (chip drosgenome1) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Drosophila_melanogaster", "drosgenome1" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Drosophila melanogaster", "manufacturer": "Affymetrix", "source.ver": "src/contrib/drosgenome1.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 268, "suggestsMe": [ "tigre" ] }, "drosgenome1cdf": { "Package": "drosgenome1cdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "e12983f2148c10ef1faa50f810b6eee3", "NeedsCompilation": "no", "Title": "drosgenome1cdf", "Description": "A package containing an environment representing the DrosGenome1.CDF file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Drosophila_melanogaster", "cdf", "drosgenome1" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/drosgenome1cdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 306 }, "drosgenome1probe": { "Package": "drosgenome1probe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "1f12abdfeee65e8a6554f57507d86fb3", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type drosgenome1", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was DrosGenome1\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Drosophila_melanogaster", "drosgenome1", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/drosgenome1probe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 726 }, "drosophila2.db": { "Package": "drosophila2.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Dm.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "04a372eff398f79691216ed9fcc34bc8", "NeedsCompilation": "no", "Title": "Affymetrix Drosophila Genome 2.0 Array annotation data (chip drosophila2)", "Description": "Affymetrix Drosophila Genome 2.0 Array annotation data (chip drosophila2) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Drosophila_melanogaster", "drosophila2" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Drosophila melanogaster", "manufacturer": "Affymetrix", "source.ver": "src/contrib/drosophila2.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 123 }, "drosophila2cdf": { "Package": "drosophila2cdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "3323e723c133ff2b6188e22bebf3e20a", "NeedsCompilation": "no", "Title": "drosophila2cdf", "Description": "A package containing an environment representing the Drosophila_2.cdf file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Drosophila_melanogaster", "cdf", "drosophila2" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/drosophila2cdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 186 }, "drosophila2probe": { "Package": "drosophila2probe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "ba0251902ea0a5f0db61105bdcdc3530", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type drosophila2", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Drosophila\\_2\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Drosophila_melanogaster", "drosophila2", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/drosophila2probe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 171, "suggestsMe": [ "Biostrings", "XVector" ] }, "ecoli2.db": { "Package": "ecoli2.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.EcK12.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "1fe0877a59b63453df6667944818e66b", "NeedsCompilation": "no", "Title": "Affymetrix E. coli Genome 2.0 Array annotation data (chip ecoli2)", "Description": "Affymetrix E. coli Genome 2.0 Array annotation data (chip ecoli2) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Escherichia_coli", "ecoli2" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Escherichia coli", "manufacturer": "Affymetrix", "source.ver": "src/contrib/ecoli2.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 396 }, "ecoli2cdf": { "Package": "ecoli2cdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "b5cd1f05322ce494132ff649de9806c6", "NeedsCompilation": "no", "Title": "ecoli2cdf", "Description": "A package containing an environment representing the E_coli_2.cdf file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Escherichia_coli", "cdf", "ecoli2" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/ecoli2cdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 319 }, "ecoli2probe": { "Package": "ecoli2probe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "061fcb782ee9da3aa5108881677a4531", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type ecoli2", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was E\\_coli\\_2\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Escherichia_coli", "ecoli2", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/ecoli2probe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 591 }, "ecoliasv2cdf": { "Package": "ecoliasv2cdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "d7771ca1648b26a6af5bfb7582c6c778", "NeedsCompilation": "no", "Title": "ecoliasv2cdf", "Description": "A package containing an environment representing the Ecoli_ASv2.CDF file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Escherichia_coli", "cdf", "ecoliasv2" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/ecoliasv2cdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 591 }, "ecoliasv2probe": { "Package": "ecoliasv2probe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "b3e4332266184576279c3a478f286dc9", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type ecoliasv2", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was E\\_coli\\_Asv2\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Escherichia_coli", "ecoliasv2", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/ecoliasv2probe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 779 }, "ecolicdf": { "Package": "ecolicdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "4e664c1ac41a8ab68ef22f8a889b916c", "NeedsCompilation": "no", "Title": "ecolicdf", "Description": "A package containing an environment representing the Ecoli.CDF file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Escherichia_coli", "cdf", "ecoli" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/ecolicdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 200, "suggestsMe": [ "ecolitk" ], "dependsOnMe": [ "ecoliLeucine" ] }, "ecoliK12.db0": { "Package": "ecoliK12.db0", "Version": "3.6.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.41.4)" ], "Imports": [ "methods", "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "6245fbc05ae9a4b2156ec66b33351a0d", "NeedsCompilation": "no", "Title": "Base Level Annotation databases for E coli K12 Strain", "Description": "Base annotation databases for E coli K12 Strain, intended ONLY to be used by AnnotationDbi to produce regular annotation packages.", "biocViews": [ "AnnotationData", "Escherichia_coli", "db0" ], "Author": "Bioconductor Core Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Escherichia coli", "source.ver": "src/contrib/ecoliK12.db0_3.6.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 779 }, "ecoliprobe": { "Package": "ecoliprobe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "09586f9907bdbc43ba5ea4ce07c1f756", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type ecoli", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was E\\_coli\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Escherichia_coli", "ecoli", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/ecoliprobe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 726 }, "ecoliSakai.db0": { "Package": "ecoliSakai.db0", "Version": "3.6.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.41.4)" ], "Imports": [ "methods", "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "c9a0c589cb90949028c21f4d01598bcc", "NeedsCompilation": "no", "Title": "Base Level Annotation databases for E coli Sakai Strain", "Description": "Base annotation databases for E coli Sakai Strain, intended ONLY to be used by AnnotationDbi to produce regular annotation packages.", "biocViews": [ "AnnotationData", "Escherichia_coli", "db0" ], "Author": "Bioconductor Core Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Escherichia coli", "source.ver": "src/contrib/ecoliSakai.db0_3.6.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 824 }, "EnsDb.Hsapiens.v75": { "Package": "EnsDb.Hsapiens.v75", "Version": "2.99.0", "Depends": [ "ensembldb" ], "License": "Artistic-2.0", "MD5sum": "6c896475252903972bfc6c0eb0d8f334", "NeedsCompilation": "no", "Title": "Ensembl based annotation package", "Description": "Exposes an annotation databases generated from Ensembl.", "biocViews": [ "AnnotationData", "EnsDb", "Homo_sapiens" ], "Author": "Johannes Rainer", "Maintainer": "Johannes Rainer ", "organism": "Homo_sapiens", "source.ver": "src/contrib/EnsDb.Hsapiens.v75_2.99.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 34, "suggestsMe": [ "AnnotationDbi", "biovizBase", "ChIPpeakAnno", "ggbio", "TFutils", "TVTB", "TxRegInfra" ], "importsMe": [ "MetaboSignal" ] }, "EnsDb.Hsapiens.v79": { "Package": "EnsDb.Hsapiens.v79", "Version": "2.99.0", "Depends": [ "ensembldb" ], "License": "Artistic-2.0", "MD5sum": "16b5629805c07649b2aa501d34fcc588", "NeedsCompilation": "no", "Title": "Ensembl based annotation package", "Description": "Exposes an annotation databases generated from Ensembl.", "biocViews": [ "AnnotationData", "EnsDb", "Homo_sapiens" ], "Author": "Johannes Rainer", "Maintainer": "Johannes Rainer ", "organism": "Homo_sapiens", "source.ver": "src/contrib/EnsDb.Hsapiens.v79_2.99.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 83, "suggestsMe": [ "ChIPpeakAnno", "recount" ] }, "EnsDb.Hsapiens.v86": { "Package": "EnsDb.Hsapiens.v86", "Version": "2.99.0", "Depends": [ "ensembldb" ], "License": "Artistic-2.0", "MD5sum": "0c9e52512ff6dbbbdb754c4d41149939", "NeedsCompilation": "no", "Title": "Ensembl based annotation package", "Description": "Exposes an annotation databases generated from Ensembl.", "biocViews": [ "AnnotationData", "EnsDb", "Homo_sapiens" ], "Author": "Johannes Rainer", "Maintainer": "Johannes Rainer ", "organism": "Homo_sapiens", "source.ver": "src/contrib/EnsDb.Hsapiens.v86_2.99.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 36, "suggestsMe": [ "CHARGE", "ensembldb", "Pbase", "wiggleplotr" ], "importsMe": [ "metagene" ] }, "EnsDb.Mmusculus.v75": { "Package": "EnsDb.Mmusculus.v75", "Version": "2.99.0", "Depends": [ "ensembldb" ], "License": "Artistic-2.0", "MD5sum": "081bf6f90ff77031b634b4fe32e00be8", "NeedsCompilation": "no", "Title": "Ensembl based annotation package", "Description": "Exposes an annotation databases generated from Ensembl.", "biocViews": [ "AnnotationData", "EnsDb", "Mus_musculus" ], "Author": "Johannes Rainer", "Maintainer": "Johannes Rainer ", "organism": "Mus_musculus", "source.ver": "src/contrib/EnsDb.Mmusculus.v75_2.99.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 238 }, "EnsDb.Mmusculus.v79": { "Package": "EnsDb.Mmusculus.v79", "Version": "2.99.0", "Depends": [ "ensembldb" ], "License": "Artistic-2.0", "MD5sum": "28bbab743b0d2d550dbfa0bcd3274fad", "NeedsCompilation": "no", "Title": "Ensembl based annotation package", "Description": "Exposes an annotation databases generated from Ensembl.", "biocViews": [ "AnnotationData", "EnsDb", "Mus_musculus" ], "Author": "Johannes Rainer", "Maintainer": "Johannes Rainer ", "organism": "Mus_musculus", "source.ver": "src/contrib/EnsDb.Mmusculus.v79_2.99.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 69, "suggestsMe": [ "epivizrData" ] }, "EnsDb.Rnorvegicus.v75": { "Package": "EnsDb.Rnorvegicus.v75", "Version": "2.99.0", "Depends": [ "ensembldb" ], "License": "Artistic-2.0", "MD5sum": "40ff53b41aa6fad0d5bd15f9c6f3bad8", "NeedsCompilation": "no", "Title": "Ensembl based annotation package", "Description": "Exposes an annotation databases generated from Ensembl.", "biocViews": [ "AnnotationData", "EnsDb", "Rattus_norvegicus" ], "Author": "Johannes Rainer", "Maintainer": "Johannes Rainer ", "organism": "Rattus_norvegicus", "source.ver": "src/contrib/EnsDb.Rnorvegicus.v75_2.99.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 824 }, "EnsDb.Rnorvegicus.v79": { "Package": "EnsDb.Rnorvegicus.v79", "Version": "2.99.0", "Depends": [ "ensembldb" ], "License": "Artistic-2.0", "MD5sum": "7d305bd0d1a073bd8c60063ae210a7a9", "NeedsCompilation": "no", "Title": "Ensembl based annotation package", "Description": "Exposes an annotation databases generated from Ensembl.", "biocViews": [ "AnnotationData", "EnsDb", "Rattus_norvegicus" ], "Author": "Johannes Rainer", "Maintainer": "Johannes Rainer ", "organism": "Rattus_norvegicus", "source.ver": "src/contrib/EnsDb.Rnorvegicus.v79_2.99.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 291 }, "FDb.FANTOM4.promoters.hg19": { "Package": "FDb.FANTOM4.promoters.hg19", "Version": "1.0.0", "Depends": [ "GenomicFeatures (>= 1.7.22)", "Biostrings" ], "Imports": [ "GenomicFeatures", "AnnotationDbi" ], "Suggests": [ "BSgenome.Hsapiens.UCSC.hg19", "rtracklayer", "matrixStats" ], "License": "Artistic-2.0", "MD5sum": "99a610eb895470e3d945acc5cfb3ebe6", "NeedsCompilation": "no", "Title": "Annotation package for FANTOM4 promoters identified from THP-1 cells", "Description": "FANTOM4 promoters, liftOver'ed from hg18 to hg19, CpGs quantified", "biocViews": [ "AnnotationData", "Homo_sapiens" ], "Author": "Tim Triche, Jr.", "Maintainer": "Tim Triche, Jr. ", "organism": "Homo sapiens", "source.ver": "src/contrib/FDb.FANTOM4.promoters.hg19_1.0.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 591 }, "FDb.InfiniumMethylation.hg18": { "Package": "FDb.InfiniumMethylation.hg18", "Version": "2.2.0", "Depends": [ "R (>= 2.10)", "GenomicFeatures (>= 1.7.22)", "TxDb.Hsapiens.UCSC.hg18.knownGene", "org.Hs.eg.db" ], "Imports": [ "GenomicFeatures", "AnnotationDbi", "Biostrings" ], "License": "Artistic-2.0", "MD5sum": "95ceab50d0a7c3d417cee12fbe3defb3", "NeedsCompilation": "no", "Title": "Annotation package for Illumina Infinium DNA methylation probes", "Description": "Compiled HumanMethylation27 and HumanMethylation450 annotations", "biocViews": [ "AnnotationData", "DNAMethylation", "Homo_sapiens" ], "Author": "Tim Triche, Jr.", "Maintainer": "Tim Triche, Jr. ", "organism": "Homo sapiens", "source.ver": "src/contrib/FDb.InfiniumMethylation.hg18_2.2.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 191, "suggestsMe": [ "methylumi" ] }, "FDb.InfiniumMethylation.hg19": { "Package": "FDb.InfiniumMethylation.hg19", "Version": "2.2.0", "Depends": [ "R (>= 2.10)", "GenomicFeatures (>= 1.7.22)", "TxDb.Hsapiens.UCSC.hg19.knownGene", "org.Hs.eg.db" ], "Imports": [ "GenomicFeatures", "AnnotationDbi", "Biostrings" ], "Suggests": [ "FDb.UCSC.snp135common.hg19" ], "License": "Artistic-2.0", "MD5sum": "b8b1abc599b9556b9fe9c6e824cb2697", "NeedsCompilation": "no", "Title": "Annotation package for Illumina Infinium DNA methylation probes", "Description": "Compiled HumanMethylation27 and HumanMethylation450 annotations", "biocViews": [ "AnnotationData", "DNAMethylation", "Homo_sapiens" ], "Author": "Tim Triche, Jr.", "Maintainer": "Tim Triche, Jr. ", "organism": "Homo sapiens", "source.ver": "src/contrib/FDb.InfiniumMethylation.hg19_2.2.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 11, "suggestsMe": [ "methyAnalysis", "omicsPrint" ], "dependsOnMe": [ "methylumi" ] }, "FDb.UCSC.snp135common.hg19": { "Package": "FDb.UCSC.snp135common.hg19", "Version": "1.0.0", "Depends": [ "GenomicFeatures (>= 1.7.22)" ], "Imports": [ "GenomicFeatures", "AnnotationDbi" ], "Suggests": [ "BSgenome.Hsapiens.UCSC.hg19", "SNPlocs.Hsapiens.dbSNP.20111119" ], "License": "Artistic-2.0", "MD5sum": "0cdca5fa595bb69464016ceb97635f78", "NeedsCompilation": "no", "Title": "UCSC common SNPs track for dbSNP build 135", "Description": "makeFeatureDbFromUCSC cannot cope with this track, hence a package", "biocViews": [ "AnnotationData", "Homo_sapiens" ], "Author": "Tim Triche, Jr.", "Maintainer": "Tim Triche, Jr. ", "organism": "Homo sapiens", "source.ver": "src/contrib/FDb.UCSC.snp135common.hg19_1.0.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "suggestsMe": [ "FDb.InfiniumMethylation.hg19" ], "Rank": 396 }, "FDb.UCSC.snp137common.hg19": { "Package": "FDb.UCSC.snp137common.hg19", "Version": "1.0.0", "Depends": [ "GenomicFeatures (>= 1.7.22)" ], "Imports": [ "GenomicFeatures", "AnnotationDbi" ], "Suggests": [ "BSgenome.Hsapiens.UCSC.hg19" ], "License": "Artistic-2.0", "MD5sum": "dac83f2d2f9ea9f033e50beac5c44838", "NeedsCompilation": "no", "Title": "UCSC common SNPs track for dbSNP build 137", "Description": "makeFeatureDbFromUCSC cannot cope with this track, hence a package", "biocViews": [ "AnnotationData", "Homo_sapiens" ], "Author": "Tim Triche, Jr.", "Maintainer": "Tim Triche, Jr. ", "organism": "Homo sapiens", "source.ver": "src/contrib/FDb.UCSC.snp137common.hg19_1.0.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 396 }, "FDb.UCSC.tRNAs": { "Package": "FDb.UCSC.tRNAs", "Version": "1.0.1", "Depends": [ "GenomicFeatures (>= 1.9.39)" ], "Imports": [ "GenomicFeatures", "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "77bfdadd4d9f995a72b001e4e41792fa", "NeedsCompilation": "no", "Title": "Annotation package for FeatureDb object(s)", "Description": "Exposes an annotation databases generated from UCSC by exposing these as FeatureDb objects", "biocViews": [ "AnnotationData", "Genetics", "Homo_sapiens", "TxDb" ], "Author": "Marc Carlson", "Maintainer": "Biocore Data Team ", "organism": "Homo sapiens", "source.ver": "src/contrib/FDb.UCSC.tRNAs_1.0.1.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 162, "suggestsMe": [ "GenomicFeatures", "OrganismDbi" ] }, "fitCons.UCSC.hg19": { "Package": "fitCons.UCSC.hg19", "Version": "3.7.1", "Depends": [ "R (>= 3.0.0)", "GenomicScores (>= 1.3.19)" ], "Imports": [ "utils", "S4Vectors", "IRanges", "GenomicRanges", "GenomeInfoDb", "BSgenome" ], "License": "Artistic-2.0", "MD5sum": "53d954890ec9b91084664a10161ce391", "NeedsCompilation": "no", "Title": "UCSC fitCons fitness consequences scores for hg19", "Description": "Store UCSC fitCons fitness consequences scores version 1.01 for the human genome (hg19).", "biocViews": [ "AnnotationData", "Genetics", "GenomicScores", "Homo_sapiens" ], "Author": "Robert Castelo", "Maintainer": "Robert Castelo ", "source.ver": "src/contrib/fitCons.UCSC.hg19_3.7.1.tar.gz", "hasREADME": false, "hasNEWS": true, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "fly.db0": { "Package": "fly.db0", "Version": "3.6.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.41.4)" ], "Imports": [ "methods", "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "c1b709070fe7a4670ace42f2cda22171", "NeedsCompilation": "no", "Title": "Base Level Annotation databases for fly", "Description": "Base annotation databases for fly, intended ONLY to be used by AnnotationDbi to produce regular annotation packages.", "biocViews": [ "AnnotationData", "Drosophila_melanogaster", "db0" ], "Author": "Bioconductor Core Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Drosophila melanogaster", "source.ver": "src/contrib/fly.db0_3.6.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 779 }, "geneplast.data.string.v91": { "Package": "geneplast.data.string.v91", "Version": "0.99.6", "Depends": [ "R (>= 3.5)" ], "License": "Artistic-2.0", "MD5sum": "86433f8489d9228c5ed73e2b75a55398", "NeedsCompilation": "no", "Title": "Input data for the geneplast package", "Description": "The package geneplast.data.string.v91 contains input data used in the analysis pipelines available in the geneplast package.", "biocViews": [ "AnnotationData", "FunctionalAnnotation" ], "Author": "Sheyla Trefflich, Rodrigo Damolin, Mauro Castro.", "Maintainer": "Sheyla Trefflich , Mauro Castro ", "source.ver": "src/contrib/geneplast.data.string.v91_0.99.6.tar.gz", "hasREADME": false, "hasNEWS": true, "hasINSTALL": false, "hasLICENSE": false, "Rank": 910 }, "GenomeInfoDbData": { "Package": "GenomeInfoDbData", "Version": "1.1.0", "Depends": [ "R (>= 3.3)" ], "License": "Artistic-2.0", "MD5sum": "e7fe0694dc065ebe8a7474d9b7afca63", "NeedsCompilation": "no", "Title": "Species and taxonomy ID look up tables used by GenomeInfoDb", "Description": "Files for mapping between NCBI taxonomy ID and species. Used by functions in the GenomeInfoDb package.", "biocViews": [ "AnnotationData", "Organism" ], "Author": "Bioconductor Core Team", "Maintainer": "Bioconductor Maintainer ", "source.ver": "src/contrib/GenomeInfoDbData_1.1.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 1, "importsMe": [ "GenomeInfoDb" ] }, "genomewidesnp5Crlmm": { "Package": "genomewidesnp5Crlmm", "Version": "1.0.6", "Imports": [ "utils" ], "License": "Artistic-2.0", "MD5sum": "cc24140cd17758b8e09f4fe6c931526a", "NeedsCompilation": "no", "Title": "Metadata for fast genotyping with the 'crlmm' package", "Description": "Package with metadata for fast genotyping Affymetrix GenomeWideSnp_5 arrays using the 'crlmm' package. Annotation build is hg19.", "Author": "Benilton S Carvalho", "Maintainer": "Benilton S Carvalho , Robert Scharpf ", "source.ver": "src/contrib/genomewidesnp5Crlmm_1.0.6.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 221, "biocViews": [ "AnnotationData" ], "suggestsMe": [ "oligoClasses" ] }, "genomewidesnp6Crlmm": { "Package": "genomewidesnp6Crlmm", "Version": "1.0.7", "Imports": [ "utils" ], "License": "Artistic-2.0", "MD5sum": "13dd5aef3d814524896f2f3013beb78b", "NeedsCompilation": "no", "Title": "Metadata for fast genotyping with the 'crlmm' package", "Description": "Package with metadata for fast genotyping Affymetrix GenomeWideSnp_6 arrays using the 'crlmm' package.", "biocViews": [ "AnnotationData" ], "Author": "Benilton S Carvalho", "Maintainer": "Benilton S Carvalho , Robert Scharpf ", "source.ver": "src/contrib/genomewidesnp6Crlmm_1.0.7.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 158, "suggestsMe": [ "crlmm", "oligoClasses" ] }, "GGHumanMethCancerPanelv1.db": { "Package": "GGHumanMethCancerPanelv1.db", "Version": "1.4.1", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.11.9)", "org.Hs.eg.db (>= 2.4.5)" ], "Imports": [ "methods", "AnnotationDbi", "AnnotationForge" ], "Suggests": [ "annotate" ], "License": "Artistic-2.0", "MD5sum": "e8f4a37182b175fb33dd54f8093e6f52", "NeedsCompilation": "no", "Title": "Illumina Golden Gate Human Methylation Cancer Panel Version 1 annotation data (chip GGHumanMethCancerPanelv1)", "Description": "Illumina Golden Gate Human Methylation Cancer Panel Version 1 annotation data (chip GGHumanMethCancerPanelv1) assembled using data from public repositories", "biocViews": [ "AnnotationData", "GGHumanMethCancerPanelv1", "Homo_sapiens", "IlluminaChip" ], "Author": "Sean Davis ", "Maintainer": "Sean Davis ", "organism": "Homo sapiens", "manufacturer": "Illumina", "source.ver": "src/contrib/GGHumanMethCancerPanelv1.db_1.4.1.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 529 }, "GO.db": { "Package": "GO.db", "Version": "3.6.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.41.4)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI" ], "License": "Artistic-2.0", "MD5sum": "5ae3316dcda13d46c8cdfd18cf29dfcc", "NeedsCompilation": "no", "Title": "A set of annotation maps describing the entire Gene Ontology", "Description": "A set of annotation maps describing the entire Gene Ontology assembled using data from GO", "biocViews": [ "AnnotationData", "FunctionalAnnotation" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/GO.db_3.6.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "dependsOnMe": [ "annaffy", "davidTiling", "ExpressionView", "geneXtendeR", "GOFunction", "goProfiles", "GOSim", "goTools", "Homo.sapiens", "Mus.musculus", "PGSEA", "Rattus.norvegicus", "RnaSeqGeneEdgeRQL", "ScISI", "SemDist", "topGO" ], "Rank": 2, "suggestsMe": [ "annotate", "AnnotationDbi", "AnnotationForge", "AnnotationFuncs", "BiocCaseStudies", "Category", "categoryCompare", "chipenrich.data", "eisa", "erma", "FGNet", "gage", "gCMAP", "geecc", "GeneAnswers", "GlobalAncova", "globaltest", "GSEABase", "hpar", "HTSanalyzeR", "interactiveDisplay", "InterMineR", "limma", "mgsa", "MLP", "oppar", "pcaGoPromoter", "PCpheno", "phenoTest", "pRoloc", "RforProteomics", "rols", "RTopper", "safe", "scde", "SLGI", "TFutils", "yeastExpData" ], "importsMe": [ "adSplit", "ChIPpeakAnno", "clusterProfiler", "CNEr", "compEpiTools", "dSimer", "EnrichmentBrowser", "ExpressionView", "facopy", "GOFunction", "GOpro", "GOSemSim", "goseq", "goSTAG", "GOstats", "goTools", "ideal", "ldblock", "MCbiclust", "mdgsa", "MIGSA", "missMethyl", "PathwaySplice", "pcaExplorer", "PCpheno", "Pigengene", "psygenet2r", "RDAVIDWebService", "restfulSE", "rgsepd", "ScISI", "SLGI", "systemPipeR" ] }, "gp53cdf": { "Package": "gp53cdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "2887dd15d3fa29b5c13b068c8d641f61", "NeedsCompilation": "no", "Title": "gp53cdf", "Description": "A package containing an environment representing the GP53.CDF file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "gp53" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/gp53cdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "grasp2db": { "Package": "grasp2db", "Version": "1.1.0", "Depends": [ "RSQLite", "dplyr", "dbplyr" ], "Imports": [ "methods", "utils", "stats", "GenomeInfoDb", "AnnotationHub", "digest" ], "Suggests": [ "gwascat", "knitr" ], "Enhances": [ "AnnotationHubData" ], "License": "Artistic-2.0 + file LICENSE", "MD5sum": "3fc90fc7c99e7da51dcbb687fd2d5515", "NeedsCompilation": "no", "Title": "grasp2db, sqlite wrap of GRASP 2.0", "Description": "grasp2db, sqlite wrap of NHLBI GRASP 2.0, an extended GWAS catalog.", "Author": "VJ Carey ", "Maintainer": "VJ Carey ", "VignetteBuilder": "knitr", "source.ver": "src/contrib/grasp2db_1.1.0.tar.gz", "vignettes": [ "vignettes/grasp2db/inst/doc/grasp2db.pdf", "vignettes/grasp2db/inst/doc/BiocGRASP2.html" ], "vignetteTitles": [ "grasp2db: interface to a high density GWAS catalogue", "Notes on Bioconductor's GRASP2 database curation" ], "hasREADME": true, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": true, "Rfiles": [ "vignettes/grasp2db/inst/doc/BiocGRASP2.R", "vignettes/grasp2db/inst/doc/grasp2db.R" ], "Rank": 278, "biocViews": [ "AnnotationData" ], "suggestsMe": [ "AnnotationHubData" ] }, "greengenes13.5MgDb": { "Package": "greengenes13.5MgDb", "Version": "2.0.0", "Depends": [ "R (>= 3.4.0)", "methods" ], "Imports": [ "metagenomeFeatures (>= 1.9.9)" ], "License": "Artistic-2.0", "MD5sum": "c06d8d5b702636bb5fb3e6229869578c", "NeedsCompilation": "no", "Title": "Greengenes 13.5 16S rRNA Database Annotation Data", "Description": "Metagenome annotation package with for the Greengenes 16S rRNA Database version 13.5. Contains a MgDb-class object, defined in the metagenomeFeatures package.", "biocViews": [ "AnnotationData", "Microbiome" ], "Author": "Nathan D. Olson , Joseph Nathaniel Paulson, Hector Corrada-Bravo", "Maintainer": "Nathan D. Olson ", "URL": "https://github.com/HCBravoLab/greengenes13.5MgDb", "BugReports": "https://github.com/HCBravoLab/greengenes13.5MgDb/issues", "source.ver": "src/contrib/greengenes13.5MgDb_2.0.0.tar.gz", "hasREADME": false, "hasNEWS": true, "hasINSTALL": false, "hasLICENSE": false, "Rank": 875 }, "h10kcod.db": { "Package": "h10kcod.db", "Version": "3.4.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.31.18)", "org.Hs.eg.db (>= 3.2.1)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "a555739cea229f286953c3297c145e9c", "NeedsCompilation": "no", "Title": "Codelink UniSet Human I Bioarray (~10 000 human genes) annotation data (chip h10kcod)", "Description": "Codelink UniSet Human I Bioarray (~10 000 human genes) annotation data (chip h10kcod) assembled using data from public repositories", "biocViews": [ "AnnotationData", "ChipDb", "CodelinkChip", "Homo_sapiens", "h10kcod" ], "Author": "Diego Diez", "Maintainer": "Diego Diez ", "organism": "Homo sapiens", "manufacturer": "Codelink", "source.ver": "src/contrib/h10kcod.db_3.4.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "h20kcod.db": { "Package": "h20kcod.db", "Version": "3.4.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.31.18)", "org.Hs.eg.db (>= 3.2.1)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "3647facb272f58424f4c94ef92e8ee45", "NeedsCompilation": "no", "Title": "Codelink UniSet Human 20k I Bioarray annotation data (chip h20kcod)", "Description": "Codelink UniSet Human 20k I Bioarray annotation data (chip h20kcod) assembled using data from public repositories", "biocViews": [ "AnnotationData", "ChipDb", "CodelinkChip", "Homo_sapiens", "h20kcod" ], "Author": "Diego Diez", "Maintainer": "Diego Diez ", "organism": "Homo sapiens", "manufacturer": "Codelink", "source.ver": "src/contrib/h20kcod.db_3.4.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 396 }, "hapmap370k": { "Package": "hapmap370k", "Version": "1.0.1", "Suggests": [ "crlmm" ], "License": "GPL", "MD5sum": "569556341a45da799372aaf1012be72e", "NeedsCompilation": "no", "Title": "Example Illumina 370k HapMap Data", "Description": "Example HapMap data from Illumina 370k BeadChips", "biocViews": [ "AnnotationData", "ExperimentData" ], "Author": "Matthew Ritchie ", "Maintainer": "Matthew Ritchie ", "source.ver": "src/contrib/hapmap370k_1.0.1.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "hcg110.db": { "Package": "hcg110.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Hs.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "eaba09d7e88bb913fd18f4e8fb72760b", "NeedsCompilation": "no", "Title": "Affymetrix Human Cancer G110 Array annotation data (chip hcg110)", "Description": "Affymetrix Human Cancer G110 Array annotation data (chip hcg110) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Homo_sapiens", "hcg110" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Homo sapiens", "manufacturer": "Affymetrix", "source.ver": "src/contrib/hcg110.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 591 }, "hcg110cdf": { "Package": "hcg110cdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "b53167876217ddb301204719da23eafc", "NeedsCompilation": "no", "Title": "hcg110cdf", "Description": "A package containing an environment representing the HC_G110.cdf file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "hcg110" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/hcg110cdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 726 }, "hcg110probe": { "Package": "hcg110probe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "51af8d6a7090ea7c5fe630dcea68bfb3", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type hcg110", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HC-G110\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "hcg110", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/hcg110probe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 824 }, "hgfocus.db": { "Package": "hgfocus.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Hs.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "7fb2bb82975ff21d075d3c8ce6f8162a", "NeedsCompilation": "no", "Title": "Affymetrix Human Genome Focus Array annotation data (chip hgfocus)", "Description": "Affymetrix Human Genome Focus Array annotation data (chip hgfocus) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Homo_sapiens", "hgfocus" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Homo sapiens", "manufacturer": "Affymetrix", "source.ver": "src/contrib/hgfocus.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 136, "suggestsMe": [ "gCMAPWeb" ], "dependsOnMe": [ "cheung2010" ] }, "hgfocuscdf": { "Package": "hgfocuscdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "9883e53bfd9ddb9ad5f3a9c2e47bbd2c", "NeedsCompilation": "no", "Title": "hgfocuscdf", "Description": "A package containing an environment representing the HG-Focus.CDF file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "hgfocus" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/hgfocuscdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 179, "suggestsMe": [ "affycoretools", "arrays" ] }, "hgfocusprobe": { "Package": "hgfocusprobe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "0a399ed276b89e3d80946b6cbbf167b4", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type hgfocus", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG-Focus\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "hgfocus", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/hgfocusprobe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 278, "suggestsMe": [ "affyILM" ] }, "hgu133a.db": { "Package": "hgu133a.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Hs.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "ce0397160fe78a92671e492a22542a79", "NeedsCompilation": "no", "Title": "Affymetrix Human Genome U133 Set annotation data (chip hgu133a)", "Description": "Affymetrix Human Genome U133 Set annotation data (chip hgu133a) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Homo_sapiens", "hgu133a" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Homo sapiens", "manufacturer": "Affymetrix", "source.ver": "src/contrib/hgu133a.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 17, "suggestsMe": [ "AIMS", "altcdfenvs", "BiocCaseStudies", "gage", "gCMAPWeb", "geneplotter", "goTools", "MGFM", "MineICA", "safe", "sampleClassifier", "sigPathway", "topGO" ], "dependsOnMe": [ "KEGGlincs", "Neve2006" ], "importsMe": [ "DrugVsDisease", "PADOG", "phenoTest" ] }, "hgu133a2.db": { "Package": "hgu133a2.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Hs.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "15cad9bc3f5ef6fca5300638a9c8bb86", "NeedsCompilation": "no", "Title": "Affymetrix Human Genome U133A 2.0 Array annotation data (chip hgu133a2)", "Description": "Affymetrix Human Genome U133A 2.0 Array annotation data (chip hgu133a2) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Homo_sapiens", "hgu133a2" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Homo sapiens", "manufacturer": "Affymetrix", "source.ver": "src/contrib/hgu133a2.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 52, "suggestsMe": [ "RUVcorr" ], "importsMe": [ "DrugVsDisease" ] }, "hgu133a2cdf": { "Package": "hgu133a2cdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "566bc70f0bb94a376bf88f191a2f067e", "NeedsCompilation": "no", "Title": "hgu133a2cdf", "Description": "A package containing an environment representing the HG-U133A_2.cdf file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "hgu133a2" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/hgu133a2cdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 88 }, "hgu133a2frmavecs": { "Package": "hgu133a2frmavecs", "Version": "1.2.0", "Depends": [ "R (>= 2.10.0)" ], "License": "GPL (>= 2)", "MD5sum": "4bf8cf5cbaf288ce0a9618d764c87044", "NeedsCompilation": "no", "Title": "Vectors used by frma for microarrays of type hgu133a2", "Description": "This package was created by frmaTools version 1.19.3 and hgu133ahsentrezgcdf version 19.0.0.", "biocViews": [ "AffymetrixChip", "AnnotationData", "FRMA", "Homo_sapiens", "hgu133a2" ], "Author": "Matthew N. McCall , Rafael A. Irizarry ", "Maintainer": "Matthew N. McCall ", "source.ver": "src/contrib/hgu133a2frmavecs_1.2.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 337 }, "hgu133a2probe": { "Package": "hgu133a2probe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "736b43cfc37a297ccc0d30cb75fcc95a", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type hgu133a2", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG-U133A\\_2\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "hgu133a2", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/hgu133a2probe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 171 }, "hgu133acdf": { "Package": "hgu133acdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "d3e0e22b2d3943d26c94e7c01b91035c", "NeedsCompilation": "no", "Title": "hgu133acdf", "Description": "A package containing an environment representing the HG-U133A.cdf file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "hgu133a" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/hgu133acdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 28, "suggestsMe": [ "affydata", "altcdfenvs", "AmpAffyExample", "frmaTools" ] }, "hgu133afrmavecs": { "Package": "hgu133afrmavecs", "Version": "1.5.0", "Depends": [ "R (>= 2.10.0)" ], "License": "GPL (>= 2)", "MD5sum": "85034ab02491f5b3699d210cef50812d", "NeedsCompilation": "no", "Title": "Vectors used by frma for microarrays of type hgu133a", "Description": "This package was created by frmaTools version 1.19.3 and hgu133ahsentrezgcdf version 19.0.0.", "biocViews": [ "AffymetrixChip", "AnnotationData", "FRMA", "Homo_sapiens", "hgu133a" ], "Author": "Matthew N. McCall , Rafael A. Irizarry ", "Maintainer": "Matthew N. McCall ", "source.ver": "src/contrib/hgu133afrmavecs_1.5.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 183, "suggestsMe": [ "frma", "frmaTools" ] }, "hgu133aprobe": { "Package": "hgu133aprobe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "76cd9c54b0a8a0240dbb0fc758959d62", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type hgu133a", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG-U133A\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "hgu133a", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/hgu133aprobe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 83, "suggestsMe": [ "altcdfenvs", "Biostrings", "frmaTools" ] }, "hgu133atagcdf": { "Package": "hgu133atagcdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "01f8809e0deb5b83f3f0decec881a1d8", "NeedsCompilation": "no", "Title": "hgu133atagcdf", "Description": "A package containing an environment representing the HG-U133A_tag.CDF file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "hgu133atag" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/hgu133atagcdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 211, "suggestsMe": [ "arrayMvout", "frmaTools" ] }, "hgu133atagprobe": { "Package": "hgu133atagprobe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "97aeaf9ac9450369cf030581b8ec5a53", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type hgu133atag", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG-U133A\\_tag\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "hgu133atag", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/hgu133atagprobe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 306, "suggestsMe": [ "frmaTools" ] }, "hgu133b.db": { "Package": "hgu133b.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Hs.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "3e7c3fa57703d21d4a7624a45d921b24", "NeedsCompilation": "no", "Title": "Affymetrix Human Genome U133 Set annotation data (chip hgu133b)", "Description": "Affymetrix Human Genome U133 Set annotation data (chip hgu133b) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Homo_sapiens", "hgu133b" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Homo sapiens", "manufacturer": "Affymetrix", "source.ver": "src/contrib/hgu133b.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 93 }, "hgu133bcdf": { "Package": "hgu133bcdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "649aaa5e6275be6ee4d24d80ca390ea5", "NeedsCompilation": "no", "Title": "hgu133bcdf", "Description": "A package containing an environment representing the HG-U133B.cdf file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "hgu133b" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/hgu133bcdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 118 }, "hgu133bprobe": { "Package": "hgu133bprobe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "203750510e51450e1267e08c241151c4", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type hgu133b", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG-U133B\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "hgu133b", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/hgu133bprobe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 306 }, "hgu133plus2.db": { "Package": "hgu133plus2.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Hs.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "45a376b6092da75907b9e73bbd90e5bf", "NeedsCompilation": "no", "Title": "Affymetrix Human Genome U133 Plus 2.0 Array annotation data (chip hgu133plus2)", "Description": "Affymetrix Human Genome U133 Plus 2.0 Array annotation data (chip hgu133plus2) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Homo_sapiens", "hgu133plus2" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Homo sapiens", "manufacturer": "Affymetrix", "source.ver": "src/contrib/hgu133plus2.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 9, "suggestsMe": [ "BioQC", "epivizr", "epivizrChart", "epivizrData", "geecc", "graphite", "KEGGgraph", "mAPKL", "pcaGoPromoter", "PREDAsampledata", "rheumaticConditionWOLLBOLD", "rtracklayer", "sampleClassifier", "SPIA" ], "dependsOnMe": [ "humanStemCell", "maPredictDSC" ], "importsMe": [ "DeSousa2013", "DrugVsDisease", "PADOG" ] }, "hgu133plus2cdf": { "Package": "hgu133plus2cdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "284fef2f0b777d7b53451538ddd53de3", "NeedsCompilation": "no", "Title": "hgu133plus2cdf", "Description": "A package containing an environment representing the HG-U133_Plus_2.cdf file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "hgu133plus2" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/hgu133plus2cdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 12, "suggestsMe": [ "ELBOW", "frmaTools", "prebs", "PREDAsampledata", "qcmetrics" ] }, "hgu133plus2frmavecs": { "Package": "hgu133plus2frmavecs", "Version": "1.5.0", "Depends": [ "R (>= 2.10.0)" ], "License": "GPL (>= 2)", "MD5sum": "a4781cbcccc1ee17dfd16259f1c7bebc", "NeedsCompilation": "no", "Title": "Vectors used by frma for microarrays of type hgu133plus2", "Description": "This package was created by frmaTools version 1.19.3 and hgu133ahsentrezgcdf version 19.0.0.", "biocViews": [ "AffymetrixChip", "AnnotationData", "FRMA", "Homo_sapiens", "hgu133plus2" ], "Author": "Matthew N. McCall , Rafael A. Irizarry ", "Maintainer": "Matthew N. McCall ", "source.ver": "src/contrib/hgu133plus2frmavecs_1.5.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 148, "importsMe": [ "DeSousa2013" ] }, "hgu133plus2probe": { "Package": "hgu133plus2probe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "7a244787a0269bc72732ac3d830f34dd", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type hgu133plus2", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG-U133\\_Plus\\_2\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "hgu133plus2", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/hgu133plus2probe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 39, "suggestsMe": [ "ELBOW", "frmaTools", "prebs" ] }, "hgu219.db": { "Package": "hgu219.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Hs.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "a4a0fd2ac170a75d8b17618615fcd7a0", "NeedsCompilation": "no", "Title": "Affymetrix Human Genome 219 Plate annotation data (chip hgu219)", "Description": "Affymetrix Human Genome 219 Plate annotation data (chip hgu219) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Homo_sapiens", "hgu219" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Homo sapiens", "manufacturer": "Affymetrix", "source.ver": "src/contrib/hgu219.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 131 }, "hgu219cdf": { "Package": "hgu219cdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "157a4280a9de960902260ab18f678949", "NeedsCompilation": "no", "Title": "hgu219cdf", "Description": "A package containing an environment representing the HG-U219.cdf file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "hgu219" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/hgu219cdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 171 }, "hgu219probe": { "Package": "hgu219probe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "c5bb2f7b2e0f8fa89e6a30befaee6497", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type hgu219", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG-U219\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "hgu219", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/hgu219probe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 337 }, "hgu95a.db": { "Package": "hgu95a.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Hs.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "e509dd32292601d81af8aa61ec782ca7", "NeedsCompilation": "no", "Title": "Affymetrix Human Genome U95 Set annotation data (chip hgu95a)", "Description": "Affymetrix Human Genome U95 Set annotation data (chip hgu95a) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Homo_sapiens", "hgu95a" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Homo sapiens", "manufacturer": "Affymetrix", "source.ver": "src/contrib/hgu95a.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 58, "dependsOnMe": [ "GSVAdata" ] }, "hgu95acdf": { "Package": "hgu95acdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "afc999d77b1532154d45911ad15a5897", "NeedsCompilation": "no", "Title": "hgu95acdf", "Description": "A package containing an environment representing the HG_U95A.CDF file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "hgu95a" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/hgu95acdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 90, "suggestsMe": [ "altcdfenvs" ] }, "hgu95aprobe": { "Package": "hgu95aprobe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "67d94ecdc1889acc19dafd19d26700a2", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type hgu95a", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG\\_U95A\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "hgu95a", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/hgu95aprobe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 291 }, "hgu95av2": { "Package": "hgu95av2", "Version": "2.2.0", "Depends": [ "R (>= 2.4.0)" ], "License": "The Artistic License, Version 2.0", "MD5sum": "b92585c0f43e91bd1abd234b9465a6a7", "NeedsCompilation": "no", "Title": "Affymetrix Human Genome U95 Set Annotation Data (hgu95av2)", "Description": "Affymetrix Human Genome U95 Set annotation data (hgu95av2) assembled using data from public data repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "hgu95av2" ], "Author": "Ting-Yuan Liu, ChenWei Lin, Seth Falcon, Jianhua Zhang, James W. MacDonald", "Maintainer": "Biocore Data Team ", "organism": "Homo sapiens", "manufacturer": "Affymetrix", "source.ver": "src/contrib/hgu95av2_2.2.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 81, "suggestsMe": [ "AffyExpress", "estrogen", "paxtoolsr", "tkWidgets" ] }, "hgu95av2.db": { "Package": "hgu95av2.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Hs.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "a0ee1ba7f115a1504ca89619a0bc56dd", "NeedsCompilation": "no", "Title": "Affymetrix Human Genome U95 Set annotation data (chip hgu95av2)", "Description": "Affymetrix Human Genome U95 Set annotation data (chip hgu95av2) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Homo_sapiens", "hgu95av2" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Homo sapiens", "manufacturer": "Affymetrix", "source.ver": "src/contrib/hgu95av2.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 10, "suggestsMe": [ "a4Preproc", "affycoretools", "annaffy", "annotate", "AnnotationDbi", "AnnotationForge", "BiocCaseStudies", "biocGraph", "BioNet", "Category", "categoryCompare", "ChromHeatMap", "clipper", "eisa", "EnrichmentBrowser", "esetVis", "ExpressionView", "genefilter", "geneplotter", "GenomicRanges", "GOstats", "graphite", "GSAR", "GSEABase", "GSEAlm", "GSRI", "Heatplus", "idiogram", "interactiveDisplay", "macat", "mdgsa", "MLInterfaces", "npGSEA", "pathRender", "PGSEA", "ReportingTools", "RGalaxy", "SNAGEE", "SNAGEEdata", "SummarizedExperiment", "topGO" ], "dependsOnMe": [ "keggorthology" ] }, "hgu95av2cdf": { "Package": "hgu95av2cdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "026bae2f76433593f75ca6c79bc9a9d0", "NeedsCompilation": "no", "Title": "hgu95av2cdf", "Description": "A package containing an environment representing the HG_U95Av2.CDF file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "hgu95av2" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/hgu95av2cdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 29, "suggestsMe": [ "affyContam", "affydata", "AffyExpress", "bgx", "BiocCaseStudies", "Biostrings", "estrogen", "gcrma", "maskBAD", "mimager", "paxtoolsr", "vsn" ] }, "hgu95av2probe": { "Package": "hgu95av2probe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "d3efb56f7e7a264b633fac787a5a2b95", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type hgu95av2", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG\\_U95Av2\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "hgu95av2", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/hgu95av2probe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 63, "suggestsMe": [ "affypdnn", "BiocCaseStudies", "Biostrings", "BSgenome", "gcrma", "GenomicRanges", "maskBAD" ] }, "hgu95b.db": { "Package": "hgu95b.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Hs.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "c532e54fd7087f1b1cce0c1e61ae1c16", "NeedsCompilation": "no", "Title": "Affymetrix Human Genome U95 Set annotation data (chip hgu95b)", "Description": "Affymetrix Human Genome U95 Set annotation data (chip hgu95b) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Homo_sapiens", "hgu95b" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Homo sapiens", "manufacturer": "Affymetrix", "source.ver": "src/contrib/hgu95b.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 319 }, "hgu95bcdf": { "Package": "hgu95bcdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "e6e56b7a107bb2df25b3c25a8191385d", "NeedsCompilation": "no", "Title": "hgu95bcdf", "Description": "A package containing an environment representing the HG_U95B.CDF file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "hgu95b" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/hgu95bcdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 337 }, "hgu95bprobe": { "Package": "hgu95bprobe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "60dcb57fd402dc24d53ef9390c893cfc", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type hgu95b", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG-U95B\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "hgu95b", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/hgu95bprobe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 529 }, "hgu95c.db": { "Package": "hgu95c.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Hs.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "273595199acfafe4c50182916c9893ca", "NeedsCompilation": "no", "Title": "Affymetrix Human Genome U95 Set annotation data (chip hgu95c)", "Description": "Affymetrix Human Genome U95 Set annotation data (chip hgu95c) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Homo_sapiens", "hgu95c" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Homo sapiens", "manufacturer": "Affymetrix", "source.ver": "src/contrib/hgu95c.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 337 }, "hgu95ccdf": { "Package": "hgu95ccdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "976151eac05c320aec7a24397a6b5806", "NeedsCompilation": "no", "Title": "hgu95ccdf", "Description": "A package containing an environment representing the HG_U95C.CDF file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "hgu95c" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/hgu95ccdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 359 }, "hgu95cprobe": { "Package": "hgu95cprobe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "3fe935a52c70105dc7a214174c946455", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type hgu95c", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG-U95C\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "hgu95c", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/hgu95cprobe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 529 }, "hgu95d.db": { "Package": "hgu95d.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Hs.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "e56da8022bb88c1cd495ea516eae6613", "NeedsCompilation": "no", "Title": "Affymetrix Human Genome U95 Set annotation data (chip hgu95d)", "Description": "Affymetrix Human Genome U95 Set annotation data (chip hgu95d) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Homo_sapiens", "hgu95d" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Homo sapiens", "manufacturer": "Affymetrix", "source.ver": "src/contrib/hgu95d.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 359 }, "hgu95dcdf": { "Package": "hgu95dcdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "36e11ff001b1bec3f34ba7c93132ad6f", "NeedsCompilation": "no", "Title": "hgu95dcdf", "Description": "A package containing an environment representing the HG_U95D.CDF file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "hgu95d" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/hgu95dcdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 396 }, "hgu95dprobe": { "Package": "hgu95dprobe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "165ce5029f49fc515b9ee0e6a6a29cb5", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type hgu95d", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG-U95D\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "hgu95d", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/hgu95dprobe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 591 }, "hgu95e.db": { "Package": "hgu95e.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Hs.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "18bbf38f91172616a7f78e63e85630e5", "NeedsCompilation": "no", "Title": "Affymetrix Human Genome U95 Set annotation data (chip hgu95e)", "Description": "Affymetrix Human Genome U95 Set annotation data (chip hgu95e) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Homo_sapiens", "hgu95e" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Homo sapiens", "manufacturer": "Affymetrix", "source.ver": "src/contrib/hgu95e.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 396 }, "hgu95ecdf": { "Package": "hgu95ecdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "fa27cfff62a38fc51640d797bd628105", "NeedsCompilation": "no", "Title": "hgu95ecdf", "Description": "A package containing an environment representing the HG_U95E.CDF file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "hgu95e" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/hgu95ecdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 529 }, "hgu95eprobe": { "Package": "hgu95eprobe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "9e5407ab80c5bbb4065484be0b9c6191", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type hgu95e", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG-U95E\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "hgu95e", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/hgu95eprobe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 529 }, "hguatlas13k.db": { "Package": "hguatlas13k.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Hs.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "ab9ffe1a1de44c0f938129f193e7fb63", "NeedsCompilation": "no", "Title": "Clontech BD Atlas Long Oligos Human 13K annotation data (chip hguatlas13k)", "Description": "Clontech BD Atlas Long Oligos Human 13K annotation data (chip hguatlas13k) assembled using data from public repositories", "biocViews": [ "AnnotationData", "ChipDb", "ClontechChip", "Homo_sapiens", "hguatlas13k" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Homo sapiens", "manufacturer": "Clontech", "source.ver": "src/contrib/hguatlas13k.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "hgubeta7.db": { "Package": "hgubeta7.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Hs.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "1b8b065f95d2089985f59f22dcabc824", "NeedsCompilation": "no", "Title": "Unknown annotation data (chip hgubeta7)", "Description": "Unknown annotation data (chip hgubeta7) assembled using data from public repositories", "biocViews": [ "AnnotationData", "ChipDb", "CustomArray", "Homo_sapiens" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Homo sapiens", "manufacturer": "Unknown", "source.ver": "src/contrib/hgubeta7.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "hguDKFZ31.db": { "Package": "hguDKFZ31.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Hs.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "fa3ba493cebdac4253dea8fe5d58452b", "NeedsCompilation": "no", "Title": "Unknown annotation data (chip hguDKFZ31)", "Description": "Unknown annotation data (chip hguDKFZ31) assembled using data from public repositories", "biocViews": [ "AnnotationData", "ChipDb", "CustomArray", "Homo_sapiens" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Homo sapiens", "manufacturer": "Unknown", "source.ver": "src/contrib/hguDKFZ31.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "hgug4100a.db": { "Package": "hgug4100a.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Hs.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "b7856928278a77d71f963410ea4f2376", "NeedsCompilation": "no", "Title": "Agilent Human 1 cDNA Microarray Kit annotation data (chip hgug4100a)", "Description": "Agilent Human 1 cDNA Microarray Kit annotation data (chip hgug4100a) assembled using data from public repositories", "biocViews": [ "AgilentChip", "AnnotationData", "ChipDb", "Homo_sapiens", "hgug4100a" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Homo sapiens", "manufacturer": "Agilent", "source.ver": "src/contrib/hgug4100a.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 396 }, "hgug4101a.db": { "Package": "hgug4101a.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Hs.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "e4731217efbffd05d3ee7eec68ce0aa0", "NeedsCompilation": "no", "Title": "Agilent Human 2 cDNA Microarry Kit annotation data (chip hgug4101a)", "Description": "Agilent Human 2 cDNA Microarry Kit annotation data (chip hgug4101a) assembled using data from public repositories", "biocViews": [ "AgilentChip", "AnnotationData", "ChipDb", "Homo_sapiens", "hgug4101a" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Homo sapiens", "manufacturer": "Agilent", "source.ver": "src/contrib/hgug4101a.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 529 }, "hgug4110b.db": { "Package": "hgug4110b.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Hs.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "a9edcdbc121f22d4dec335a64598ff0e", "NeedsCompilation": "no", "Title": "Agilent Human 1A (V2) annotation data (chip hgug4110b)", "Description": "Agilent Human 1A (V2) annotation data (chip hgug4110b) assembled using data from public repositories", "biocViews": [ "AgilentChip", "AnnotationData", "ChipDb", "Homo_sapiens", "hgug4110b" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Homo sapiens", "manufacturer": "Agilent", "source.ver": "src/contrib/hgug4110b.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 319 }, "hgug4111a.db": { "Package": "hgug4111a.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Hs.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "a5f2c3b463915fa1ab0ca21e6b0f5840", "NeedsCompilation": "no", "Title": "Agilent Human 1B annotation data (chip hgug4111a)", "Description": "Agilent Human 1B annotation data (chip hgug4111a) assembled using data from public repositories", "biocViews": [ "AgilentChip", "AnnotationData", "ChipDb", "Homo_sapiens", "hgug4111a" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Homo sapiens", "manufacturer": "Agilent", "source.ver": "src/contrib/hgug4111a.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 359 }, "hgug4112a.db": { "Package": "hgug4112a.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Hs.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "67ecf8c887e2ebe1941cc51d0f5fb468", "NeedsCompilation": "no", "Title": "Agilent \"Human Genome, Whole\" annotation data (chip hgug4112a)", "Description": "Agilent \"Human Genome, Whole\" annotation data (chip hgug4112a) assembled using data from public repositories", "biocViews": [ "AgilentChip", "AnnotationData", "ChipDb", "Homo_sapiens", "hgug4112a" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Homo sapiens", "manufacturer": "Agilent", "source.ver": "src/contrib/hgug4112a.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "suggestsMe": [ "RmiR", "RmiR.Hs.miRNA", "RmiR.hsa" ], "Rank": 72 }, "hgug4845a.db": { "Package": "hgug4845a.db", "Version": "0.0.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.17.27)", "org.Hs.eg.db (>= 2.7.1)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "annotate" ], "License": "Artistic-2.0", "MD5sum": "46133d7bcb6d8c24c026304e8ddd150d", "NeedsCompilation": "no", "Title": "agilent AMADID 026652 annotation data (chip hgug4845a)", "Description": "agilent AMADID 026652 annotation data (chip hgug4845a) assembled using data from public repositories", "biocViews": [ "AnnotationData", "Homo_sapiens", "agilentChip", "hgug4845a" ], "Author": "Ralph Scherer", "Maintainer": "Ralph Scherer ", "organism": "Homo sapiens", "manufacturer": "agilent", "source.ver": "src/contrib/hgug4845a.db_0.0.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 591 }, "hguqiagenv3.db": { "Package": "hguqiagenv3.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Hs.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "91ebb82e773ff799befdb8921b38e90e", "NeedsCompilation": "no", "Title": "Qiagen Qiagen V3.0 oligo set annotation data (chip hguqiagenv3)", "Description": "Qiagen Qiagen V3.0 oligo set annotation data (chip hguqiagenv3) assembled using data from public repositories", "biocViews": [ "AnnotationData", "ChipDb", "Homo_sapiens", "QiagenChip", "hguqiagenv3" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Homo sapiens", "manufacturer": "Qiagen", "source.ver": "src/contrib/hguqiagenv3.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 726 }, "hi16cod.db": { "Package": "hi16cod.db", "Version": "3.4.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.31.18)", "org.Hs.eg.db (>= 3.2.1)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "abdc77937e8d37fa5468691376ceb6a5", "NeedsCompilation": "no", "Title": "Codelink Human Inflammation 16 Bioarray annotation data (chip hi16cod)", "Description": "Codelink Human Inflammation 16 Bioarray annotation data (chip hi16cod) assembled using data from public repositories", "biocViews": [ "AnnotationData", "ChipDb", "CodelinkChip", "Homo_sapiens", "hi16cod" ], "Author": "Diego Diez", "Maintainer": "Diego Diez ", "organism": "Homo sapiens", "manufacturer": "Codelink", "source.ver": "src/contrib/hi16cod.db_3.4.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 824 }, "hivprtplus2cdf": { "Package": "hivprtplus2cdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "143d9c2f5f328786bae7bb8dc4daf261", "NeedsCompilation": "no", "Title": "hivprtplus2cdf", "Description": "A package containing an environment representing the HIV PRTPlus 2.CDF file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "hivprtplus2" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/hivprtplus2cdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "hom.At.inp.db": { "Package": "hom.At.inp.db", "Version": "3.1.2", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.29.20)" ], "Imports": [ "methods", "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "9d96d343202848e129b96e5e234bd269", "NeedsCompilation": "no", "Title": "Homology information for Arabidopsis thaliana from Inparanoid", "Description": "Homology information for Arabidopsis thaliana from Inparanoid assembled using data from public repositories", "biocViews": [ "AnnotationData", "Arabidopsis_thaliana", "InparanoidDb" ], "Author": "Marc Carlson, Herve Pages", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Arabidopsis thaliana", "source.ver": "src/contrib/hom.At.inp.db_3.1.2.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 779 }, "hom.Ce.inp.db": { "Package": "hom.Ce.inp.db", "Version": "3.1.2", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.29.20)" ], "Imports": [ "methods", "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "914b04390edfc06466fddd3bab1a5806", "NeedsCompilation": "no", "Title": "Homology information for Caenorhabditis elegans from Inparanoid", "Description": "Homology information for Caenorhabditis elegans from Inparanoid assembled using data from public repositories", "biocViews": [ "AnnotationData", "Caenorhabditis_elegans", "InparanoidDb" ], "Author": "Marc Carlson, Herve Pages", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Caenorhabditis_elegans", "source.ver": "src/contrib/hom.Ce.inp.db_3.1.2.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 726 }, "hom.Dm.inp.db": { "Package": "hom.Dm.inp.db", "Version": "3.1.2", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.29.20)" ], "Imports": [ "methods", "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "24599bd0267b6b6f83d9a27d42d72221", "NeedsCompilation": "no", "Title": "Homology information for Drosophila melanogaster from Inparanoid", "Description": "Homology information for Drosophila melanogaster from Inparanoid assembled using data from public repositories", "biocViews": [ "AnnotationData", "Drosophila_melanogaster", "InparanoidDb" ], "Author": "Marc Carlson, Herve Pages", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Drosophila melanogaster", "source.ver": "src/contrib/hom.Dm.inp.db_3.1.2.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 359, "suggestsMe": [ "RpsiXML" ] }, "hom.Dr.inp.db": { "Package": "hom.Dr.inp.db", "Version": "3.1.2", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.29.20)" ], "Imports": [ "methods", "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "d3e588cb6116354605a024ed3e7f5c4e", "NeedsCompilation": "no", "Title": "Homology information for Danio rerio from Inparanoid", "Description": "Homology information for Danio rerio from Inparanoid assembled using data from public repositories", "biocViews": [ "AnnotationData", "Danio_rerio", "InparanoidDb" ], "Author": "Marc Carlson, Herve Pages", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Danio rerio", "source.ver": "src/contrib/hom.Dr.inp.db_3.1.2.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 779 }, "hom.Hs.inp.db": { "Package": "hom.Hs.inp.db", "Version": "3.1.2", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.29.20)" ], "Imports": [ "methods", "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "b0708148e9c6656527e004fbaf80c05c", "NeedsCompilation": "no", "Title": "Homology information for Homo Sapiens from Inparanoid", "Description": "Homology information for Homo Sapiens from Inparanoid assembled using data from public repositories", "biocViews": [ "AnnotationData", "Homo_sapiens", "InparanoidDb" ], "Author": "Marc Carlson, Herve Pages", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Homo sapiens", "source.ver": "src/contrib/hom.Hs.inp.db_3.1.2.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 105, "suggestsMe": [ "annotate", "AnnotationDbi", "AnnotationForge", "AnnotationFuncs", "RpsiXML" ] }, "hom.Mm.inp.db": { "Package": "hom.Mm.inp.db", "Version": "3.1.2", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.29.20)" ], "Imports": [ "methods", "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "27d49db64f3f6049210456121f33d6c0", "NeedsCompilation": "no", "Title": "Homology information for Mus musculus from Inparanoid", "Description": "Homology information for Mus musculus from Inparanoid assembled using data from public repositories", "biocViews": [ "AnnotationData", "InparanoidDb", "Mus_musculus" ], "Author": "Marc Carlson, Herve Pages", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Mus musculus", "source.ver": "src/contrib/hom.Mm.inp.db_3.1.2.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 246, "suggestsMe": [ "RpsiXML" ] }, "hom.Rn.inp.db": { "Package": "hom.Rn.inp.db", "Version": "3.1.2", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.29.20)" ], "Imports": [ "methods", "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "17cf02b55681712da40405ffcd81ea5b", "NeedsCompilation": "no", "Title": "Homology information for Rattus norvegicus from Inparanoid", "Description": "Homology information for Rattus norvegicus from Inparanoid assembled using data from public repositories", "biocViews": [ "AnnotationData", "InparanoidDb", "Rattus_norvegicus" ], "Author": "Marc Carlson, Herve Pages", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Rattus norvegicus", "source.ver": "src/contrib/hom.Rn.inp.db_3.1.2.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 337, "suggestsMe": [ "RpsiXML" ] }, "hom.Sc.inp.db": { "Package": "hom.Sc.inp.db", "Version": "3.1.2", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.29.20)" ], "Imports": [ "methods", "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "e3f58421e9067e8109e3e077b0109511", "NeedsCompilation": "no", "Title": "Homology information for Saccharomyces cerevisiae from Inparanoid", "Description": "Homology information for Saccharomyces cerevisiae from Inparanoid assembled using data from public repositories", "biocViews": [ "AnnotationData", "InparanoidDb", "Saccharomyces_cerevisiae" ], "Author": "Marc Carlson, Herve Pages", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Saccharomyces cerevisiae", "source.ver": "src/contrib/hom.Sc.inp.db_3.1.2.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 396, "suggestsMe": [ "RpsiXML" ] }, "Homo.sapiens": { "Package": "Homo.sapiens", "Version": "1.3.1", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.17.11)", "methods", "OrganismDbi (>= 1.11.39)", "GenomicFeatures", "GO.db", "org.Hs.eg.db", "TxDb.Hsapiens.UCSC.hg19.knownGene" ], "Imports": [ "GenomicFeatures", "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "653b60cfcdaefd171729115cd629b585", "NeedsCompilation": "no", "Title": "Annotation package for the Homo.sapiens object", "Description": "Contains the Homo.sapiens object to access data from several related annotation packages.", "biocViews": [ "AnnotationData", "Genetics", "Homo_sapiens", "OrganismDb" ], "Author": "Bioconductor Core Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Homo sapiens", "source.ver": "src/contrib/Homo.sapiens_1.3.1.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 20, "suggestsMe": [ "AnnotationForge", "CINdex", "epivizrChart", "GenomicFiles", "geuvStore2", "ggbio", "GOfuncR", "gQTLBase", "methylumi", "OrganismDbi", "RTCGAToolbox", "TFutils" ], "dependsOnMe": [ "annotation", "chimera", "erma", "GGtools", "gQTLstats", "GSReg", "gwascat", "ldblock", "liftOver", "mCSEA", "yriMulti" ] }, "hs25kresogen.db": { "Package": "hs25kresogen.db", "Version": "2.5.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.13.19)", "org.Hs.eg.db (>= 2.5.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "annotate" ], "License": "Artistic-2.0", "MD5sum": "a3800d072ce0e5f6f5d8299538b99cca", "NeedsCompilation": "no", "Title": "RNG_MRC Human Pangenomic 25k Set annotation data (chip hs25kresogen)", "Description": "RNG_MRC Human Pangenomic 25k Set annotation data (chip hs25kresogen) assembled using data from public repositories", "biocViews": [ "AnnotationData", "Homo_sapiens", "RNG_MRCChip", "hs25kresogen" ], "Author": "AltraBio", "Maintainer": "Simon de Bernard ", "organism": "Homo sapiens", "manufacturer": "RNG_MRC", "source.ver": "src/contrib/hs25kresogen.db_2.5.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 726 }, "Hs6UG171.db": { "Package": "Hs6UG171.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Hs.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "7aaf8a2441941f70247275c93735ed3b", "NeedsCompilation": "no", "Title": "A package containing metadata for Hs6UG171 arrays", "Description": "A package containing metadata for Hs6UG171 arrays assembled using data from public repositories", "biocViews": [ "AnnotationData", "CUSTOMChip", "ChipDb", "Homo_sapiens", "Hs6UG171" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Homo sapiens", "manufacturer": "CUSTOM", "source.ver": "src/contrib/Hs6UG171.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 591 }, "HsAgilentDesign026652.db": { "Package": "HsAgilentDesign026652.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Hs.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "dcd2c748bf9d7c002611cd5cf2ff38c0", "NeedsCompilation": "no", "Title": "Agilent Chips that use Agilent design number 026652 annotation data (chip HsAgilentDesign026652)", "Description": "Agilent Chips that use Agilent design number 026652 annotation data (chip HsAgilentDesign026652) assembled using data from public repositories", "biocViews": [ "AgilentChip", "AnnotationData", "ChipDb", "Homo_sapiens", "HsAgilentDesign026652" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Homo sapiens", "manufacturer": "Agilent", "source.ver": "src/contrib/HsAgilentDesign026652.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 171 }, "Hspec": { "Package": "Hspec", "Version": "0.99.1", "Depends": [ "R (>= 2.10)", "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "0ade3e3147c8f0086e9be2312cccdfeb", "NeedsCompilation": "no", "Title": "Hspec", "Description": "A package containing an environment representing the HGU133Plus2_Hs_Hspec.cdf file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "Hspec", "cdf" ], "Author": "Sara Erika Bellomo , Claudio Isella, Enzo Medico", "Maintainer": "Bellomo S.E. ", "source.ver": "src/contrib/Hspec_0.99.1.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "hspeccdf": { "Package": "hspeccdf", "Version": "0.99.1", "Depends": [ "R (>= 2.10)", "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "89f81adf91094710558ce6aec79fc7fd", "NeedsCompilation": "no", "Title": "hspeccdf", "Description": "A package containing an environment representing the HGU133Plus2_Hs_Hspec.cdf file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "Hspec", "cdf" ], "Author": "Sara Erika Bellomo , Claudio Isella, Enzo Medico", "Maintainer": "Bellomo S.E. ", "source.ver": "src/contrib/hspeccdf_0.99.1.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 779 }, "hta20probeset.db": { "Package": "hta20probeset.db", "Version": "8.7.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.39.4)", "org.Hs.eg.db (>= 3.4.2)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "d2123b0ecd324626b06a920f947a114e", "NeedsCompilation": "no", "Title": "Affymetrix hta20 annotation data (chip hta20probeset)", "Description": "Affymetrix hta20 annotation data (chip hta20probeset) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Homo_sapiens", "hta20probeset" ], "Author": "James W. MacDonald", "Maintainer": "Biocore Package Maintainer ", "organism": "Homo sapiens", "manufacturer": "Affymetrix", "source.ver": "src/contrib/hta20probeset.db_8.7.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 291 }, "hta20transcriptcluster.db": { "Package": "hta20transcriptcluster.db", "Version": "8.7.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.39.4)", "org.Hs.eg.db (>= 3.4.2)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "c7cdfe80bf2f7aa86fa3caff6da0c34c", "NeedsCompilation": "no", "Title": "Affymetrix hta20 annotation data (chip hta20transcriptcluster)", "Description": "Affymetrix hta20 annotation data (chip hta20transcriptcluster) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Homo_sapiens", "hta20transcriptcluster" ], "Author": "James W. MacDonald", "Maintainer": "Biocore Package Maintainer ", "organism": "Homo sapiens", "manufacturer": "Affymetrix", "source.ver": "src/contrib/hta20transcriptcluster.db_8.7.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 183 }, "hthgu133a.db": { "Package": "hthgu133a.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Hs.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "df8c18dcb8d0adfb6f7a9306cbe9b162", "NeedsCompilation": "no", "Title": "Affymetrix HT Human Genome U133 Array Plate Set annotation data (chip hthgu133a)", "Description": "Affymetrix HT Human Genome U133 Array Plate Set annotation data (chip hthgu133a) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Homo_sapiens", "hthgu133a" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Homo sapiens", "manufacturer": "Affymetrix", "source.ver": "src/contrib/hthgu133a.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 146 }, "hthgu133acdf": { "Package": "hthgu133acdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "b92e543867f1f0c08bfa9299e123d608", "NeedsCompilation": "no", "Title": "hthgu133acdf", "Description": "A package containing an environment representing the HT_HG-U133A.cdf file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "hthgu133a" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/hthgu133acdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 165 }, "hthgu133afrmavecs": { "Package": "hthgu133afrmavecs", "Version": "1.3.0", "Depends": [ "R (>= 2.10.0)" ], "License": "GPL (>= 2)", "MD5sum": "be3f3d67a94dca3b080c184fba5ff6d8", "NeedsCompilation": "no", "Title": "Vectors used by frma for microarrays of type hthgu133a", "Description": "This package was created by frmaTools version 1.19.3 and hgu133ahsentrezgcdf version 19.0.0.", "biocViews": [ "AffymetrixChip", "AnnotationData", "FRMA", "Homo_sapiens", "hthgu133a" ], "Author": "Matthew N. McCall , Rafael A. Irizarry ", "Maintainer": "Matthew N. McCall ", "source.ver": "src/contrib/hthgu133afrmavecs_1.3.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 359 }, "hthgu133aprobe": { "Package": "hthgu133aprobe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "cdc17ea670719f055ee75bea1415c754", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type hthgu133a", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HT\\_HG-U133A\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "hthgu133a", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/hthgu133aprobe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 396 }, "hthgu133b.db": { "Package": "hthgu133b.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Hs.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "a6dfceb47a306ec5365d8376dbb036c7", "NeedsCompilation": "no", "Title": "Affymetrix HT Human Genome U133 Array Plate Set annotation data (chip hthgu133b)", "Description": "Affymetrix HT Human Genome U133 Array Plate Set annotation data (chip hthgu133b) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Homo_sapiens", "hthgu133b" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Homo sapiens", "manufacturer": "Affymetrix", "source.ver": "src/contrib/hthgu133b.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 359 }, "hthgu133bcdf": { "Package": "hthgu133bcdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "935ae53fb168d9c7890d71020ef4c366", "NeedsCompilation": "no", "Title": "hthgu133bcdf", "Description": "A package containing an environment representing the HT_HG-U133B.cdf file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "hthgu133b" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/hthgu133bcdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 396 }, "hthgu133bprobe": { "Package": "hthgu133bprobe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "8a2e306638a81fdec3b10a014c04c6b9", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type hthgu133b", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HT\\_HG-U133B\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "hthgu133b", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/hthgu133bprobe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 726 }, "hthgu133pluspmcdf": { "Package": "hthgu133pluspmcdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "56d15101d59decac7811caa15b349a9c", "NeedsCompilation": "no", "Title": "hthgu133pluspmcdf", "Description": "A package containing an environment representing the HT_HG-U133_Plus_PM.CDF file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "hthgu133pluspm" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/hthgu133pluspmcdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 191 }, "hthgu133pluspmprobe": { "Package": "hthgu133pluspmprobe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "74713e822a689007892d0eb92dbd456b", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type hthgu133pluspm", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HT\\_HG-U133\\_Plus\\_PM\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "hthgu133pluspm", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/hthgu133pluspmprobe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 359 }, "htmg430acdf": { "Package": "htmg430acdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "aef7a3c3af7d2624ee6fc6f2d22472e2", "NeedsCompilation": "no", "Title": "htmg430acdf", "Description": "A package containing an environment representing the HT_MG-430A.cdf file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "cdf", "htmg430a" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/htmg430acdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 291 }, "htmg430aprobe": { "Package": "htmg430aprobe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "e50cc49b8887b6ef8ee1152ec12d5010", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type htmg430a", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HT\\_MG-430A\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "htmg430a", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/htmg430aprobe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 726 }, "htmg430bcdf": { "Package": "htmg430bcdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "53cc1408504a5f07b5655aa46b969157", "NeedsCompilation": "no", "Title": "htmg430bcdf", "Description": "A package containing an environment representing the HT_MG-430B.cdf file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "cdf", "htmg430b" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/htmg430bcdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 591 }, "htmg430bprobe": { "Package": "htmg430bprobe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "f0e3eb56925d786762dee0c2dc82b530", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type htmg430b", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HT\\_MG-430B\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "htmg430b", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/htmg430bprobe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 779 }, "htmg430pmcdf": { "Package": "htmg430pmcdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "016a54b47adbbed7db989787646a0084", "NeedsCompilation": "no", "Title": "htmg430pmcdf", "Description": "A package containing an environment representing the HT_MG-430_PM.cdf file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "cdf", "htmg430pm" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/htmg430pmcdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 246 }, "htmg430pmprobe": { "Package": "htmg430pmprobe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "f0e053fcc0ca4b5f8c539fc0a3fcb076", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type htmg430pm", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HT\\_MG-430\\_PM\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "htmg430pm", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/htmg430pmprobe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 529 }, "htrat230pmcdf": { "Package": "htrat230pmcdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "c6683d16e8aacccd326f7a7eebb79b98", "NeedsCompilation": "no", "Title": "htrat230pmcdf", "Description": "A package containing an environment representing the HT_Rat230_PM.cdf file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Rattus_norvegicus", "cdf", "htrat230pm" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/htrat230pmcdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 591 }, "htrat230pmprobe": { "Package": "htrat230pmprobe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "e4deeca2dc406367ac4a347e370267cf", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type htrat230pm", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HT\\_Rat230\\_PM\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Rattus_norvegicus", "htrat230pm", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/htrat230pmprobe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 726 }, "htratfocuscdf": { "Package": "htratfocuscdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "04b4952f7d8b607a7eb0f779c08c57dc", "NeedsCompilation": "no", "Title": "htratfocuscdf", "Description": "A package containing an environment representing the HT_Rat-Focus.cdf file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Rattus_norvegicus", "cdf", "htratfocus" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/htratfocuscdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "htratfocusprobe": { "Package": "htratfocusprobe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "26a0963d8aff314a4a1f2c47e9147a8a", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type htratfocus", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HT\\_Rat-Focus\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Rattus_norvegicus", "htratfocus", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/htratfocusprobe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 824 }, "hu35ksuba.db": { "Package": "hu35ksuba.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Hs.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "eef6de6790e904d0b63a3ec8faba2962", "NeedsCompilation": "no", "Title": "Affymetrix Human Genome HU35K Set annotation data (chip hu35ksuba)", "Description": "Affymetrix Human Genome HU35K Set annotation data (chip hu35ksuba) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Homo_sapiens", "hu35ksuba" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Homo sapiens", "manufacturer": "Affymetrix", "source.ver": "src/contrib/hu35ksuba.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "hu35ksubacdf": { "Package": "hu35ksubacdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "c8b82c4755eb62818ca0dbf22de5d25e", "NeedsCompilation": "no", "Title": "hu35ksubacdf", "Description": "A package containing an environment representing the Hu35KsubA.CDF file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "hu35ksuba" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/hu35ksubacdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 529 }, "hu35ksubaprobe": { "Package": "hu35ksubaprobe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "49bd19ec3b6404211f2e410e473fa644", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type hu35ksuba", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Hu35KsubA\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "hu35ksuba", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/hu35ksubaprobe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "hu35ksubb.db": { "Package": "hu35ksubb.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Hs.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "b49fc7bda2b0879d1be1ac0061a7ea98", "NeedsCompilation": "no", "Title": "Affymetrix Human Genome HU35K Set annotation data (chip hu35ksubb)", "Description": "Affymetrix Human Genome HU35K Set annotation data (chip hu35ksubb) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Homo_sapiens", "hu35ksubb" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Homo sapiens", "manufacturer": "Affymetrix", "source.ver": "src/contrib/hu35ksubb.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "hu35ksubbcdf": { "Package": "hu35ksubbcdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "d873b6c521e926b331f799baf10a4e13", "NeedsCompilation": "no", "Title": "hu35ksubbcdf", "Description": "A package containing an environment representing the Hu35KsubB.CDF file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "hu35ksubb" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/hu35ksubbcdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "hu35ksubbprobe": { "Package": "hu35ksubbprobe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "0a63051d0faf38a56f17d5865cbed9b1", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type hu35ksubb", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Hu35KsubB\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "hu35ksubb", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/hu35ksubbprobe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "hu35ksubc.db": { "Package": "hu35ksubc.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Hs.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "f3c215dc2ddbab7ddcdbf015495f87b3", "NeedsCompilation": "no", "Title": "Affymetrix Human Genome HU35K Set annotation data (chip hu35ksubc)", "Description": "Affymetrix Human Genome HU35K Set annotation data (chip hu35ksubc) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Homo_sapiens", "hu35ksubc" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Homo sapiens", "manufacturer": "Affymetrix", "source.ver": "src/contrib/hu35ksubc.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 591 }, "hu35ksubccdf": { "Package": "hu35ksubccdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "de96e69680c5f8747c99d170272d7c3c", "NeedsCompilation": "no", "Title": "hu35ksubccdf", "Description": "A package containing an environment representing the Hu35KsubC.CDF file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "hu35ksubc" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/hu35ksubccdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "hu35ksubcprobe": { "Package": "hu35ksubcprobe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "b10453ea061b09172192bd21baa9083d", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type hu35ksubc", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Hu35KsubC\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "hu35ksubc", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/hu35ksubcprobe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 779 }, "hu35ksubd.db": { "Package": "hu35ksubd.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Hs.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "9b8f09012d27c7b41e0d20321d83a625", "NeedsCompilation": "no", "Title": "Affymetrix Human Genome HU35K Set annotation data (chip hu35ksubd)", "Description": "Affymetrix Human Genome HU35K Set annotation data (chip hu35ksubd) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Homo_sapiens", "hu35ksubd" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Homo sapiens", "manufacturer": "Affymetrix", "source.ver": "src/contrib/hu35ksubd.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "hu35ksubdcdf": { "Package": "hu35ksubdcdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "6f6423426969f306fb0d5171e75b5380", "NeedsCompilation": "no", "Title": "hu35ksubdcdf", "Description": "A package containing an environment representing the Hu35KsubD.CDF file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "hu35ksubd" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/hu35ksubdcdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 529 }, "hu35ksubdprobe": { "Package": "hu35ksubdprobe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "430a9b8ccd646d8cb06e6c1d750eec23", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type hu35ksubd", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Hu35KsubD\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "hu35ksubd", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/hu35ksubdprobe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 726 }, "hu6800.db": { "Package": "hu6800.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Hs.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "7783c1539639aec9d3d736e38b4f028c", "NeedsCompilation": "no", "Title": "Affymetrix HuGeneFL Genome Array annotation data (chip hu6800)", "Description": "Affymetrix HuGeneFL Genome Array annotation data (chip hu6800) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Homo_sapiens", "hu6800" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Homo sapiens", "manufacturer": "Affymetrix", "source.ver": "src/contrib/hu6800.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 52, "suggestsMe": [ "adSplit", "biosigner", "geneplotter", "GlobalAncova", "globaltest", "idiogram", "MLInterfaces", "pcot2", "SAGx" ] }, "hu6800cdf": { "Package": "hu6800cdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "fa2b2ab8f3aba517c63ad2e65873d2f0", "NeedsCompilation": "no", "Title": "hu6800cdf", "Description": "A package containing an environment representing the Hu6800.CDF file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "hu6800" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/hu6800cdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 208 }, "hu6800probe": { "Package": "hu6800probe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "7a2383bd870cbc0628c210174e911250", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type hu6800", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Hu6800\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "hu6800", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/hu6800probe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 268 }, "hu6800subacdf": { "Package": "hu6800subacdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "9e8ec301e066e400564976cd9750297e", "NeedsCompilation": "no", "Title": "hu6800subacdf", "Description": "A package containing an environment representing the Hu6800subA.CDF file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "hu6800suba" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/hu6800subacdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 529 }, "hu6800subbcdf": { "Package": "hu6800subbcdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "529aad5e4e73594c8cb66274d7e4adc5", "NeedsCompilation": "no", "Title": "hu6800subbcdf", "Description": "A package containing an environment representing the Hu6800subB.CDF file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "hu6800subb" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/hu6800subbcdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 591 }, "hu6800subccdf": { "Package": "hu6800subccdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "020fe3a6bdf44efbde15432b968433e8", "NeedsCompilation": "no", "Title": "hu6800subccdf", "Description": "A package containing an environment representing the Hu6800subC.CDF file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "hu6800subc" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/hu6800subccdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 529 }, "hu6800subdcdf": { "Package": "hu6800subdcdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "7966c21babb23e18cca4faafc8720f0a", "NeedsCompilation": "no", "Title": "hu6800subdcdf", "Description": "A package containing an environment representing the Hu6800subD.CDF file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "hu6800subd" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/hu6800subdcdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "huex.1.0.st.v2frmavecs": { "Package": "huex.1.0.st.v2frmavecs", "Version": "1.1.0", "Depends": [ "R (>= 2.10.0)" ], "License": "GPL (>= 2)", "MD5sum": "982935d07b526ff555790e309fe4147e", "NeedsCompilation": "no", "Title": "Vectors used by frma for microarrays of type huex.1.0.st.v2", "Description": "This package was created by frmaTools version 1.9.2.", "biocViews": [ "AffymetrixChip", "AnnotationData", "FRMA", "Homo_sapiens", "huex.1.0.st.v2" ], "Author": "Matthew N. McCall , Sameer Chavan , Rafael A. Irizarry ", "Maintainer": "Matthew N. McCall ", "source.ver": "src/contrib/huex.1.0.st.v2frmavecs_1.1.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "huex10stprobeset.db": { "Package": "huex10stprobeset.db", "Version": "8.7.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.39.4)", "org.Hs.eg.db (>= 3.4.2)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "52cf39820872de4ac5529aa1192328b5", "NeedsCompilation": "no", "Title": "Affymetrix huex10 annotation data (chip huex10stprobeset)", "Description": "Affymetrix huex10 annotation data (chip huex10stprobeset) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Homo_sapiens", "huex10stprobeset" ], "Author": "James W. MacDonald", "Maintainer": "Biocore Package Maintainer ", "organism": "Homo sapiens", "manufacturer": "Affymetrix", "source.ver": "src/contrib/huex10stprobeset.db_8.7.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 278 }, "huex10sttranscriptcluster.db": { "Package": "huex10sttranscriptcluster.db", "Version": "8.7.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.39.4)", "org.Hs.eg.db (>= 3.4.2)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "7fb762002b5792c64ccafbd7bacf92a4", "NeedsCompilation": "no", "Title": "Affymetrix huex10 annotation data (chip huex10sttranscriptcluster)", "Description": "Affymetrix huex10 annotation data (chip huex10sttranscriptcluster) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Homo_sapiens", "huex10sttranscriptcluster" ], "Author": "James W. MacDonald", "Maintainer": "Biocore Package Maintainer ", "organism": "Homo sapiens", "manufacturer": "Affymetrix", "source.ver": "src/contrib/huex10sttranscriptcluster.db_8.7.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 139 }, "HuExExonProbesetLocation": { "Package": "HuExExonProbesetLocation", "Version": "1.15.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.7.17)" ], "License": "LGPL", "MD5sum": "11bf1b88d9e90711b4064497f611da4f", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type HuEx", "Description": "This package was automatically created by package AnnotationForge version 1.7.17. The exon-level probeset genome location was retrieved from Netaffx using AffyCompatible.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "HuEx", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Raffaele A. Calogero ", "source.ver": "src/contrib/HuExExonProbesetLocation_1.15.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 337 }, "HuExExonProbesetLocationHg18": { "Package": "HuExExonProbesetLocationHg18", "Version": "0.0.2", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.8.0)" ], "License": "LGPL", "MD5sum": "bb00b7f5e4db2b04dca5951aa6bd073e", "NeedsCompilation": "no", "Title": "Exon-level probeset chromosome location for microarrays of type HuEx", "Description": "This package was automatically created by package AnnotationDbi version 1.8.0. The exon-level probeset genome location was retrieved from Netaffx using AffyCompatible. The exon-level probeset genome location was retrieved from Netaffx using AffyCompatible. Genome release hg18.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "HuEx" ], "Author": "Raffaele A. Calogero", "Maintainer": "Raffaele A. Calogero ", "source.ver": "src/contrib/HuExExonProbesetLocationHg18_0.0.2.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 824 }, "HuExExonProbesetLocationHg19": { "Package": "HuExExonProbesetLocationHg19", "Version": "0.0.3", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.8)" ], "License": "LGPL", "MD5sum": "1a3843c95c82dc71a043d902961ba33a", "NeedsCompilation": "no", "Title": "Exon-level probeset chromosome location for microarrays of type HuEx", "Description": "This package was automatically created by package AnnotationDbi version 1.11.8. The exon-level probeset genome location was retrieved from Netaffx using AffyCompatible. The exon-level probeset genome location was retrieved from Netaffx using AffyCompatible. Genome release hg19.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "HuEx" ], "Author": "Raffaele A. Calogero", "Maintainer": "Raffaele A. Calogero ", "source.ver": "src/contrib/HuExExonProbesetLocationHg19_0.0.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 359 }, "hugene.1.0.st.v1frmavecs": { "Package": "hugene.1.0.st.v1frmavecs", "Version": "1.1.0", "Depends": [ "R (>= 2.10.0)" ], "License": "GPL (>= 2)", "MD5sum": "711a69e6fa6dd3737a90615222416dfc", "NeedsCompilation": "no", "Title": "Vectors used by frma for microarrays of type hugene.1.0.st.v1frmavecs", "Description": "This package was created by frmaTools version 1.13.0.", "biocViews": [ "AffymetrixChip", "AnnotationData", "FRMA", "Homo_sapiens", "hugene.1.0.st.v1" ], "Author": "Matthew N. McCall , Rafael A. Irizarry ", "Maintainer": "Matthew N. McCall ", "source.ver": "src/contrib/hugene.1.0.st.v1frmavecs_1.1.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 306 }, "hugene10stprobeset.db": { "Package": "hugene10stprobeset.db", "Version": "8.7.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.39.4)", "org.Hs.eg.db (>= 3.4.2)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "8c138a26b4aa0391edd69ef6abed3247", "NeedsCompilation": "no", "Title": "Affymetrix hugene10 annotation data (chip hugene10stprobeset)", "Description": "Affymetrix hugene10 annotation data (chip hugene10stprobeset) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Homo_sapiens", "hugene10stprobeset" ], "Author": "James W. MacDonald", "Maintainer": "Biocore Package Maintainer ", "organism": "Homo sapiens", "manufacturer": "Affymetrix", "source.ver": "src/contrib/hugene10stprobeset.db_8.7.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 118 }, "hugene10sttranscriptcluster.db": { "Package": "hugene10sttranscriptcluster.db", "Version": "8.7.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.39.4)", "org.Hs.eg.db (>= 3.4.2)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "d38c7a0fb26410d420e72c6aacf622ad", "NeedsCompilation": "no", "Title": "Affymetrix hugene10 annotation data (chip hugene10sttranscriptcluster)", "Description": "Affymetrix hugene10 annotation data (chip hugene10sttranscriptcluster) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Homo_sapiens", "hugene10sttranscriptcluster" ], "Author": "James W. MacDonald", "Maintainer": "Biocore Package Maintainer ", "organism": "Homo sapiens", "manufacturer": "Affymetrix", "source.ver": "src/contrib/hugene10sttranscriptcluster.db_8.7.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 43, "suggestsMe": [ "ArrayTools", "pcaGoPromoter" ] }, "hugene10stv1cdf": { "Package": "hugene10stv1cdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "f1fb1c7076ac40b9e709f18e645d6181", "NeedsCompilation": "no", "Title": "hugene10stv1cdf", "Description": "A package containing an environment representing the HuGene-1_0-st-v1.cdf file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "hugene10stv1" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/hugene10stv1cdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 57 }, "hugene10stv1probe": { "Package": "hugene10stv1probe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "6ed3c17dd026acf008658a5994044c62", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type hugene10stv1", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HuGene-1\\_0-st-v1\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "hugene10stv1", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/hugene10stv1probe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 153 }, "hugene11stprobeset.db": { "Package": "hugene11stprobeset.db", "Version": "8.7.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.39.4)", "org.Hs.eg.db (>= 3.4.2)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "315c1dff0ba5240c6c5432d0dcc11eb1", "NeedsCompilation": "no", "Title": "Affymetrix hugene11 annotation data (chip hugene11stprobeset)", "Description": "Affymetrix hugene11 annotation data (chip hugene11stprobeset) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Homo_sapiens", "hugene11stprobeset" ], "Author": "James W. MacDonald", "Maintainer": "Biocore Package Maintainer ", "organism": "Homo sapiens", "manufacturer": "Affymetrix", "source.ver": "src/contrib/hugene11stprobeset.db_8.7.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 291 }, "hugene11sttranscriptcluster.db": { "Package": "hugene11sttranscriptcluster.db", "Version": "8.7.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.39.4)", "org.Hs.eg.db (>= 3.4.2)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "0d366281eac2cba4b1fcfbe48596975a", "NeedsCompilation": "no", "Title": "Affymetrix hugene11 annotation data (chip hugene11sttranscriptcluster)", "Description": "Affymetrix hugene11 annotation data (chip hugene11sttranscriptcluster) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Homo_sapiens", "hugene11sttranscriptcluster" ], "Author": "James W. MacDonald", "Maintainer": "Biocore Package Maintainer ", "organism": "Homo sapiens", "manufacturer": "Affymetrix", "source.ver": "src/contrib/hugene11sttranscriptcluster.db_8.7.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 146 }, "hugene20stprobeset.db": { "Package": "hugene20stprobeset.db", "Version": "8.7.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.39.4)", "org.Hs.eg.db (>= 3.4.2)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "17e599fe0f885f17de29a6174324054d", "NeedsCompilation": "no", "Title": "Affymetrix hugene20 annotation data (chip hugene20stprobeset)", "Description": "Affymetrix hugene20 annotation data (chip hugene20stprobeset) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Homo_sapiens", "hugene20stprobeset" ], "Author": "James W. MacDonald", "Maintainer": "Biocore Package Maintainer ", "organism": "Homo sapiens", "manufacturer": "Affymetrix", "source.ver": "src/contrib/hugene20stprobeset.db_8.7.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 261 }, "hugene20sttranscriptcluster.db": { "Package": "hugene20sttranscriptcluster.db", "Version": "8.7.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.39.4)", "org.Hs.eg.db (>= 3.4.2)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "85b23453d8e7c6c92673deaa7a82e51e", "NeedsCompilation": "no", "Title": "Affymetrix hugene20 annotation data (chip hugene20sttranscriptcluster)", "Description": "Affymetrix hugene20 annotation data (chip hugene20sttranscriptcluster) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Homo_sapiens", "hugene20sttranscriptcluster" ], "Author": "James W. MacDonald", "Maintainer": "Biocore Package Maintainer ", "organism": "Homo sapiens", "manufacturer": "Affymetrix", "source.ver": "src/contrib/hugene20sttranscriptcluster.db_8.7.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 120 }, "hugene21stprobeset.db": { "Package": "hugene21stprobeset.db", "Version": "8.7.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.39.4)", "org.Hs.eg.db (>= 3.4.2)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "ad101fb652b87da23d17547268019bb8", "NeedsCompilation": "no", "Title": "Affymetrix hugene21 annotation data (chip hugene21stprobeset)", "Description": "Affymetrix hugene21 annotation data (chip hugene21stprobeset) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Homo_sapiens", "hugene21stprobeset" ], "Author": "James W. MacDonald", "Maintainer": "Biocore Package Maintainer ", "organism": "Homo sapiens", "manufacturer": "Affymetrix", "source.ver": "src/contrib/hugene21stprobeset.db_8.7.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 337 }, "hugene21sttranscriptcluster.db": { "Package": "hugene21sttranscriptcluster.db", "Version": "8.7.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.39.4)", "org.Hs.eg.db (>= 3.4.2)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "7d4d913f3e48f3eab45e036323d223b5", "NeedsCompilation": "no", "Title": "Affymetrix hugene21 annotation data (chip hugene21sttranscriptcluster)", "Description": "Affymetrix hugene21 annotation data (chip hugene21sttranscriptcluster) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Homo_sapiens", "hugene21sttranscriptcluster" ], "Author": "James W. MacDonald", "Maintainer": "Biocore Package Maintainer ", "organism": "Homo sapiens", "manufacturer": "Affymetrix", "source.ver": "src/contrib/hugene21sttranscriptcluster.db_8.7.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 233 }, "human.db0": { "Package": "human.db0", "Version": "3.6.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.41.4)" ], "Imports": [ "methods", "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "2e8f751db3c5221b71ab2f24be5b7c83", "NeedsCompilation": "no", "Title": "Base Level Annotation databases for human", "Description": "Base annotation databases for human, intended ONLY to be used by AnnotationDbi to produce regular annotation packages.", "biocViews": [ "AnnotationData", "Homo_sapiens", "db0" ], "Author": "Bioconductor Core Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Homo sapiens", "source.ver": "src/contrib/human.db0_3.6.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 127, "suggestsMe": [ "AnnotationForge" ] }, "human1mduov3bCrlmm": { "Package": "human1mduov3bCrlmm", "Version": "1.0.4", "Imports": [ "utils" ], "License": "Artistic-2.0", "MD5sum": "0ff9f1e8bcc6348d6777bbb982ae0325", "NeedsCompilation": "no", "Title": "Metadata for fast genotyping with the 'crlmm' package", "Description": "Package with metadata for genotyping Illumina 1M Duo arrays using the 'crlmm' package.", "biocViews": [ "AnnotationData" ], "Author": "Rafael A Irizarry", "Maintainer": "Matthew Ritchie ", "source.ver": "src/contrib/human1mduov3bCrlmm_1.0.4.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "human1mv1cCrlmm": { "Package": "human1mv1cCrlmm", "Version": "1.0.3", "Imports": [ "utils" ], "License": "Artistic-2.0", "MD5sum": "b9f638c7b0ede50cb070f1bae85eb4dc", "NeedsCompilation": "no", "Title": "Metadata for fast genotyping with the 'crlmm' package", "Description": "Package with metadata fast genotyping Illumina 1M arrays using the 'crlmm' package.", "biocViews": [ "AnnotationData" ], "Author": "Rafael A Irizarry", "Maintainer": "Matthew Ritchie ", "source.ver": "src/contrib/human1mv1cCrlmm_1.0.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 726 }, "human370quadv3cCrlmm": { "Package": "human370quadv3cCrlmm", "Version": "1.0.3", "Imports": [ "utils" ], "License": "Artistic-2.0", "MD5sum": "33c3ccc3793ed95647418b746a5177f9", "NeedsCompilation": "no", "Title": "Metadata for fast genotyping with the 'crlmm' package", "Description": "Package with metadata for genotyping Illumina 370kQuad arrays using the 'crlmm' package.", "biocViews": [ "AnnotationData" ], "Author": "Rafael A Irizarry", "Maintainer": "Matthew Ritchie ", "source.ver": "src/contrib/human370quadv3cCrlmm_1.0.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 726 }, "human370v1cCrlmm": { "Package": "human370v1cCrlmm", "Version": "1.0.2", "Imports": [ "utils" ], "License": "Artistic-2.0", "MD5sum": "9ec4192f533faee2b14484de02548075", "NeedsCompilation": "no", "Title": "Metadata for fast genotyping with the 'crlmm' package", "Description": "Package with metadata for genotyping Illumina 370k arrays using the 'crlmm' package.", "biocViews": [ "AnnotationData" ], "Author": "Rafael A Irizarry", "Maintainer": "Matthew Ritchie ", "source.ver": "src/contrib/human370v1cCrlmm_1.0.2.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 246, "suggestsMe": [ "oligoClasses" ] }, "human550v3bCrlmm": { "Package": "human550v3bCrlmm", "Version": "1.0.4", "Imports": [ "utils" ], "License": "Artistic-2.0", "MD5sum": "20e6b008fab5e1084354c87ad50d18a8", "NeedsCompilation": "no", "Title": "Metadata for fast genotyping with the 'crlmm' package", "Description": "Package with metadata for genotyping Illumina 550k arrays using the 'crlmm' package.", "biocViews": [ "AnnotationData" ], "Author": "Rafael A Irizarry", "Maintainer": "Matthew Ritchie ", "source.ver": "src/contrib/human550v3bCrlmm_1.0.4.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "human610quadv1bCrlmm": { "Package": "human610quadv1bCrlmm", "Version": "1.0.3", "Imports": [ "utils" ], "License": "Artistic-2.0", "MD5sum": "609cf09410774e084ee6a3286652bb1a", "NeedsCompilation": "no", "Title": "Metadata for fast genotyping with the 'crlmm' package", "Description": "Package with metadata for genotyping Illumina 610kQuad arrays using the 'crlmm' package.", "biocViews": [ "AnnotationData" ], "Author": "Rafael A Irizarry", "Maintainer": "Matthew Ritchie ", "source.ver": "src/contrib/human610quadv1bCrlmm_1.0.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 278, "suggestsMe": [ "MinimumDistance", "VanillaICE" ] }, "human650v3aCrlmm": { "Package": "human650v3aCrlmm", "Version": "1.0.3", "Imports": [ "utils" ], "License": "Artistic-2.0", "MD5sum": "4b0de367ccc0f7499dcffe21ef1893c2", "NeedsCompilation": "no", "Title": "Metadata for fast genotyping with the 'crlmm' package", "Description": "Package with metadata for genotyping Illumina 650k arrays using the 'crlmm' package.", "biocViews": [ "AnnotationData" ], "Author": "Rafael A Irizarry", "Maintainer": "Matthew Ritchie ", "source.ver": "src/contrib/human650v3aCrlmm_1.0.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "human660quadv1aCrlmm": { "Package": "human660quadv1aCrlmm", "Version": "1.0.3", "Imports": [ "utils" ], "License": "Artistic-2.0", "MD5sum": "5fd2d94a462e150c888f13c5c0975c36", "NeedsCompilation": "no", "Title": "Metadata for fast genotyping with the 'crlmm' package", "Description": "Package with metadata for genotyping Illumina 660kQuad arrays using the 'crlmm' package.", "biocViews": [ "AnnotationData" ], "Author": "Rafael A Irizarry", "Maintainer": "Matthew Ritchie ", "source.ver": "src/contrib/human660quadv1aCrlmm_1.0.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 779 }, "humanCHRLOC": { "Package": "humanCHRLOC", "Version": "2.1.6", "Depends": [ "R(>= 2.7.0)" ], "License": "The Artistic License, Version 2.0", "MD5sum": "113450c0822000c9b4e8a0141cf4b819", "NeedsCompilation": "no", "Title": "A data package containing annotation data for humanCHRLOC", "Description": "Annotation data file for humanCHRLOC assembled using data from public data repositories", "biocViews": [ "AnnotationData", "FunctionalAnnotation", "Homo_sapiens" ], "Author": "Ting-Yuan Liu, ChenWei Lin, Seth Falcon, Jianhua Zhang, James W. MacDonald", "Maintainer": "Biocore Data Team ", "organism": "Homo sapiens", "source.ver": "src/contrib/humanCHRLOC_2.1.6.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 186, "suggestsMe": [ "annotate" ] }, "humancytosnp12v2p1hCrlmm": { "Package": "humancytosnp12v2p1hCrlmm", "Version": "1.0.1", "Imports": [ "utils" ], "License": "Artistic-2.0", "MD5sum": "edf80245ddb28afb9fbaa6668187bf3a", "NeedsCompilation": "no", "Title": "Metadata for fast genotyping with the 'crlmm' package", "Description": "Package with metadata for genotyping Illumina CytoSNP 12 arrays using the 'crlmm' package.", "biocViews": [ "AnnotationData" ], "Author": "Rafael A Irizarry", "Maintainer": "Matthew Ritchie ", "source.ver": "src/contrib/humancytosnp12v2p1hCrlmm_1.0.1.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "humanomni1quadv1bCrlmm": { "Package": "humanomni1quadv1bCrlmm", "Version": "1.0.3", "Imports": [ "utils" ], "License": "Artistic-2.0", "MD5sum": "e81b2603f37d4cda3f28cd69a7296a23", "NeedsCompilation": "no", "Title": "Metadata for fast genotyping with the 'crlmm' package", "Description": "Package with metadata for genotyping Illumina Omni1 Quad arrays using the 'crlmm' package.", "biocViews": [ "AnnotationData" ], "Author": "Rafael A Irizarry", "Maintainer": "Matthew Ritchie ", "source.ver": "src/contrib/humanomni1quadv1bCrlmm_1.0.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 875 }, "humanomni25quadv1bCrlmm": { "Package": "humanomni25quadv1bCrlmm", "Version": "1.0.2", "Imports": [ "utils" ], "License": "Artistic-2.0", "MD5sum": "2ee1fa7bf712d7f81a167079c975d49f", "NeedsCompilation": "no", "Title": "Metadata for fast genotyping with the 'crlmm' package", "Description": "Package with metadata for genotyping Illumina Omni2.5 Quad arrays using the 'crlmm' package.", "biocViews": [ "AnnotationData" ], "Author": "Rafael A Irizarry", "Maintainer": "Matthew Ritchie ", "source.ver": "src/contrib/humanomni25quadv1bCrlmm_1.0.2.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 726 }, "humanomni5quadv1bCrlmm": { "Package": "humanomni5quadv1bCrlmm", "Version": "1.0.0", "Imports": [ "utils" ], "License": "Artistic-2.0", "MD5sum": "3ac4d6867c3d5590a6308d6edff0912b", "NeedsCompilation": "no", "Title": "Metadata for fast genotyping with the 'crlmm' package", "Description": "Package with metadata for genotyping Illumina Omni5 Quad arrays using the 'crlmm' package.", "biocViews": [ "AnnotationData" ], "Author": "Rafael A Irizarry", "Maintainer": "Matthew Ritchie ", "source.ver": "src/contrib/humanomni5quadv1bCrlmm_1.0.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 726 }, "humanomniexpress12v1bCrlmm": { "Package": "humanomniexpress12v1bCrlmm", "Version": "1.0.1", "Imports": [ "utils" ], "License": "Artistic-2.0", "MD5sum": "abdb730fc230db669e588e024ee7624b", "NeedsCompilation": "no", "Title": "Metadata for fast genotyping with the 'crlmm' package", "Description": "Package with metadata for genotyping Illumina Omni Express 12 arrays using the 'crlmm' package.", "biocViews": [ "AnnotationData" ], "Author": "Rafael A Irizarry", "Maintainer": "Matthew Ritchie ", "source.ver": "src/contrib/humanomniexpress12v1bCrlmm_1.0.1.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "HuO22.db": { "Package": "HuO22.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Hs.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "ddabf6c01f94c1dfd6ab35b40852828a", "NeedsCompilation": "no", "Title": "FHCRC Genomics Shared Resource HuO22 Annotation Data (HuO22)", "Description": "FHCRC Genomics Shared Resource HuO22 Annotation Data (HuO22) assembled using data from public repositories", "biocViews": [ "AnnotationData", "ChipDb", "FHCRC Genomics Shared ResourceChip", "Homo_sapiens", "HuO22" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Homo sapiens", "manufacturer": "FHCRC Genomics Shared Resource", "source.ver": "src/contrib/HuO22.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 824 }, "hwgcod.db": { "Package": "hwgcod.db", "Version": "3.4.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.31.18)", "org.Hs.eg.db (>= 3.2.1)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "a46bf1a242853bbab26351a11b18030a", "NeedsCompilation": "no", "Title": "Codelink Human Whole Genome Bioarray (~55 000 human genes) annotation data (chip hwgcod)", "Description": "Codelink Human Whole Genome Bioarray (~55 000 human genes) annotation data (chip hwgcod) assembled using data from public repositories", "biocViews": [ "AnnotationData", "ChipDb", "CodelinkChip", "Homo_sapiens", "hwgcod" ], "Author": "Diego Diez", "Maintainer": "Diego Diez ", "organism": "Homo sapiens", "manufacturer": "Codelink", "source.ver": "src/contrib/hwgcod.db_3.4.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 591 }, "IlluminaHumanMethylation27k.db": { "Package": "IlluminaHumanMethylation27k.db", "Version": "1.4.8", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.11.9)", "org.Hs.eg.db (>= 2.4.5)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "annotate" ], "License": "Artistic-2.0", "MD5sum": "70586bda9db01d598723bb439c315367", "NeedsCompilation": "no", "Title": "Illumina Illumina Human Methylation 27k annotation data (chip IlluminaHumanMethylation27k)", "Description": "Illumina Illumina Human Methylation 27k annotation data (chip IlluminaHumanMethylation27k) assembled using data from public repositories", "biocViews": [ "AnnotationData", "DNAMethylation", "Homo_sapiens", "IlluminaChip" ], "Author": "Sean Davis ", "Maintainer": "Tim Triche, Jr. ", "organism": "Homo sapiens", "manufacturer": "Illumina", "source.ver": "src/contrib/IlluminaHumanMethylation27k.db_1.4.8.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 158 }, "IlluminaHumanMethylation27kanno.ilmn12.hg19": { "Package": "IlluminaHumanMethylation27kanno.ilmn12.hg19", "Version": "0.6.0", "Depends": [ "R (>= 3.3.0)", "minfi (>= 1.19.15)" ], "License": "Artistic-2.0", "MD5sum": "765851336506120467c2e3cc6beef7ed", "NeedsCompilation": "no", "Title": "Annotation for Illumina's 27k methylation arrays", "Description": "An annotation package for Illumina's EPIC methylation arrays.", "biocViews": [ "AnnotationData", "Homo_sapiens", "IlluminaChip" ], "Author": "Jean-Philippe Fortin, Kasper Daniel Hansen", "Maintainer": "Kasper Daniel Hansen ", "source.ver": "src/contrib/IlluminaHumanMethylation27kanno.ilmn12.hg19_0.6.0.tar.gz", "hasREADME": false, "hasNEWS": true, "hasINSTALL": false, "hasLICENSE": false, "Rank": 116, "importsMe": [ "TCGAbiolinksGUI" ] }, "IlluminaHumanMethylation27kmanifest": { "Package": "IlluminaHumanMethylation27kmanifest", "Version": "0.4.0", "Depends": [ "R (>= 2.13.0)", "minfi" ], "License": "Artistic-2.0", "MD5sum": "c4cdda637dccf85f193342c7262b02a6", "NeedsCompilation": "no", "Title": "Annotation for Illumina's 27k methylation arrays", "Description": "Manifest for Illumina's 27k array data", "biocViews": [ "AnnotationData", "DNAMethylation", "Homo_sapiens", "IlluminaChip" ], "Author": "Kasper Daniel Hansen", "Maintainer": "Kasper Daniel Hansen ", "source.ver": "src/contrib/IlluminaHumanMethylation27kmanifest_0.4.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 113, "importsMe": [ "TCGAbiolinksGUI" ] }, "IlluminaHumanMethylation450kanno.ilmn12.hg19": { "Package": "IlluminaHumanMethylation450kanno.ilmn12.hg19", "Version": "0.6.0", "Depends": [ "R (>= 3.3.0)", "minfi (>= 1.19.15)" ], "License": "Artistic-2.0", "MD5sum": "2f569646ca8adc49863224b1cd076a79", "NeedsCompilation": "no", "Title": "Annotation for Illumina's 450k methylation arrays", "Description": "Manifests and annotation for Illumina's 450k array data.", "biocViews": [ "AnnotationData", "Homo_sapiens", "IlluminaChip" ], "Author": "Kasper Daniel Hansen", "Maintainer": "Kasper Daniel Hansen ", "source.ver": "src/contrib/IlluminaHumanMethylation450kanno.ilmn12.hg19_0.6.0.tar.gz", "hasREADME": false, "hasNEWS": true, "hasINSTALL": false, "hasLICENSE": false, "Rank": 14, "suggestsMe": [ "bigmelon", "DMRcate", "MEAL", "methylumi", "minfi", "RnBeads" ], "dependsOnMe": [ "conumee", "methylationArrayAnalysis", "minfiData", "REMP", "wateRmelon" ], "importsMe": [ "funtooNorm", "missMethyl", "TCGAbiolinksGUI" ] }, "IlluminaHumanMethylation450kmanifest": { "Package": "IlluminaHumanMethylation450kmanifest", "Version": "0.4.0", "Depends": [ "R (>= 2.13.0)", "minfi" ], "License": "Artistic-2.0", "MD5sum": "664d1f5a3892974334faa26757269509", "NeedsCompilation": "no", "Title": "Annotation for Illumina's 450k methylation arrays", "Description": "Manifest for Illumina's 450k array data", "biocViews": [ "AnnotationData", "DNAMethylation", "Homo_sapiens", "IlluminaChip" ], "Author": "Kasper Daniel Hansen, Martin Aryee", "Maintainer": "Kasper Daniel Hansen ", "source.ver": "src/contrib/IlluminaHumanMethylation450kmanifest_0.4.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 19, "suggestsMe": [ "minfi", "RnBeads" ], "dependsOnMe": [ "conumee", "methylationArrayAnalysis", "minfiData", "shinyMethyl", "skewr" ], "importsMe": [ "ChAMP", "funtooNorm", "missMethyl", "TCGAbiolinksGUI" ] }, "IlluminaHumanMethylation450kprobe": { "Package": "IlluminaHumanMethylation450kprobe", "Version": "2.0.6", "Depends": [ "R (>= 2.10)", "AnnotationDbi (>= 1.13.18)" ], "License": "LGPL", "MD5sum": "84c31861fcbaddbf2a9c500b8d8d767d", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type IlluminaHumanMethylation450k", "Description": "Probe sequences from Illumina (ftp.illumina.com) for hm450 probes", "biocViews": [ "AnnotationData", "Homo_sapiens", "Illumina" ], "Author": "Tim Triche, Jr. ", "Maintainer": "Tim Triche, Jr. ", "source.ver": "src/contrib/IlluminaHumanMethylation450kprobe_2.0.6.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 291 }, "IlluminaHumanMethylationEPICanno.ilm10b2.hg19": { "Package": "IlluminaHumanMethylationEPICanno.ilm10b2.hg19", "Version": "0.6.0", "Depends": [ "R (>= 3.3.0)", "minfi (>= 1.19.15)" ], "License": "Artistic-2.0", "MD5sum": "6a8e2398a0f930aa7828a1412fb21e88", "NeedsCompilation": "no", "Title": "Annotation for Illumina's EPIC methylation arrays", "Description": "An annotation package for Illumina's EPIC methylation arrays.", "biocViews": [ "AnnotationData", "Homo_sapiens", "IlluminaChip" ], "Author": "Kasper Daniel Hansen [cre, aut]", "Maintainer": "Kasper Daniel Hansen ", "URL": "https://bitbucket.com/kasperdanielhansen/Illumina_EPIC", "BugReports": "https://bitbucket.com/kasperdanielhansen/Illumina_EPIC/issues", "source.ver": "src/contrib/IlluminaHumanMethylationEPICanno.ilm10b2.hg19_0.6.0.tar.gz", "hasREADME": false, "hasNEWS": true, "hasINSTALL": false, "hasLICENSE": false, "Rank": 23, "suggestsMe": [ "bigmelon", "DMRcate", "MEAL", "wateRmelon" ], "dependsOnMe": [ "conumee", "minfiDataEPIC", "REMP" ], "importsMe": [ "ChAMP", "missMethyl", "TCGAbiolinksGUI" ] }, "IlluminaHumanMethylationEPICanno.ilm10b3.hg19": { "Package": "IlluminaHumanMethylationEPICanno.ilm10b3.hg19", "Version": "0.6.0", "Depends": [ "R (>= 3.3.0)", "minfi (>= 1.19.15)" ], "License": "Artistic-2.0", "MD5sum": "2dac8e889486386eaea1bb7ce1beea2e", "NeedsCompilation": "no", "Title": "Annotation for Illumina's EPIC methylation arrays", "Description": "An annotation package for Illumina's EPIC methylation arrays.", "biocViews": [ "AnnotationData", "Homo_sapiens", "IlluminaChip" ], "Author": "Kasper Daniel Hansen [cre, aut]", "Maintainer": "Kasper Daniel Hansen ", "URL": "https://bitbucket.com/kasperdanielhansen/Illumina_EPIC", "BugReports": "https://bitbucket.com/kasperdanielhansen/Illumina_EPIC/issues", "source.ver": "src/contrib/IlluminaHumanMethylationEPICanno.ilm10b3.hg19_0.6.0.tar.gz", "hasREADME": false, "hasNEWS": true, "hasINSTALL": false, "hasLICENSE": false, "Rank": 200 }, "IlluminaHumanMethylationEPICanno.ilm10b4.hg19": { "Package": "IlluminaHumanMethylationEPICanno.ilm10b4.hg19", "Version": "0.6.0", "Depends": [ "R (>= 3.3.0)", "minfi (>= 1.19.15)" ], "License": "Artistic-2.0", "MD5sum": "2d0c05917bcbf9ba1e354380d4e17a77", "NeedsCompilation": "no", "Title": "Annotation for Illumina's EPIC methylation arrays", "Description": "An annotation package for Illumina's EPIC methylation arrays.", "biocViews": [ "AnnotationData", "Homo_sapiens", "IlluminaChip" ], "Author": "Kasper Daniel Hansen [cre, aut]", "Maintainer": "Kasper Daniel Hansen ", "URL": "https://bitbucket.com/kasperdanielhansen/Illumina_EPIC", "BugReports": "https://bitbucket.com/kasperdanielhansen/Illumina_EPIC/issues", "source.ver": "src/contrib/IlluminaHumanMethylationEPICanno.ilm10b4.hg19_0.6.0.tar.gz", "hasREADME": false, "hasNEWS": true, "hasINSTALL": false, "hasLICENSE": false, "Rank": 167 }, "IlluminaHumanMethylationEPICmanifest": { "Package": "IlluminaHumanMethylationEPICmanifest", "Version": "0.3.0", "Depends": [ "R (>= 3.2.0)", "minfi" ], "License": "Artistic-2.0", "MD5sum": "c6b0268de177badfe0b8184002da7e16", "NeedsCompilation": "no", "Title": "Manifest for Illumina's EPIC methylation arrays", "Description": "A manifest package for Illumina's EPIC methylation arrays.", "biocViews": [ "AnnotationData", "DNAMethylation", "Homo_sapiens", "IlluminaChip" ], "Author": "Kasper Daniel Hansen [cre, aut]", "Maintainer": "Kasper Daniel Hansen ", "URL": "https://bitbucket.com/kasperdanielhansen/Illumina_EPIC", "BugReports": "https://bitbucket.com/kasperdanielhansen/Illumina_EPIC/issues", "source.ver": "src/contrib/IlluminaHumanMethylationEPICmanifest_0.3.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 24, "suggestsMe": [ "wateRmelon" ], "dependsOnMe": [ "ChAMP", "conumee", "minfiDataEPIC" ], "importsMe": [ "missMethyl", "TCGAbiolinksGUI" ] }, "illuminaHumanv1.db": { "Package": "illuminaHumanv1.db", "Version": "1.26.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.29.20)", "org.Hs.eg.db (>= 3.1.2)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "2c362256b7be2861b8bf6e0d1fe46786", "NeedsCompilation": "no", "Title": "Illumina HumanWG6v1 annotation data (chip illuminaHumanv1)", "Description": "Illumina HumanWG6v1 annotation data (chip illuminaHumanv1) assembled using data from public repositories", "biocViews": [ "AnnotationData", "ChipDb", "Homo_sapiens", "IlluminaChip", "illuminaHumanv1" ], "Author": "Mark Dunning, Andy Lynch, Matthew Eldridge", "Maintainer": "Mark Dunning ", "organism": "Homo sapiens", "manufacturer": "Illumina", "source.ver": "src/contrib/illuminaHumanv1.db_1.26.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 59, "suggestsMe": [ "attract", "BeadArrayUseCases", "cgdv17", "GGBase", "GGtools", "hmyriB36" ], "dependsOnMe": [ "GGdata" ] }, "illuminaHumanv2.db": { "Package": "illuminaHumanv2.db", "Version": "1.26.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.29.20)", "org.Hs.eg.db (>= 3.1.2)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "006de5f671a9a68fb27a6b6bce39c555", "NeedsCompilation": "no", "Title": "Illumina HumanWG6v2 annotation data (chip illuminaHumanv2)", "Description": "Illumina HumanWG6v2 annotation data (chip illuminaHumanv2) assembled using data from public repositories", "biocViews": [ "AnnotationData", "ChipDb", "Homo_sapiens", "IlluminaChip", "illuminaHumanv2" ], "Author": "Mark Dunning, Andy Lynch, Matthew Eldridge", "Maintainer": "Mark Dunning ", "organism": "Homo sapiens", "manufacturer": "Illumina", "source.ver": "src/contrib/illuminaHumanv2.db_1.26.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 49, "suggestsMe": [ "BeadArrayUseCases" ] }, "illuminaHumanv2BeadID.db": { "Package": "illuminaHumanv2BeadID.db", "Version": "1.8.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.11.8)", "org.Hs.eg.db (>= 2.4.5)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "annotate" ], "License": "Artistic-2.0", "MD5sum": "b5a2b2deaa9a9b245a141043e7bc5270", "NeedsCompilation": "no", "Title": "Illumina HumanWGv2 annotation data (chip illuminaHumanv2BeadID)", "Description": "Illumina HumanWGv2 annotation data (chip illuminaHumanv2BeadID) assembled using data from public repositories to be used with data summarized from bead-level data with numeric ArrayAddressIDs as keys. Illumina probes with a No match or Bad quality score were removed prior to annotation. See http://www.compbio.group.cam.ac.uk/Resources/Annotation/index.html and Barbosa-Morais et al (2010) A re-annotation pipeline for Illumina BeadArrays: improving the interpretation of gene expression data. Nucleic Acids Research.", "biocViews": [ "AnnotationData", "Homo_sapiens", "IlluminaChip", "illuminaHumanv2BeadID" ], "Author": "Mark Dunning, Matt Ritchie, Nuno Barbosa-Morais", "Maintainer": "Mark Dunning ", "organism": "Homo sapiens", "manufacturer": "Illumina", "source.ver": "src/contrib/illuminaHumanv2BeadID.db_1.8.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 319 }, "illuminaHumanv3.db": { "Package": "illuminaHumanv3.db", "Version": "1.26.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.29.20)", "org.Hs.eg.db (>= 3.1.2)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "7d9e7534f0b60f0e3e7473e545ef373d", "NeedsCompilation": "no", "Title": "Illumina HumanHT12v3 annotation data (chip illuminaHumanv3)", "Description": "Illumina HumanHT12v3 annotation data (chip illuminaHumanv3) assembled using data from public repositories", "biocViews": [ "AnnotationData", "ChipDb", "Homo_sapiens", "IlluminaChip", "illuminaHumanv3" ], "Author": "Mark Dunning, Andy Lynch, Matthew Eldridge", "Maintainer": "Mark Dunning ", "organism": "Homo sapiens", "manufacturer": "Illumina", "source.ver": "src/contrib/illuminaHumanv3.db_1.26.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 44, "suggestsMe": [ "beadarray", "BeadArrayUseCases" ] }, "illuminaHumanv4.db": { "Package": "illuminaHumanv4.db", "Version": "1.26.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.29.20)", "org.Hs.eg.db (>= 3.1.2)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "42d554559ac0106dc71317ffaf466421", "NeedsCompilation": "no", "Title": "Illumina HumanHT12v4 annotation data (chip illuminaHumanv4)", "Description": "Illumina HumanHT12v4 annotation data (chip illuminaHumanv4) assembled using data from public repositories", "biocViews": [ "AnnotationData", "ChipDb", "Homo_sapiens", "IlluminaChip", "illuminaHumanv4" ], "Author": "Mark Dunning, Andy Lynch, Matthew Eldridge", "Maintainer": "Mark Dunning ", "organism": "Homo sapiens", "manufacturer": "Illumina", "source.ver": "src/contrib/illuminaHumanv4.db_1.26.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 33, "suggestsMe": [ "blima", "blimaTestingData" ] }, "illuminaHumanWGDASLv3.db": { "Package": "illuminaHumanWGDASLv3.db", "Version": "1.26.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.29.20)", "org.Hs.eg.db (>= 3.1.2)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "32e8e24555c16f6d0148438d4a841ab8", "NeedsCompilation": "no", "Title": "Illumina HumanHT12WGDASLv3 annotation data (chip illuminaHumanWGDASLv3)", "Description": "Illumina HumanHT12WGDASLv3 annotation data (chip illuminaHumanWGDASLv3) assembled using data from public repositories", "biocViews": [ "AnnotationData", "ChipDb", "Homo_sapiens", "IlluminaChip", "illuminaHumanWGDASLv3" ], "Author": "Mark Dunning, Andy Lynch, Matthew Eldridge", "Maintainer": "Mark Dunning ", "organism": "Homo sapiens", "manufacturer": "Illumina", "source.ver": "src/contrib/illuminaHumanWGDASLv3.db_1.26.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "illuminaHumanWGDASLv4.db": { "Package": "illuminaHumanWGDASLv4.db", "Version": "1.26.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.29.20)", "org.Hs.eg.db (>= 3.1.2)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "4cc1f192de838f2b6c1b148706d354ca", "NeedsCompilation": "no", "Title": "Illumina HumanWGDASLv4 annotation data (chip illuminaHumanWGDASLv4)", "Description": "Illumina HumanWGDASLv4 annotation data (chip illuminaHumanWGDASLv4) assembled using data from public repositories", "biocViews": [ "AnnotationData", "ChipDb", "Homo_sapiens", "IlluminaChip", "illuminaHumanWGDASLv4" ], "Author": "Mark Dunning, Andy Lynch, Matthew Eldridge", "Maintainer": "Mark Dunning ", "organism": "Homo sapiens", "manufacturer": "Illumina", "source.ver": "src/contrib/illuminaHumanWGDASLv4.db_1.26.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 396 }, "illuminaMousev1.db": { "Package": "illuminaMousev1.db", "Version": "1.26.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.29.20)", "org.Mm.eg.db (>= 3.1.2)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "13818c3b9acabe75550492bbe638fc05", "NeedsCompilation": "no", "Title": "Illumina MouseWG6v1 annotation data (chip illuminaMousev1)", "Description": "Illumina MouseWG6v1 annotation data (chip illuminaMousev1) assembled using data from public repositories", "biocViews": [ "AnnotationData", "ChipDb", "IlluminaChip", "Mus_musculus", "illuminaMousev1" ], "Author": "Mark Dunning, Andy Lynch, Matthew Eldridge", "Maintainer": "Mark Dunning ", "organism": "Mus musculus", "manufacturer": "Illumina", "source.ver": "src/contrib/illuminaMousev1.db_1.26.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 95 }, "illuminaMousev1p1.db": { "Package": "illuminaMousev1p1.db", "Version": "1.26.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.29.20)", "org.Mm.eg.db (>= 3.1.2)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "f6a4af01480a6f8d1d2d9b9b64a2b073", "NeedsCompilation": "no", "Title": "Illumina MouseWG6v1p1 annotation data (chip illuminaMousev1p1)", "Description": "Illumina MouseWG6v1p1 annotation data (chip illuminaMousev1p1) assembled using data from public repositories", "biocViews": [ "AnnotationData", "ChipDb", "IlluminaChip", "Mus_musculus", "illuminaMousev1p1" ], "Author": "Mark Dunning, Andy Lynch, Matthew Eldridge", "Maintainer": "Mark Dunning ", "organism": "Mus musculus", "manufacturer": "Illumina", "source.ver": "src/contrib/illuminaMousev1p1.db_1.26.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 95 }, "illuminaMousev2.db": { "Package": "illuminaMousev2.db", "Version": "1.26.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.29.20)", "org.Mm.eg.db (>= 3.1.2)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "fba228a71f264f976d8cdb035861974d", "NeedsCompilation": "no", "Title": "Illumina MouseWG6v2 annotation data (chip illuminaMousev2)", "Description": "Illumina MouseWG6v2 annotation data (chip illuminaMousev2) assembled using data from public repositories", "biocViews": [ "AnnotationData", "ChipDb", "IlluminaChip", "Mus_musculus", "illuminaMousev2" ], "Author": "Mark Dunning, Andy Lynch, Matthew Eldridge", "Maintainer": "Mark Dunning ", "organism": "Mus musculus", "manufacturer": "Illumina", "source.ver": "src/contrib/illuminaMousev2.db_1.26.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 61 }, "illuminaRatv1.db": { "Package": "illuminaRatv1.db", "Version": "1.26.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.29.20)", "org.Rn.eg.db (>= 3.1.2)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "5de2324d7b96c0cdb3301ef269341aa8", "NeedsCompilation": "no", "Title": "Illumina Ratv1 annotation data (chip illuminaRatv1)", "Description": "Illumina Ratv1 annotation data (chip illuminaRatv1) assembled using data from public repositories", "biocViews": [ "AnnotationData", "ChipDb", "IlluminaChip", "Rattus_norvegicus", "illuminaRatv1" ], "Author": "Mark Dunning, Andy Lynch, Matthew Eldridge", "Maintainer": "Mark Dunning ", "organism": "Rattus norvegicus", "manufacturer": "Illumina", "source.ver": "src/contrib/illuminaRatv1.db_1.26.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 100 }, "indac.db": { "Package": "indac.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Dm.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "cba72edcf7278033151e0eac077d8ff8", "NeedsCompilation": "no", "Title": "INDAC FlyChip_long_oligonucleotide_002 (FL002) annotation data (chip indac)", "Description": "INDAC FlyChip_long_oligonucleotide_002 (FL002) annotation data (chip indac) assembled using data from public repositories", "biocViews": [ "AnnotationData", "ChipDb", "Drosophila_melanogaster", "INDACChip", "indac" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Drosophila melanogaster", "manufacturer": "INDAC", "source.ver": "src/contrib/indac.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "JASPAR2018": { "Package": "JASPAR2018", "Version": "1.1.1", "Depends": [ "R (>= 3.4.0)", "methods" ], "Suggests": [ "TFBSTools (>= 1.15.6)" ], "License": "GPL-2", "MD5sum": "d91fce6ea0dc9fa6a3be6ebc05c1af5d", "NeedsCompilation": "no", "Title": "Data package for JASPAR 2018", "Description": "Data package for JASPAR 2018. To search this databases, please use the package TFBSTools (>= 1.15.6).", "biocViews": [ "AnnotationData", "FunctionalAnnotation" ], "Author": "Ge Tan ", "Maintainer": "Ge Tan ", "URL": "http://jaspar.genereg.net/", "source.ver": "src/contrib/JASPAR2018_1.1.1.tar.gz", "hasREADME": false, "hasNEWS": true, "hasINSTALL": false, "hasLICENSE": false, "Rank": 221 }, "JazaeriMetaData.db": { "Package": "JazaeriMetaData.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Hs.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "3a154a74ac2acebe3471b039c9d9a4dc", "NeedsCompilation": "no", "Title": "A data package containing annotation data for JazaeriMetaData", "Description": "A data package containing annotation data for JazaeriMetaData assembled using data from public repositories", "biocViews": [ "AnnotationData", "ChipDb", "Homo_sapiens", "JazaeriMetaData", "National Cancer InstituteChip" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Homo sapiens", "manufacturer": "National Cancer Institute", "source.ver": "src/contrib/JazaeriMetaData.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "KEGG.db": { "Package": "KEGG.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI" ], "License": "file LICENSE", "License_restricts_use": "yes", "MD5sum": "023ac22f57063627c2e62d1ae5e011b0", "NeedsCompilation": "no", "Title": "A set of annotation maps for KEGG", "Description": "A set of annotation maps for KEGG assembled using data from KEGG", "biocViews": [ "AnnotationData", "FunctionalAnnotation" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/KEGG.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": true, "Rank": 8, "suggestsMe": [ "AnnotationDbi", "BiocCaseStudies", "CancerMutationAnalysis", "Category", "categoryCompare", "clusterProfiler", "eisa", "FGNet", "gCMAP", "GeneAnswers", "GenomicRanges", "GlobalAncova", "globaltest", "HTSanalyzeR", "KEGGgraph", "MLP", "pcot2", "PCpheno", "phenoTest", "Rsamtools", "RTopper", "SAGx" ], "dependsOnMe": [ "annaffy", "ExpressionView", "Mulder2012", "PGSEA" ], "importsMe": [ "adSplit", "ExpressionView", "KEGGprofile", "mdgsa", "PADOG", "PCpheno", "SMITE" ] }, "LAPOINTE.db": { "Package": "LAPOINTE.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Hs.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "434b25ad7411201d8be6bb1a0463b387", "NeedsCompilation": "no", "Title": "A package containing metadata for LAPOINTE arrays", "Description": "A package containing metadata for LAPOINTE arrays assembled using data from public repositories", "biocViews": [ "AnnotationData", "CUSTOMChip", "ChipDb", "Homo_sapiens", "LAPOINTE" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Homo sapiens", "manufacturer": "CUSTOM", "source.ver": "src/contrib/LAPOINTE.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 726 }, "LowMACAAnnotation": { "Package": "LowMACAAnnotation", "Version": "0.99.3", "Depends": [ "R (>= 2.10)" ], "Suggests": [ "knitr", "rmarkdown" ], "License": "GPL-3", "MD5sum": "9e0d3fe7f30fe48aef9c4387eb5bacfa", "NeedsCompilation": "no", "Title": "LowMACAAnnotation", "Description": "A package containing the data to run LowMACA package.", "biocViews": [ "AnnotationData", "FunctionalAnnotation" ], "Author": "Stefano de Pretis, Giorgio Melloni", "Maintainer": "Stefano de Pretis , Giorgio Melloni ", "VignetteBuilder": "knitr", "source.ver": "src/contrib/LowMACAAnnotation_0.99.3.tar.gz", "vignettes": [ "vignettes/LowMACAAnnotation/inst/doc/LowMACAAnnotation.pdf" ], "vignetteTitles": [ "LowMACAAnnotation" ], "hasREADME": false, "hasNEWS": true, "hasINSTALL": false, "hasLICENSE": false, "Rfiles": [ "vignettes/LowMACAAnnotation/inst/doc/LowMACAAnnotation.R" ], "Rank": 157, "importsMe": [ "LowMACA" ] }, "lumiHumanAll.db": { "Package": "lumiHumanAll.db", "Version": "1.22.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.23.25)", "org.Hs.eg.db (>= 2.10.1)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "ce7e219b50833ceab203f0bbfb11d917", "NeedsCompilation": "no", "Title": "Illumina Human Illumina expression annotation data (chip lumiHumanAll)", "Description": "Illumina Human Illumina expression annotation data (chip lumiHumanAll) assembled using data from public repositories", "biocViews": [ "AnnotationData", "ChipDb", "Homo_sapiens", "IlluminaChip", "lumiHumanAll" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Homo sapiens", "manufacturer": "Illumina", "source.ver": "src/contrib/lumiHumanAll.db_1.22.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 80, "suggestsMe": [ "lumi" ], "dependsOnMe": [ "eQTL" ], "importsMe": [ "MineICA" ] }, "lumiHumanIDMapping": { "Package": "lumiHumanIDMapping", "Version": "1.10.1", "Depends": [ "R (>= 2.7.0)", "lumi (>= 1.7.14)", "methods", "AnnotationDbi (>= 1.13.13)" ], "Imports": [ "methods", "AnnotationDbi", "DBI" ], "License": "The Artistic License, Version 2.0", "MD5sum": "007e5aa2f1596cc08d888ba6dce7148a", "NeedsCompilation": "no", "Title": "Illumina Identifier mapping for Human", "Description": "This package includes mappings information between different types of Illumina IDs of Illumina Human chips and nuIDs. It also includes mappings of all nuIDs included in Illumina Human chips to RefSeq IDs with mapping qualities information.", "biocViews": [ "AnnotationData", "Homo sapiens" ], "Author": "Pan Du, Gilbert Feng, Warren Kibbe, Simon Lin", "Maintainer": "Gilbert Feng ", "organism": "Homo sapiens", "source.ver": "src/contrib/lumiHumanIDMapping_1.10.1.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 153, "suggestsMe": [ "lumi" ] }, "lumiMouseAll.db": { "Package": "lumiMouseAll.db", "Version": "1.22.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.23.25)", "org.Mm.eg.db (>= 2.10.1)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "6f12330377aaddc83bfa9c37477b999e", "NeedsCompilation": "no", "Title": "Illumina Mouse Illumina expression annotation data (chip lumiMouseAll)", "Description": "Illumina Mouse Illumina expression annotation data (chip lumiMouseAll) assembled using data from public repositories", "biocViews": [ "AnnotationData", "ChipDb", "IlluminaChip", "Mus_musculus", "lumiMouseAll" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Mus musculus", "manufacturer": "Illumina", "source.ver": "src/contrib/lumiMouseAll.db_1.22.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 246 }, "lumiMouseIDMapping": { "Package": "lumiMouseIDMapping", "Version": "1.10.0", "Depends": [ "R (>= 2.7.0)", "lumi (>= 1.7.14)", "methods", "AnnotationDbi (>= 1.13.13)" ], "Imports": [ "methods", "AnnotationDbi" ], "License": "The Artistic License, Version 2.0", "MD5sum": "305aba80ebf6ef4c26899302ea9e50e8", "NeedsCompilation": "no", "Title": "Illumina Identifier mapping for Mouse", "Description": "This package includes mappings information between different types of Illumina IDs of Illumina Mouse chips and nuIDs. It also includes mappings of all nuIDs included in Illumina Mouse chips to RefSeq IDs with mapping qualities information.", "biocViews": [ "AnnotationData", "Mus musculus" ], "Author": "Pan Du, Gilbert Feng, Warren Kibbe, Simon Lin", "Maintainer": "Gilbert Feng ", "organism": "Mus musculus", "source.ver": "src/contrib/lumiMouseIDMapping_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 319 }, "lumiRatAll.db": { "Package": "lumiRatAll.db", "Version": "1.22.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.23.25)", "org.Rn.eg.db (>= 2.10.1)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "65027624574d5e33f18b0a54a54f4be9", "NeedsCompilation": "no", "Title": "Illumina Rat Illumina expression annotation data (chip lumiRatAll)", "Description": "Illumina Rat Illumina expression annotation data (chip lumiRatAll) assembled using data from public repositories", "biocViews": [ "AnnotationData", "ChipDb", "IlluminaChip", "Rattus_norvegicus", "lumiRatAll" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Rattus norvegicus", "manufacturer": "Illumina", "source.ver": "src/contrib/lumiRatAll.db_1.22.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 591 }, "lumiRatIDMapping": { "Package": "lumiRatIDMapping", "Version": "1.10.0", "Depends": [ "R (>= 2.7.0)", "lumi (>= 1.7.14)", "methods", "AnnotationDbi (>= 1.13.13)" ], "Imports": [ "methods", "AnnotationDbi" ], "License": "The Artistic License, Version 2.0", "MD5sum": "1122fc25e3fff62678bed36f9d7b5709", "NeedsCompilation": "no", "Title": "Illumina Identifier mapping for Rat", "Description": "This package includes mappings information between different types of Illumina IDs of Illumina Rat chips and nuIDs. It also includes mappings of all nuIDs included in Illumina Rat chips to RefSeq IDs with mapping qualities information.", "biocViews": [ "AnnotationData", "Rattus norvegicus" ], "Author": "Pan Du, Gilbert Feng, Warren Kibbe, Simon Lin", "Maintainer": "Gilbert Feng ", "organism": "Rattus norvegicus", "source.ver": "src/contrib/lumiRatIDMapping_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "LymphoSeqDB": { "Package": "LymphoSeqDB", "Version": "0.99.2", "Depends": [ "R (>= 3.2)" ], "License": "Artistic-2.0", "MD5sum": "22fc0dc2439ef497982a5ffddda1e418", "NeedsCompilation": "no", "Title": "LymphoSeq annotation databases", "Description": "This package provides annotation databases that support the package LymphoSeq.", "biocViews": [ "AnnotationData", "GenomicSequence", "SequenceAnnotation" ], "Author": "David Coffey ", "Maintainer": "David Coffey ", "source.ver": "src/contrib/LymphoSeqDB_0.99.2.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 142, "dependsOnMe": [ "LymphoSeq" ] }, "m10kcod.db": { "Package": "m10kcod.db", "Version": "3.4.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.31.18)", "org.Mm.eg.db (>= 3.2.1)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "04811628e4b37cd6d24e0b2a17d79ab8", "NeedsCompilation": "no", "Title": "Codelink UniSet Mouse I Bioarray (~10 000 mouse gene targets) annotation data (chip m10kcod)", "Description": "Codelink UniSet Mouse I Bioarray (~10 000 mouse gene targets) annotation data (chip m10kcod) assembled using data from public repositories", "biocViews": [ "AnnotationData", "ChipDb", "CodelinkChip", "Mus_musculus", "m10kcod" ], "Author": "Diego Diez", "Maintainer": "Diego Diez ", "organism": "Mus musculus", "manufacturer": "Codelink", "source.ver": "src/contrib/m10kcod.db_3.4.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "m20kcod.db": { "Package": "m20kcod.db", "Version": "3.4.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.31.18)", "org.Mm.eg.db (>= 3.2.1)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "f2f734fb41e1ae4e949abf09687733bf", "NeedsCompilation": "no", "Title": "Codelink UniSet Mouse 20k I Bioarray annotation data (chip m20kcod)", "Description": "Codelink UniSet Mouse 20k I Bioarray annotation data (chip m20kcod) assembled using data from public repositories", "biocViews": [ "AnnotationData", "ChipDb", "CodelinkChip", "Mus_musculus", "m20kcod" ], "Author": "Diego Diez", "Maintainer": "Diego Diez ", "organism": "Mus musculus", "manufacturer": "Codelink", "source.ver": "src/contrib/m20kcod.db_3.4.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 529 }, "MafDb.1Kgenomes.phase1.GRCh38": { "Package": "MafDb.1Kgenomes.phase1.GRCh38", "Version": "3.7.0", "Depends": [ "R (>= 3.0.0)", "GenomicScores (>= 1.3.19)" ], "Imports": [ "utils", "S4Vectors", "IRanges", "GenomicRanges", "GenomeInfoDb", "BSgenome" ], "Suggests": [ "SNPlocs.Hsapiens.dbSNP149.GRCh38" ], "License": "Artistic-2.0", "MD5sum": "793705d2a4a4a80a770b436c0df52add", "NeedsCompilation": "no", "Title": "Minor allele frequency data from 1000 Genomes Phase 1 for GRCh38", "Description": "Store minor allele frequency data from the Phase 1 of the 1000 Genomes Project for the human genome version GRCh38.", "biocViews": [ "AnnotationData", "Genetics", "GenomicScores", "Homo_sapiens" ], "Author": "Robert Castelo [aut, cre]", "Maintainer": "Robert Castelo ", "source.ver": "src/contrib/MafDb.1Kgenomes.phase1.GRCh38_3.7.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 920 }, "MafDb.1Kgenomes.phase1.hs37d5": { "Package": "MafDb.1Kgenomes.phase1.hs37d5", "Version": "3.7.1", "Depends": [ "R (>= 3.0.0)", "GenomicScores (>= 1.3.19)" ], "Imports": [ "utils", "S4Vectors", "IRanges", "GenomicRanges", "GenomeInfoDb", "BSgenome" ], "Suggests": [ "SNPlocs.Hsapiens.dbSNP144.GRCh37" ], "License": "Artistic-2.0", "MD5sum": "a13d138f00d0f38642f1dfc6cc705050", "NeedsCompilation": "no", "Title": "Minor allele frequency data from 1000 Genomes Phase 1 for hs37d5", "Description": "Store minor allele frequency data from the Phase 1 of the 1000 Genomes Project for the human genome version hs37d5.", "biocViews": [ "AnnotationData", "Genetics", "GenomicScores", "Homo_sapiens" ], "Author": "Robert Castelo [aut, cre]", "Maintainer": "Robert Castelo ", "source.ver": "src/contrib/MafDb.1Kgenomes.phase1.hs37d5_3.7.1.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 337, "suggestsMe": [ "GenomicScores", "VariantFiltering" ] }, "MafDb.1Kgenomes.phase3.GRCh38": { "Package": "MafDb.1Kgenomes.phase3.GRCh38", "Version": "3.7.0", "Depends": [ "R (>= 3.0.0)", "GenomicScores (>= 1.3.19)" ], "Imports": [ "utils", "S4Vectors", "IRanges", "GenomicRanges", "GenomeInfoDb", "BSgenome" ], "Suggests": [ "SNPlocs.Hsapiens.dbSNP149.GRCh38" ], "License": "Artistic-2.0", "MD5sum": "062f9d00e3f0650806520cf39f3f9dac", "NeedsCompilation": "no", "Title": "Minor allele frequency data from 1000 Genomes Phase 3 for GRCh38", "Description": "Store minor allele frequency data from the Phase 3 of the 1000 Genomes Project for the human genome version GRCh38.", "biocViews": [ "AnnotationData", "Genetics", "GenomicScores", "Homo_sapiens" ], "Author": "Robert Castelo [aut, cre]", "Maintainer": "Robert Castelo ", "source.ver": "src/contrib/MafDb.1Kgenomes.phase3.GRCh38_3.7.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 910 }, "MafDb.1Kgenomes.phase3.hs37d5": { "Package": "MafDb.1Kgenomes.phase3.hs37d5", "Version": "3.7.0", "Depends": [ "R (>= 3.0.0)", "GenomicScores (>= 1.3.19)" ], "Imports": [ "utils", "S4Vectors", "IRanges", "GenomicRanges", "GenomeInfoDb", "BSgenome" ], "Suggests": [ "SNPlocs.Hsapiens.dbSNP144.GRCh37" ], "License": "Artistic-2.0", "MD5sum": "a659554d3056e019b4f3a179e9628a2d", "NeedsCompilation": "no", "Title": "Minor allele frequency data from 1000 Genomes Phase 3 for hs37d5", "Description": "Store minor allele frequency data from the Phase 3 of the 1000 Genomes Project for the human genome version hs37d5.", "biocViews": [ "AnnotationData", "Genetics", "GenomicScores", "Homo_sapiens" ], "Author": "Robert Castelo [aut, cre]", "Maintainer": "Robert Castelo ", "source.ver": "src/contrib/MafDb.1Kgenomes.phase3.hs37d5_3.7.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "MafDb.ESP6500SI.V2.SSA137.GRCh38": { "Package": "MafDb.ESP6500SI.V2.SSA137.GRCh38", "Version": "3.7.0", "Depends": [ "R (>= 3.0.0)", "GenomicScores (>= 1.3.19)" ], "Imports": [ "utils", "S4Vectors", "IRanges", "GenomicRanges", "GenomeInfoDb", "BSgenome" ], "Suggests": [ "SNPlocs.Hsapiens.dbSNP149.GRCh38" ], "License": "Artistic-2.0", "MD5sum": "5c6afa001de76b91bc685c5c4b002b05", "NeedsCompilation": "no", "Title": "Minor allele frequency data from NHLBI ESP for GRCh38", "Description": "Store minor allele frequency data from the NHLBI Exome Sequencing Project in the human genome version GRCh38.", "biocViews": [ "AnnotationData", "Genetics", "GenomicScores", "Homo_sapiens" ], "Author": "Robert Castelo", "Maintainer": "Robert Castelo ", "source.ver": "src/contrib/MafDb.ESP6500SI.V2.SSA137.GRCh38_3.7.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 824 }, "MafDb.ESP6500SI.V2.SSA137.hs37d5": { "Package": "MafDb.ESP6500SI.V2.SSA137.hs37d5", "Version": "3.7.0", "Depends": [ "R (>= 3.0.0)", "GenomicScores (>= 1.3.19)" ], "Imports": [ "utils", "S4Vectors", "IRanges", "GenomicRanges", "GenomeInfoDb", "BSgenome" ], "Suggests": [ "SNPlocs.Hsapiens.dbSNP144.GRCh37" ], "License": "Artistic-2.0", "MD5sum": "6ae9642f33195aca7c84240a8642eb8a", "NeedsCompilation": "no", "Title": "Minor allele frequency data from NHLBI ESP for hs37d5", "Description": "Store minor allele frequency data from the NHLBI Exome Sequencing Project in the human genome version hs37d5.", "biocViews": [ "AnnotationData", "Genetics", "GenomicScores", "Homo_sapiens" ], "Author": "Robert Castelo", "Maintainer": "Robert Castelo ", "source.ver": "src/contrib/MafDb.ESP6500SI.V2.SSA137.hs37d5_3.7.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 779 }, "MafDb.ExAC.r1.0.GRCh38": { "Package": "MafDb.ExAC.r1.0.GRCh38", "Version": "3.7.0", "Depends": [ "R (>= 3.0.0)", "GenomicScores (>= 1.3.19)" ], "Imports": [ "utils", "S4Vectors", "IRanges", "GenomicRanges", "GenomeInfoDb", "BSgenome" ], "Suggests": [ "SNPlocs.Hsapiens.dbSNP149.GRCh38" ], "License": "Artistic-2.0", "MD5sum": "ab8ee4f77c84ecb0f8954f9cec199ef4", "NeedsCompilation": "no", "Title": "Minor allele frequency data from ExAC release 1.0 for GRCh38", "Description": "Store minor allele frequency data from the Exome Aggregation Consortium (ExAC release 1.0) for the human genome version GRCh38.", "biocViews": [ "AnnotationData", "Genetics", "GenomicScores", "Homo_sapiens" ], "Author": "Robert Castelo", "Maintainer": "Robert Castelo ", "source.ver": "src/contrib/MafDb.ExAC.r1.0.GRCh38_3.7.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 910 }, "MafDb.ExAC.r1.0.hs37d5": { "Package": "MafDb.ExAC.r1.0.hs37d5", "Version": "3.7.0", "Depends": [ "R (>= 3.0.0)", "GenomicScores (>= 1.3.19)" ], "Imports": [ "utils", "S4Vectors", "IRanges", "GenomicRanges", "GenomeInfoDb", "BSgenome" ], "Suggests": [ "SNPlocs.Hsapiens.dbSNP144.GRCh37" ], "License": "Artistic-2.0", "MD5sum": "a4d494d62a02d808248a058e82e353fa", "NeedsCompilation": "no", "Title": "Minor allele frequency data from ExAC release 1.0 for hs37d5", "Description": "Store minor allele frequency data from the Exome Aggregation Consortium (ExAC release 1.0) for the human genome version hs37d5.", "biocViews": [ "AnnotationData", "Genetics", "GenomicScores", "Homo_sapiens" ], "Author": "Robert Castelo", "Maintainer": "Robert Castelo ", "source.ver": "src/contrib/MafDb.ExAC.r1.0.hs37d5_3.7.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 726 }, "MafDb.ExAC.r1.0.nonTCGA.GRCh38": { "Package": "MafDb.ExAC.r1.0.nonTCGA.GRCh38", "Version": "3.7.0", "Depends": [ "R (>= 3.0.0)", "GenomicScores (>= 1.3.19)" ], "Imports": [ "utils", "S4Vectors", "IRanges", "GenomicRanges", "GenomeInfoDb", "BSgenome" ], "Suggests": [ "SNPlocs.Hsapiens.dbSNP149.GRCh38" ], "License": "Artistic-2.0", "MD5sum": "3826e2d43f9b5cc614dec3ca1059b582", "NeedsCompilation": "no", "Title": "Minor allele frequency data from ExAC release 1.0 subset of nonTCGA exomes for GRCh38", "Description": "Store minor allele frequency data from the Exome Aggregation Consortium (ExAC release 1.0 subset of nonTCGA exomes) for the human genome version GRCh38.", "biocViews": [ "AnnotationData", "Genetics", "GenomicScores", "Homo_sapiens" ], "Author": "Robert Castelo", "Maintainer": "Robert Castelo ", "source.ver": "src/contrib/MafDb.ExAC.r1.0.nonTCGA.GRCh38_3.7.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 916 }, "MafDb.ExAC.r1.0.nonTCGA.hs37d5": { "Package": "MafDb.ExAC.r1.0.nonTCGA.hs37d5", "Version": "3.7.0", "Depends": [ "R (>= 3.0.0)", "GenomicScores (>= 1.3.19)" ], "Imports": [ "utils", "S4Vectors", "IRanges", "GenomicRanges", "GenomeInfoDb", "BSgenome" ], "Suggests": [ "SNPlocs.Hsapiens.dbSNP144.GRCh37" ], "License": "Artistic-2.0", "MD5sum": "f557aba8027c87df7bc0cac088b7eaa2", "NeedsCompilation": "no", "Title": "Minor allele frequency data from ExAC release 1.0 subset of nonTCGA exomes for hs37d5", "Description": "Store minor allele frequency data from the Exome Aggregation Consortium (ExAC release 1.0 subset of nonTCGA exomes) for the human genome version hs37d5.", "biocViews": [ "AnnotationData", "Genetics", "GenomicScores", "Homo_sapiens" ], "Author": "Robert Castelo", "Maintainer": "Robert Castelo ", "source.ver": "src/contrib/MafDb.ExAC.r1.0.nonTCGA.hs37d5_3.7.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 726 }, "MafDb.gnomAD.r2.0.1.GRCh38": { "Package": "MafDb.gnomAD.r2.0.1.GRCh38", "Version": "3.7.0", "Depends": [ "R (>= 3.0.0)", "GenomicScores (>= 1.3.19)" ], "Imports": [ "utils", "S4Vectors", "IRanges", "GenomicRanges", "GenomeInfoDb", "BSgenome" ], "Suggests": [ "SNPlocs.Hsapiens.dbSNP149.GRCh38" ], "License": "Artistic-2.0", "MD5sum": "735178d5c746753c81acfb3023007ac2", "NeedsCompilation": "no", "Title": "Minor allele frequency data from gnomAD release 2.0.1 for GRCh38", "Description": "Store minor allele frequency data from the Genome Aggregation Database (gnomAD release 2.0.1) for the human genome version GRCh38.", "biocViews": [ "AnnotationData", "Genetics", "GenomicScores", "Homo_sapiens" ], "Author": "Robert Castelo", "Maintainer": "Robert Castelo ", "source.ver": "src/contrib/MafDb.gnomAD.r2.0.1.GRCh38_3.7.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 910 }, "MafDb.gnomAD.r2.0.1.hs37d5": { "Package": "MafDb.gnomAD.r2.0.1.hs37d5", "Version": "3.7.0", "Depends": [ "R (>= 3.0.0)", "GenomicScores (>= 1.3.19)" ], "Imports": [ "utils", "S4Vectors", "IRanges", "GenomicRanges", "GenomeInfoDb", "BSgenome" ], "Suggests": [ "SNPlocs.Hsapiens.dbSNP144.GRCh37" ], "License": "Artistic-2.0", "MD5sum": "0c2899fc24a9179d559d708f64e4aa36", "NeedsCompilation": "no", "Title": "Minor allele frequency data from gnomAD release 2.0.1 for hs37d5", "Description": "Store minor allele frequency data from the Genome Aggregation Database (gnomAD release 2.0.1) for the human genome version hs37d5.", "biocViews": [ "AnnotationData", "Genetics", "GenomicScores", "Homo_sapiens" ], "Author": "Robert Castelo", "Maintainer": "Robert Castelo ", "source.ver": "src/contrib/MafDb.gnomAD.r2.0.1.hs37d5_3.7.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 337 }, "MafDb.gnomADex.r2.0.1.GRCh38": { "Package": "MafDb.gnomADex.r2.0.1.GRCh38", "Version": "3.7.0", "Depends": [ "R (>= 3.0.0)", "GenomicScores (>= 1.3.19)" ], "Imports": [ "utils", "S4Vectors", "IRanges", "GenomicRanges", "GenomeInfoDb", "BSgenome" ], "Suggests": [ "SNPlocs.Hsapiens.dbSNP149.GRCh38" ], "License": "Artistic-2.0", "MD5sum": "95070dc7a5d707d63dbb6ae51ad0e68b", "NeedsCompilation": "no", "Title": "Minor allele frequency data from gnomAD exomes release 2.0.1 for GRCh38", "Description": "Store minor allele frequency data from the Genome Aggregation Database (gnomAD exomes release 2.0.1) for the human genome version GRCh38.", "biocViews": [ "AnnotationData", "Genetics", "GenomicScores", "Homo_sapiens" ], "Author": "Robert Castelo", "Maintainer": "Robert Castelo ", "source.ver": "src/contrib/MafDb.gnomADex.r2.0.1.GRCh38_3.7.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 916 }, "MafDb.gnomADex.r2.0.1.hs37d5": { "Package": "MafDb.gnomADex.r2.0.1.hs37d5", "Version": "3.7.0", "Depends": [ "R (>= 3.0.0)", "GenomicScores (>= 1.3.19)" ], "Imports": [ "utils", "S4Vectors", "IRanges", "GenomicRanges", "GenomeInfoDb", "BSgenome" ], "Suggests": [ "SNPlocs.Hsapiens.dbSNP144.GRCh37" ], "License": "Artistic-2.0", "MD5sum": "422d83c38ba09aed078d658469f72410", "NeedsCompilation": "no", "Title": "Minor allele frequency data from gnomAD exomes release 2.0.1 for hs37d5", "Description": "Store minor allele frequency data from the Genome Aggregation Database (gnomAD exomes release 2.0.1) for the human genome version hs37d5.", "biocViews": [ "AnnotationData", "Genetics", "GenomicScores", "Homo_sapiens" ], "Author": "Robert Castelo", "Maintainer": "Robert Castelo ", "source.ver": "src/contrib/MafDb.gnomADex.r2.0.1.hs37d5_3.7.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 726 }, "MafDb.TOPMed.freeze5.hg19": { "Package": "MafDb.TOPMed.freeze5.hg19", "Version": "3.7.1", "Depends": [ "R (>= 3.0.0)", "GenomicScores (>= 1.3.19)" ], "Imports": [ "utils", "S4Vectors", "IRanges", "GenomicRanges", "GenomeInfoDb", "BSgenome" ], "Suggests": [ "SNPlocs.Hsapiens.dbSNP144.GRCh37" ], "License": "Artistic-2.0", "MD5sum": "efa58223437a23aa77a4da3d0ae4aa90", "NeedsCompilation": "no", "Title": "Minor allele frequency data from TOPMed for hg19", "Description": "Store minor allele frequency data from NHLBI TOPMed for the human genome version hg19.", "biocViews": [ "AnnotationData", "Genetics", "GenomicScores", "Homo_sapiens" ], "Author": "Robert Castelo [aut, cre]", "Maintainer": "Robert Castelo ", "source.ver": "src/contrib/MafDb.TOPMed.freeze5.hg19_3.7.1.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 916 }, "MafDb.TOPMed.freeze5.hg38": { "Package": "MafDb.TOPMed.freeze5.hg38", "Version": "3.7.1", "Depends": [ "R (>= 3.0.0)", "GenomicScores (>= 1.3.19)" ], "Imports": [ "utils", "S4Vectors", "IRanges", "GenomicRanges", "GenomeInfoDb", "BSgenome" ], "Suggests": [ "SNPlocs.Hsapiens.dbSNP149.GRCh38" ], "License": "Artistic-2.0", "MD5sum": "9d47a5c4e2f94f243c426e4701f6b74a", "NeedsCompilation": "no", "Title": "Minor allele frequency data from TOPMed for hg38", "Description": "Store minor allele frequency data from NHLBI TOPMed for the human genome version hg38.", "biocViews": [ "AnnotationData", "Genetics", "GenomicScores", "Homo_sapiens" ], "Author": "Robert Castelo [aut, cre]", "Maintainer": "Robert Castelo ", "source.ver": "src/contrib/MafDb.TOPMed.freeze5.hg38_3.7.1.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 906 }, "maizecdf": { "Package": "maizecdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "f9dec9e46688d96daf1e07d4e815afb4", "NeedsCompilation": "no", "Title": "maizecdf", "Description": "A package containing an environment representing the Maize.cdf file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Zea_mays", "cdf", "maize" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/maizecdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 359 }, "maizeprobe": { "Package": "maizeprobe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "ef7ba47de2346b3552621263399c05d1", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type maize", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Maize\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Zea_mays", "maize", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/maizeprobe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 726 }, "malaria.db0": { "Package": "malaria.db0", "Version": "3.6.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.41.4)" ], "Imports": [ "methods", "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "4dee95025d58358b43df233ea5f40441", "NeedsCompilation": "no", "Title": "Base Level Annotation databases for malaria", "Description": "Base annotation databases for malaria, intended ONLY to be used by AnnotationDbi to produce regular annotation packages.", "biocViews": [ "AnnotationData", "Plasmodium_falciparum", "db0" ], "Author": "Bioconductor Core Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Plasmodium falciparum", "source.ver": "src/contrib/malaria.db0_3.6.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 779 }, "medicagocdf": { "Package": "medicagocdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "1fbb2e4c070344d18e65f1b3993867db", "NeedsCompilation": "no", "Title": "medicagocdf", "Description": "A package containing an environment representing the Medicago.cdf file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Medicago_trunculata", "cdf", "medicago" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/medicagocdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "medicagoprobe": { "Package": "medicagoprobe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "83b9887ad2ed26c704b0ca7115e5838d", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type medicago", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Medicago\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Medicago_trunculata", "medicago", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/medicagoprobe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 824 }, "MeSH.Aca.eg.db": { "Package": "MeSH.Aca.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "21b5132616c994e7139b72dc8ed245ea", "NeedsCompilation": "no", "Title": "Mapping table for Anolis carolinensis Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Anolis carolinensis", "source.ver": "src/contrib/MeSH.Aca.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 107, "dependsOnMe": [ "meshr" ] }, "MeSH.Aga.PEST.eg.db": { "Package": "MeSH.Aga.PEST.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "c299acb17502d95fd401fdd1f0aa5c46", "NeedsCompilation": "no", "Title": "Mapping table for Anopheles gambiae str. PEST Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Anopheles gambiae str. PEST", "source.ver": "src/contrib/MeSH.Aga.PEST.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 779 }, "MeSH.Ame.eg.db": { "Package": "MeSH.Ame.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "ebe786651afd27b33379aae9dd2a30ed", "NeedsCompilation": "no", "Title": "Mapping table for Ailuropoda melanoleuca Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Ailuropoda melanoleuca", "source.ver": "src/contrib/MeSH.Ame.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 875 }, "MeSH.Aml.eg.db": { "Package": "MeSH.Aml.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "03c437c41812b07221e35d4d092a8b33", "NeedsCompilation": "no", "Title": "Mapping table for Apis mellifera Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Apis mellifera", "source.ver": "src/contrib/MeSH.Aml.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 726 }, "MeSH.Ana.eg.db": { "Package": "MeSH.Ana.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "0203968fcdf0f3f6b1f0b11455a14111", "NeedsCompilation": "no", "Title": "Mapping table for Filamentos cyanobacteria Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Filamentos cyanobacteria", "source.ver": "src/contrib/MeSH.Ana.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 824 }, "MeSH.Ani.FGSC.eg.db": { "Package": "MeSH.Ani.FGSC.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "654e10797eb5b3050391768065b5eada", "NeedsCompilation": "no", "Title": "Mapping table for Aspergillus nidulans FGSC A4 Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Aspergillus nidulans FGSC A4", "source.ver": "src/contrib/MeSH.Ani.FGSC.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 875 }, "MeSH.AOR.db": { "Package": "MeSH.AOR.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "b17d3539e442ba2bdccc73a6de8a4ae4", "NeedsCompilation": "no", "Title": "A set of annotation maps describing the entire MeSH", "Description": "A set of AOR (ancestor-offspring relationship) in MeSH.", "biocViews": [ "AnnotationData", "FunctionalAnnotation", "MeSHDb" ], "Author": "Itoshi Nikaido, Koki Tsuyuzaki, Gota Morota", "Maintainer": "Koki Tsuyuzaki ", "source.ver": "src/contrib/MeSH.AOR.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 100, "dependsOnMe": [ "meshr" ] }, "MeSH.Ath.eg.db": { "Package": "MeSH.Ath.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "ecbe6ab94387384a453e3c640b2b81a7", "NeedsCompilation": "no", "Title": "Mapping table for Arabidopsis thaliana Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Arabidopsis thaliana", "source.ver": "src/contrib/MeSH.Ath.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 779 }, "MeSH.Bfl.eg.db": { "Package": "MeSH.Bfl.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "fe3e9f51aa70781e165772a3c9a221bd", "NeedsCompilation": "no", "Title": "Mapping table for Branchiostoma floridae Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Branchiostoma floridae", "source.ver": "src/contrib/MeSH.Bfl.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 824 }, "MeSH.Bsu.168.eg.db": { "Package": "MeSH.Bsu.168.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "7e9be876d0ebbcc85735469669ac40b7", "NeedsCompilation": "no", "Title": "Mapping table for Bacillus subtilis subsp. spizizenii str. 168 Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Bacillus subtilis subsp. spizizenii str. 168", "source.ver": "src/contrib/MeSH.Bsu.168.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 110, "dependsOnMe": [ "meshr" ] }, "MeSH.Bta.eg.db": { "Package": "MeSH.Bta.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "4996653be2e20e8211270aabc305e547", "NeedsCompilation": "no", "Title": "Mapping table for Bos taurus Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Bos taurus", "source.ver": "src/contrib/MeSH.Bta.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 396 }, "MeSH.Cal.SC5314.eg.db": { "Package": "MeSH.Cal.SC5314.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "4306cddd7d90f671265645b4c9c41cb5", "NeedsCompilation": "no", "Title": "Mapping table for Candida albicans SC5314 Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Candida albicans SC5314", "source.ver": "src/contrib/MeSH.Cal.SC5314.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 779 }, "MeSH.Cbr.eg.db": { "Package": "MeSH.Cbr.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "ca7b48ca7ba34ecd08a9af41bc94f293", "NeedsCompilation": "no", "Title": "Mapping table for Caenorhabditis briggsae Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Caenorhabditis briggsae", "source.ver": "src/contrib/MeSH.Cbr.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 875 }, "MeSH.Cel.eg.db": { "Package": "MeSH.Cel.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "9468de7a9d08e8d9d6b35de68ff7e2dd", "NeedsCompilation": "no", "Title": "Mapping table for Caenorhabditis elegans Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Caenorhabditis elegans", "source.ver": "src/contrib/MeSH.Cel.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 319, "suggestsMe": [ "meshes" ] }, "MeSH.Cfa.eg.db": { "Package": "MeSH.Cfa.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "9e35d0da4c714d59b3eead5edf2a28b8", "NeedsCompilation": "no", "Title": "Mapping table for Canis familiaris Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Canis familiaris", "source.ver": "src/contrib/MeSH.Cfa.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 824 }, "MeSH.Cin.eg.db": { "Package": "MeSH.Cin.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "36552ce9c1277ac497da951d7b207365", "NeedsCompilation": "no", "Title": "Mapping table for Ciona intestinalis Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Ciona intestinalis", "source.ver": "src/contrib/MeSH.Cin.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 875 }, "MeSH.Cja.eg.db": { "Package": "MeSH.Cja.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "20ce175722c44ed9da598323135e7490", "NeedsCompilation": "no", "Title": "Mapping table for Callithrix jacchus Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Callithrix jacchus", "source.ver": "src/contrib/MeSH.Cja.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 824 }, "MeSH.Cpo.eg.db": { "Package": "MeSH.Cpo.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "84a159511e14e7cf4a67d24fe9ef2a97", "NeedsCompilation": "no", "Title": "Mapping table for Cavia porcellus Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Cavia porcellus", "source.ver": "src/contrib/MeSH.Cpo.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 875 }, "MeSH.Cre.eg.db": { "Package": "MeSH.Cre.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "ee17cfee3457d8d3b6f66742e5876ff0", "NeedsCompilation": "no", "Title": "Mapping table for Caenorhabditis remani Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Caenorhabditis remani", "source.ver": "src/contrib/MeSH.Cre.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 824 }, "MeSH.Dan.eg.db": { "Package": "MeSH.Dan.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "85e37b89890d1a4a719c08824adec64f", "NeedsCompilation": "no", "Title": "Mapping table for Drosophila ananassae Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Drosophila ananassae", "source.ver": "src/contrib/MeSH.Dan.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 875 }, "MeSH.db": { "Package": "MeSH.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "f47e271183018989338e75970620ce41", "NeedsCompilation": "no", "Title": "A set of annotation maps describing the entire MeSH", "Description": "A set of annotation maps describing the entire MeSH assembled using data from MeSH.", "biocViews": [ "AnnotationData", "FunctionalAnnotation", "MeSHDb" ], "Author": "Itoshi Nikaido, Koki Tsuyuzaki, Gota Morota", "Maintainer": "Koki Tsuyuzaki ", "source.ver": "src/contrib/MeSH.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": true, "hasINSTALL": false, "hasLICENSE": false, "Rank": 77, "dependsOnMe": [ "meshr" ], "importsMe": [ "meshes" ] }, "MeSH.Dda.3937.eg.db": { "Package": "MeSH.Dda.3937.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "0c19d784b189cafedd29eefd550e4d27", "NeedsCompilation": "no", "Title": "Mapping table for Dickeya dadantii 3937 Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Dickeya dadantii 3937", "source.ver": "src/contrib/MeSH.Dda.3937.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 906 }, "MeSH.Ddi.AX4.eg.db": { "Package": "MeSH.Ddi.AX4.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "eff75d7e8702459640bbe680cd64b4a0", "NeedsCompilation": "no", "Title": "Mapping table for Dictyostelium discoideum AX4 Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Dictyostelium discoideum AX4", "source.ver": "src/contrib/MeSH.Ddi.AX4.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 824 }, "MeSH.Der.eg.db": { "Package": "MeSH.Der.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "2efcc18cbbd487caaebf47c8da80a553", "NeedsCompilation": "no", "Title": "Mapping table for Drosophila eracta Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Drosophila eracta", "source.ver": "src/contrib/MeSH.Der.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 875 }, "MeSH.Dgr.eg.db": { "Package": "MeSH.Dgr.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "845c6a28ac573d5db2e11e84feadb1d2", "NeedsCompilation": "no", "Title": "Mapping table for Drosophila grimshawi Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Drosophila grimshawi", "source.ver": "src/contrib/MeSH.Dgr.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 875 }, "MeSH.Dme.eg.db": { "Package": "MeSH.Dme.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "f339f7e8dc9d3620e33a4ff6a87f6d8b", "NeedsCompilation": "no", "Title": "Mapping table for Drosophila melanogaster Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Drosophila melanogaster", "source.ver": "src/contrib/MeSH.Dme.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 875 }, "MeSH.Dmo.eg.db": { "Package": "MeSH.Dmo.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "6b0a72d42982d31fed746127847fd0d8", "NeedsCompilation": "no", "Title": "Mapping table for Drosophila mojavensis Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Drosophila mojavensis", "source.ver": "src/contrib/MeSH.Dmo.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 824 }, "MeSH.Dpe.eg.db": { "Package": "MeSH.Dpe.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "68bfabbd0bd82ea967b20194a63648ca", "NeedsCompilation": "no", "Title": "Mapping table for Drosophila persimilis Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Drosophila persimilis", "source.ver": "src/contrib/MeSH.Dpe.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 824 }, "MeSH.Dre.eg.db": { "Package": "MeSH.Dre.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "93a92986c6807c046841feb68fcb4090", "NeedsCompilation": "no", "Title": "Mapping table for Danio rerio Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Danio rerio", "source.ver": "src/contrib/MeSH.Dre.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 875 }, "MeSH.Dse.eg.db": { "Package": "MeSH.Dse.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "a353e533823133ef0d4b3ee7da9c4a75", "NeedsCompilation": "no", "Title": "Mapping table for Drosophila sechellia Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Drosophila sechellia", "source.ver": "src/contrib/MeSH.Dse.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 875 }, "MeSH.Dsi.eg.db": { "Package": "MeSH.Dsi.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "ac716c83108bf0883bd53d88d8c37e11", "NeedsCompilation": "no", "Title": "Mapping table for Drosophila simulans Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Drosophila simulans", "source.ver": "src/contrib/MeSH.Dsi.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 779 }, "MeSH.Dvi.eg.db": { "Package": "MeSH.Dvi.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "ca0b8104537bcccc7063467c0a266409", "NeedsCompilation": "no", "Title": "Mapping table for Drosophila virllis Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Drosophila virllis", "source.ver": "src/contrib/MeSH.Dvi.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 824 }, "MeSH.Dya.eg.db": { "Package": "MeSH.Dya.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "b5db3a83d827715b0f55370840c23143", "NeedsCompilation": "no", "Title": "Mapping table for Drosophila yakuba Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Drosophila yakuba", "source.ver": "src/contrib/MeSH.Dya.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 824 }, "MeSH.Eco.55989.eg.db": { "Package": "MeSH.Eco.55989.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "dfe1d4210d70370bc15141f6039450b6", "NeedsCompilation": "no", "Title": "Mapping table for Escherichia coli 55989 Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Escherichia coli 55989", "source.ver": "src/contrib/MeSH.Eco.55989.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 824 }, "MeSH.Eco.ED1a.eg.db": { "Package": "MeSH.Eco.ED1a.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "97ee6c536509c9e853e5de435d2b2343", "NeedsCompilation": "no", "Title": "Mapping table for Escherichia coli ED1a Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Escherichia coli ED1a", "source.ver": "src/contrib/MeSH.Eco.ED1a.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 875 }, "MeSH.Eco.IAI39.eg.db": { "Package": "MeSH.Eco.IAI39.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "7cc7fa59de3b7d2445dadb33bf7ccd19", "NeedsCompilation": "no", "Title": "Mapping table for Escherichia coli IAI39 Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Escherichia coli IAI39", "source.ver": "src/contrib/MeSH.Eco.IAI39.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 875 }, "MeSH.Eco.K12.MG1655.eg.db": { "Package": "MeSH.Eco.K12.MG1655.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "e227947750d6612fdaae025d2475a55a", "NeedsCompilation": "no", "Title": "Mapping table for Escherichia coli str K-12 substr. MG1655 Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Escherichia coli str K-12 substr. MG1655", "source.ver": "src/contrib/MeSH.Eco.K12.MG1655.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 779 }, "MeSH.Eco.O157.H7.Sakai.eg.db": { "Package": "MeSH.Eco.O157.H7.Sakai.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "50aa37783aa58fc93ff98c386713f320", "NeedsCompilation": "no", "Title": "Mapping table for Escherichia coli O157:H7 Sakai Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Escherichia coli O157:H7 Sakai", "source.ver": "src/contrib/MeSH.Eco.O157.H7.Sakai.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 875 }, "MeSH.Eco.UMN026.eg.db": { "Package": "MeSH.Eco.UMN026.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "3d09ccc3351c282b22d014d9530813c6", "NeedsCompilation": "no", "Title": "Mapping table for Escherichia coli UMN026 Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Escherichia coli UMN026", "source.ver": "src/contrib/MeSH.Eco.UMN026.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 875 }, "MeSH.Eqc.eg.db": { "Package": "MeSH.Eqc.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "472dafd6d131b6f4e8a5e01f2ab4429c", "NeedsCompilation": "no", "Title": "Mapping table for Equus caballus Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Equus caballus", "source.ver": "src/contrib/MeSH.Eqc.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 875 }, "MeSH.Gga.eg.db": { "Package": "MeSH.Gga.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "77c074a73c106842b96c67cfba80cd39", "NeedsCompilation": "no", "Title": "Mapping table for Gallus gallus Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Gallus gallus", "source.ver": "src/contrib/MeSH.Gga.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 824 }, "MeSH.Gma.eg.db": { "Package": "MeSH.Gma.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "e9e34932137ee2679ff40607d96d73ab", "NeedsCompilation": "no", "Title": "Mapping table for Glycine max Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Glycine max", "source.ver": "src/contrib/MeSH.Gma.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 779 }, "MeSH.Hsa.eg.db": { "Package": "MeSH.Hsa.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "48515fd097b48564f7b26bc3b1675805", "NeedsCompilation": "no", "Title": "Mapping table for Homo sapiens Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Homo sapiens", "source.ver": "src/contrib/MeSH.Hsa.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 90, "suggestsMe": [ "meshes" ], "dependsOnMe": [ "meshr" ] }, "MeSH.Laf.eg.db": { "Package": "MeSH.Laf.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "cf33fd7167c23c7a6e4673f7837a28d4", "NeedsCompilation": "no", "Title": "Mapping table for Loxodonta africana Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Loxodonta africana", "source.ver": "src/contrib/MeSH.Laf.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 824 }, "MeSH.Lma.eg.db": { "Package": "MeSH.Lma.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "ef64cd4961ba007e283bc43c0043cd5c", "NeedsCompilation": "no", "Title": "Mapping table for Leishmania major strain Friedlin Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Leishmania major strain Friedlin", "source.ver": "src/contrib/MeSH.Lma.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 875 }, "MeSH.Mdo.eg.db": { "Package": "MeSH.Mdo.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "7d5b2aa459f956fa7b749d9bd9192734", "NeedsCompilation": "no", "Title": "Mapping table for Monodelphis domestica Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Monodelphis domestica", "source.ver": "src/contrib/MeSH.Mdo.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 824 }, "MeSH.Mes.eg.db": { "Package": "MeSH.Mes.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "6dffd7f62c886a7c7f55569283b9d9df", "NeedsCompilation": "no", "Title": "Mapping table for NA Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "NA", "source.ver": "src/contrib/MeSH.Mes.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 875 }, "MeSH.Mga.eg.db": { "Package": "MeSH.Mga.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "deff6c2b53a4beab65a3eb382180cc12", "NeedsCompilation": "no", "Title": "Mapping table for Meleagris gallopavo Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Meleagris gallopavo", "source.ver": "src/contrib/MeSH.Mga.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 824 }, "MeSH.Miy.eg.db": { "Package": "MeSH.Miy.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "a8195086aaeb82d302cdba320650954e", "NeedsCompilation": "no", "Title": "Mapping table for Lotus japonicus Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Lotus japonicus", "source.ver": "src/contrib/MeSH.Miy.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 875 }, "MeSH.Mml.eg.db": { "Package": "MeSH.Mml.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "b8196af6d7834fc26b5030205df93944", "NeedsCompilation": "no", "Title": "Mapping table for Macaca mulatta Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Macaca mulatta", "source.ver": "src/contrib/MeSH.Mml.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 779 }, "MeSH.Mmu.eg.db": { "Package": "MeSH.Mmu.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "701c4d187256e5743dcc485d836dc091", "NeedsCompilation": "no", "Title": "Mapping table for Mus musculus Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Mus musculus", "source.ver": "src/contrib/MeSH.Mmu.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 529 }, "MeSH.Mtr.eg.db": { "Package": "MeSH.Mtr.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "6b7d41e83c9c6a0477d2a06f7128b611", "NeedsCompilation": "no", "Title": "Mapping table for Medicago truncatula Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Medicago truncatula", "source.ver": "src/contrib/MeSH.Mtr.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 906 }, "MeSH.Nle.eg.db": { "Package": "MeSH.Nle.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "77226c8f9651f1051881ce8bace2e8cf", "NeedsCompilation": "no", "Title": "Mapping table for Normascus leucogenys Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Normascus leucogenys", "source.ver": "src/contrib/MeSH.Nle.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 875 }, "MeSH.Oan.eg.db": { "Package": "MeSH.Oan.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "1022329ea7d4ef751c666d1ef8dcbbef", "NeedsCompilation": "no", "Title": "Mapping table for Ornithorhynchus anatinus Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Ornithorhynchus anatinus", "source.ver": "src/contrib/MeSH.Oan.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 824 }, "MeSH.Ocu.eg.db": { "Package": "MeSH.Ocu.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "9e64560d10f3ff52df88c36d92c9fa39", "NeedsCompilation": "no", "Title": "Mapping table for Oryctolagus cuniculus Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Oryctolagus cuniculus", "source.ver": "src/contrib/MeSH.Ocu.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 779 }, "MeSH.Oni.eg.db": { "Package": "MeSH.Oni.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "a91d02d1a75532017f19ad433456865f", "NeedsCompilation": "no", "Title": "Mapping table for Oreochromis niloticus Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Oreochromis niloticus", "source.ver": "src/contrib/MeSH.Oni.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 824 }, "MeSH.Osa.eg.db": { "Package": "MeSH.Osa.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "49b2943324be501bf026d638cc30502f", "NeedsCompilation": "no", "Title": "Mapping table for Oryza sativa Japonica Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Oryza sativa Japonica", "source.ver": "src/contrib/MeSH.Osa.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 529 }, "MeSH.Pab.eg.db": { "Package": "MeSH.Pab.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "26af7b01f74c5518b6878be2fd0473c8", "NeedsCompilation": "no", "Title": "Mapping table for Pongo abelii Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Pongo abelii", "source.ver": "src/contrib/MeSH.Pab.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 875 }, "MeSH.Pae.PAO1.eg.db": { "Package": "MeSH.Pae.PAO1.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "3b18d718d295b977a49de8ff3deb7323", "NeedsCompilation": "no", "Title": "Mapping table for Pseudomonas aeruginosa PAO1 Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Pseudomonas aeruginosa PAO1", "source.ver": "src/contrib/MeSH.Pae.PAO1.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 824 }, "MeSH.PCR.db": { "Package": "MeSH.PCR.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "407e05b567e29d748e3dde5df4f7ead6", "NeedsCompilation": "no", "Title": "A set of annotation maps describing the entire MeSH", "Description": "A set of PCR (parent-child relationship) in MeSH.", "biocViews": [ "AnnotationData", "FunctionalAnnotation", "MeSHDb" ], "Author": "Itoshi Nikaido, Koki Tsuyuzaki, Gota Morota", "Maintainer": "Koki Tsuyuzaki ", "source.ver": "src/contrib/MeSH.PCR.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 100, "dependsOnMe": [ "meshr" ] }, "MeSH.Pfa.3D7.eg.db": { "Package": "MeSH.Pfa.3D7.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "8581c56a623ce1e6b16ffc2fa955e640", "NeedsCompilation": "no", "Title": "Mapping table for Plasmodium falciparum 3D7 Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Plasmodium falciparum 3D7", "source.ver": "src/contrib/MeSH.Pfa.3D7.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 779 }, "MeSH.Pto.eg.db": { "Package": "MeSH.Pto.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "33880c9eb483d06ab9237fef35cb8666", "NeedsCompilation": "no", "Title": "Mapping table for Pan troglodytes Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Pan troglodytes", "source.ver": "src/contrib/MeSH.Pto.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 875 }, "MeSH.Ptr.eg.db": { "Package": "MeSH.Ptr.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "f2e67639483a06d4676c1453398919cf", "NeedsCompilation": "no", "Title": "Mapping table for Populus trichocarpa Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Populus trichocarpa", "source.ver": "src/contrib/MeSH.Ptr.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 779 }, "MeSH.Rno.eg.db": { "Package": "MeSH.Rno.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "a9733ff63be57dd574193a28c94de6af", "NeedsCompilation": "no", "Title": "Mapping table for Rattus norvegicus Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Rattus norvegicus", "source.ver": "src/contrib/MeSH.Rno.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 824 }, "MeSH.Sce.S288c.eg.db": { "Package": "MeSH.Sce.S288c.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "f7cc0912eee22f2a3db869371b171904", "NeedsCompilation": "no", "Title": "Mapping table for Saccharomyces cerevisiae S288c Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Saccharomyces cerevisiae S288c", "source.ver": "src/contrib/MeSH.Sce.S288c.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 824 }, "MeSH.Sco.A32.eg.db": { "Package": "MeSH.Sco.A32.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "51ab6b67532d339979930e46f4df1710", "NeedsCompilation": "no", "Title": "Mapping table for Streptomyces coelicolor A3(2) Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Streptomyces coelicolor A3(2)", "source.ver": "src/contrib/MeSH.Sco.A32.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 824 }, "MeSH.Sil.eg.db": { "Package": "MeSH.Sil.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "1eb168870644e68ec02c96ab695a2ac1", "NeedsCompilation": "no", "Title": "Mapping table for Bombyx mori Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Bombyx mori", "source.ver": "src/contrib/MeSH.Sil.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 824 }, "MeSH.Spu.eg.db": { "Package": "MeSH.Spu.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "e6b20515ff8ade9b388e6a4329f95edf", "NeedsCompilation": "no", "Title": "Mapping table for Strongylocentrotus purpuratus Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Strongylocentrotus purpuratus", "source.ver": "src/contrib/MeSH.Spu.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 875 }, "MeSH.Ssc.eg.db": { "Package": "MeSH.Ssc.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "f65d2acf690b77834f8eca35b26324dd", "NeedsCompilation": "no", "Title": "Mapping table for Sus scrofa Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Sus scrofa", "source.ver": "src/contrib/MeSH.Ssc.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 779 }, "MeSH.Syn.eg.db": { "Package": "MeSH.Syn.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "5b71f933cd1ce37192690c6cce5c5d30", "NeedsCompilation": "no", "Title": "Mapping table for Cyanobacteria Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Cyanobacteria", "source.ver": "src/contrib/MeSH.Syn.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 107, "dependsOnMe": [ "meshr" ] }, "MeSH.Tbr.9274.eg.db": { "Package": "MeSH.Tbr.9274.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "f6dfe19a548ad2e83a9c3a502d9575be", "NeedsCompilation": "no", "Title": "Mapping table for Trypanosoma brucei brucei strain 927_4 GUTat10.1 Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Trypanosoma brucei brucei strain 927_4 GUTat10.1", "source.ver": "src/contrib/MeSH.Tbr.9274.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 824 }, "MeSH.Tgo.ME49.eg.db": { "Package": "MeSH.Tgo.ME49.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "373408ff97cf0625529381a94267d40a", "NeedsCompilation": "no", "Title": "Mapping table for Toxoplasma gondii ME49 Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Toxoplasma gondii ME49", "source.ver": "src/contrib/MeSH.Tgo.ME49.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 875 }, "MeSH.Tgu.eg.db": { "Package": "MeSH.Tgu.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "ab3af607bd47fe79a0b1de7732df7789", "NeedsCompilation": "no", "Title": "Mapping table for Taeniopygia guttata Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Taeniopygia guttata", "source.ver": "src/contrib/MeSH.Tgu.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 875 }, "MeSH.Vvi.eg.db": { "Package": "MeSH.Vvi.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "e90d8fbc7063517c8527c575e8e727e4", "NeedsCompilation": "no", "Title": "Mapping table for Vitis vinifera Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Vitis vinifera", "source.ver": "src/contrib/MeSH.Vvi.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 824 }, "MeSH.Xla.eg.db": { "Package": "MeSH.Xla.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "97653fc9c7fb6564ecd5a3c930343137", "NeedsCompilation": "no", "Title": "Mapping table for Xenopus laevis Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Xenopus laevis", "source.ver": "src/contrib/MeSH.Xla.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 824 }, "MeSH.Xtr.eg.db": { "Package": "MeSH.Xtr.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "f84c2949011dda9aa57f965b712597e2", "NeedsCompilation": "no", "Title": "Mapping table for Xenopus tropicalis Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Xenopus tropicalis", "source.ver": "src/contrib/MeSH.Xtr.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 779 }, "MeSH.Zma.eg.db": { "Package": "MeSH.Zma.eg.db", "Version": "1.10.0", "Depends": [ "R (>= 3.0.1)", "MeSHDbi" ], "Suggests": [ "RUnit", "BiocGenerics" ], "License": "Artistic-2.0", "MD5sum": "33374ccd81e76a011d58e2ce4db41ca3", "NeedsCompilation": "no", "Title": "Mapping table for Zea mays Gene ID to MeSH", "Description": "Entrez Gene ID to MeSH ID table.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure", "MeSHDb" ], "Author": "Itoshi NIKAIDO, Koki Tsuyuzaki, Gota Morota, Takeru Nakazato", "Maintainer": "Koki Tsuyuzaki ", "organism": "Zea mays", "source.ver": "src/contrib/MeSH.Zma.eg.db_1.10.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 726 }, "mgu74a.db": { "Package": "mgu74a.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Mm.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "b746929f272a811061cf03040ec5ea3b", "NeedsCompilation": "no", "Title": "Affymetrix Murine Genome U74v2 annotation data (chip mgu74a)", "Description": "Affymetrix Murine Genome U74v2 annotation data (chip mgu74a) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Mus_musculus", "mgu74a" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Mus musculus", "manufacturer": "Affymetrix", "source.ver": "src/contrib/mgu74a.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 337 }, "mgu74acdf": { "Package": "mgu74acdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "ed6e86398e51c7b0ddca4431797ecbc0", "NeedsCompilation": "no", "Title": "mgu74acdf", "Description": "A package containing an environment representing the MG_U74A.cdf file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "cdf", "mgu74a" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/mgu74acdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "mgu74aprobe": { "Package": "mgu74aprobe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "7fea6d44856203e6293e0cd9fe1ad066", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type mgu74a", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was MG-U74A\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "mgu74a", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/mgu74aprobe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 824 }, "mgu74av2.db": { "Package": "mgu74av2.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Mm.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "ca637dece483fe0a0f752e4fa013d389", "NeedsCompilation": "no", "Title": "Affymetrix Murine Genome U74v2 annotation data (chip mgu74av2)", "Description": "Affymetrix Murine Genome U74v2 annotation data (chip mgu74av2) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Mus_musculus", "mgu74av2" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Mus musculus", "manufacturer": "Affymetrix", "source.ver": "src/contrib/mgu74av2.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 151 }, "mgu74av2cdf": { "Package": "mgu74av2cdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "35e2abb9fbfd68d90dc32a2faae00c95", "NeedsCompilation": "no", "Title": "mgu74av2cdf", "Description": "A package containing an environment representing the MG_U74Av2.CDF file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "cdf", "mgu74av2" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/mgu74av2cdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 195 }, "mgu74av2probe": { "Package": "mgu74av2probe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "ac540b0e26b14a411740233b02d3e11c", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type mgu74av2", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was MG-U74Av2\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "mgu74av2", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/mgu74av2probe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "mgu74b.db": { "Package": "mgu74b.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Mm.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "9d019b194a64ec8c915514019896708e", "NeedsCompilation": "no", "Title": "Affymetrix Murine Genome U74v2 annotation data (chip mgu74b)", "Description": "Affymetrix Murine Genome U74v2 annotation data (chip mgu74b) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Mus_musculus", "mgu74b" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Mus musculus", "manufacturer": "Affymetrix", "source.ver": "src/contrib/mgu74b.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 396 }, "mgu74bcdf": { "Package": "mgu74bcdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "a1f0f98f29d34a421622447252113e1e", "NeedsCompilation": "no", "Title": "mgu74bcdf", "Description": "A package containing an environment representing the MG_U74B.cdf file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "cdf", "mgu74b" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/mgu74bcdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "mgu74bprobe": { "Package": "mgu74bprobe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "224d606e6fc87592d387dbaabe5cd353", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type mgu74b", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was MG-U74B\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "mgu74b", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/mgu74bprobe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 726 }, "mgu74bv2.db": { "Package": "mgu74bv2.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Mm.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "dfc729955539aa0a2a852745a515d413", "NeedsCompilation": "no", "Title": "Affymetrix Murine Genome U74v2 annotation data (chip mgu74bv2)", "Description": "Affymetrix Murine Genome U74v2 annotation data (chip mgu74bv2) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Mus_musculus", "mgu74bv2" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Mus musculus", "manufacturer": "Affymetrix", "source.ver": "src/contrib/mgu74bv2.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 396 }, "mgu74bv2cdf": { "Package": "mgu74bv2cdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "45c48d11af03633dc10f8682b7ad74c5", "NeedsCompilation": "no", "Title": "mgu74bv2cdf", "Description": "A package containing an environment representing the MG_U74Bv2.CDF file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "cdf", "mgu74bv2" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/mgu74bv2cdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 359 }, "mgu74bv2probe": { "Package": "mgu74bv2probe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "f6a12f88ea3c43a3e885c7e9b3fd03d2", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type mgu74bv2", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was MG-U74Bv2\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "mgu74bv2", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/mgu74bv2probe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 779 }, "mgu74c.db": { "Package": "mgu74c.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Mm.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "a92c9ac08ce2f543b016268948178776", "NeedsCompilation": "no", "Title": "Affymetrix Murine Genome U74v2 annotation data (chip mgu74c)", "Description": "Affymetrix Murine Genome U74v2 annotation data (chip mgu74c) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Mus_musculus", "mgu74c" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Mus musculus", "manufacturer": "Affymetrix", "source.ver": "src/contrib/mgu74c.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "mgu74ccdf": { "Package": "mgu74ccdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "172e626b0e3072edc65c4efff35fe998", "NeedsCompilation": "no", "Title": "mgu74ccdf", "Description": "A package containing an environment representing the MG_U74C.cdf file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "cdf", "mgu74c" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/mgu74ccdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 529 }, "mgu74cprobe": { "Package": "mgu74cprobe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "186992992708f0071fd552ef92b9e25c", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type mgu74c", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was MG-U74C\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "mgu74c", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/mgu74cprobe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 726 }, "mgu74cv2.db": { "Package": "mgu74cv2.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Mm.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "3f9ebd44f6dc4b23c009afa95afeb638", "NeedsCompilation": "no", "Title": "Affymetrix Murine Genome U74v2 annotation data (chip mgu74cv2)", "Description": "Affymetrix Murine Genome U74v2 annotation data (chip mgu74cv2) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Mus_musculus", "mgu74cv2" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Mus musculus", "manufacturer": "Affymetrix", "source.ver": "src/contrib/mgu74cv2.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 396 }, "mgu74cv2cdf": { "Package": "mgu74cv2cdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "9ef62b4b28f97770859db24393a07ed5", "NeedsCompilation": "no", "Title": "mgu74cv2cdf", "Description": "A package containing an environment representing the MG_U74Cv2.CDF file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "cdf", "mgu74cv2" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/mgu74cv2cdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 529 }, "mgu74cv2probe": { "Package": "mgu74cv2probe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "0373496c817a1c1a153114047cfa7c5b", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type mgu74cv2", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was MG-U74Cv2\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "mgu74cv2", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/mgu74cv2probe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 779 }, "mguatlas5k.db": { "Package": "mguatlas5k.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Mm.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "826093fe7228c08962aff36ad89af28e", "NeedsCompilation": "no", "Title": "Clontech BD Atlas Long Oligos Mouse 5K annotation data (chip mguatlas5k)", "Description": "Clontech BD Atlas Long Oligos Mouse 5K annotation data (chip mguatlas5k) assembled using data from public repositories", "biocViews": [ "AnnotationData", "ChipDb", "ClontechChip", "Mus_musculus", "mguatlas5k" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Mus musculus", "manufacturer": "Clontech", "source.ver": "src/contrib/mguatlas5k.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 726 }, "mgug4104a.db": { "Package": "mgug4104a.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Mm.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "7b1cef094a226257cd657ed8d61e9ef1", "NeedsCompilation": "no", "Title": "Agilent annotation data (chip mgug4104a)", "Description": "Agilent annotation data (chip mgug4104a) assembled using data from public repositories", "biocViews": [ "AgilentChip", "AnnotationData", "ChipDb", "Mus_musculus", "mgug4104a" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Mus musculus", "manufacturer": "Agilent", "source.ver": "src/contrib/mgug4104a.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 359, "suggestsMe": [ "gCMAPWeb" ] }, "mgug4120a.db": { "Package": "mgug4120a.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Mm.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "bb57e8b2efe3d038ec2a0ace0313a4e7", "NeedsCompilation": "no", "Title": "Agilent annotation data (chip mgug4120a)", "Description": "Agilent annotation data (chip mgug4120a) assembled using data from public repositories", "biocViews": [ "AgilentChip", "AnnotationData", "ChipDb", "Mus_musculus", "mgug4120a" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Mus musculus", "manufacturer": "Agilent", "source.ver": "src/contrib/mgug4120a.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 591 }, "mgug4121a.db": { "Package": "mgug4121a.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Mm.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "6b5cc321d5175356c383b91e30e120b7", "NeedsCompilation": "no", "Title": "Agilent Mouse annotation data (chip mgug4121a)", "Description": "Agilent Mouse annotation data (chip mgug4121a) assembled using data from public repositories", "biocViews": [ "AgilentChip", "AnnotationData", "ChipDb", "Mus_musculus", "mgug4121a" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Mus musculus", "manufacturer": "Agilent", "source.ver": "src/contrib/mgug4121a.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 529 }, "mgug4122a.db": { "Package": "mgug4122a.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Mm.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "5fcdce909ac1c0ccbf06bf6411f6fe52", "NeedsCompilation": "no", "Title": "Agilent \"Mouse Genome, Whole\" annotation data (chip mgug4122a)", "Description": "Agilent \"Mouse Genome, Whole\" annotation data (chip mgug4122a) assembled using data from public repositories", "biocViews": [ "AgilentChip", "AnnotationData", "ChipDb", "Mus_musculus", "mgug4122a" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Mus musculus", "manufacturer": "Agilent", "source.ver": "src/contrib/mgug4122a.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 261 }, "mi16cod.db": { "Package": "mi16cod.db", "Version": "3.4.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.31.18)", "org.Mm.eg.db (>= 3.2.1)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "f3a8e6f45ce5c298c1b1c5b32bf2630c", "NeedsCompilation": "no", "Title": "Codelink Mouse Inflammation 16 Bioarray annotation data (chip mi16cod)", "Description": "Codelink Mouse Inflammation 16 Bioarray annotation data (chip mi16cod) assembled using data from public repositories", "biocViews": [ "AnnotationData", "ChipDb", "CodelinkChip", "Mus_musculus", "mi16cod" ], "Author": "Diego Diez", "Maintainer": "Diego Diez ", "organism": "Mus musculus", "manufacturer": "Codelink", "source.ver": "src/contrib/mi16cod.db_3.4.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 779 }, "mirbase.db": { "Package": "mirbase.db", "Version": "1.2.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.22.5)" ], "Imports": [ "methods", "AnnotationDbi" ], "License": "file LICENSE", "MD5sum": "316bc12cee8c2dd9240b7fc30cd1619e", "NeedsCompilation": "no", "Title": "miRBase: the microRNA database", "Description": "miRBase: the microRNA database assembled using data from miRBase (http://www.mirbase.org/).", "biocViews": [ "AnnotationData", "FunctionalAnnotation" ], "Author": "James F. Reid ", "Maintainer": "James F. Reid ", "source.ver": "src/contrib/mirbase.db_1.2.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": true, "Rank": 92, "suggestsMe": [ "GenomicFeatures" ] }, "miRBaseVersions.db": { "Package": "miRBaseVersions.db", "Version": "1.1.0", "Imports": [ "AnnotationDbi", "DBI", "RSQLite", "methods", "gtools" ], "Suggests": [ "testthat", "knitr", "rmarkdown", "annotate" ], "License": "Artistic-2.0", "MD5sum": "9944ab7a474f84a40100c56298f9cb77", "NeedsCompilation": "no", "Title": "Collection of mature miRNA names of 22 different miRBase release versions", "Description": "Annotation package containing all available miRNA names from 22 versions (data from http://www.mirbase.org/).", "biocViews": [ "AnnotationData", "Preprocessing", "miRNA" ], "Author": "Stefan Haunsberger [aut, cre]", "Maintainer": "Stefan Haunsberger ", "VignetteBuilder": "knitr", "source.ver": "src/contrib/miRBaseVersions.db_1.1.0.tar.gz", "vignettes": [ "vignettes/miRBaseVersions.db/inst/doc/miRBaseVersions.db-vignette.pdf", "vignettes/miRBaseVersions.db/inst/doc/miRBaseVersions.db-vignette.html" ], "vignetteTitles": [ "miRBaseVersions.db-vignette.pdf", "miRBaseVersions.db-vignette.html" ], "hasREADME": false, "hasNEWS": true, "hasINSTALL": false, "hasLICENSE": false, "Rank": 151, "dependsOnMe": [ "miRNAmeConverter" ] }, "mirna102xgaincdf": { "Package": "mirna102xgaincdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "9091a45c2ac15c2de0263743ab334f97", "NeedsCompilation": "no", "Title": "mirna102xgaincdf", "Description": "A package containing an environment representing the miRNA-1_0_2Xgain.CDF file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "mirna102xgain" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/mirna102xgaincdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 291 }, "mirna10cdf": { "Package": "mirna10cdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "814da2a2e298e132f4db0b2e8ab814be", "NeedsCompilation": "no", "Title": "mirna10cdf", "Description": "A package containing an environment representing the miRNA-1_0.CDF file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "mirna10" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/mirna10cdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 255, "suggestsMe": [ "ExiMiR" ] }, "mirna10probe": { "Package": "mirna10probe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "8bfa6cdfeee1c563b4881214bd5d4ce1", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type mirna10", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was miRNA-1\\_0\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "mirna10", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/mirna10probe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 591 }, "mirna20cdf": { "Package": "mirna20cdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "56f7807673ff108427ae7f6bdf85ae1c", "NeedsCompilation": "no", "Title": "mirna20cdf", "Description": "A package containing an environment representing the miRNA-2_0.cdf file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "mirna20" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/mirna20cdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 179 }, "miRNAtap.db": { "Package": "miRNAtap.db", "Version": "0.99.10", "Depends": [ "miRNAtap" ], "Imports": [ "AnnotationDbi", "DBI", "RSQLite", "miRNAtap" ], "License": "GPL-2", "MD5sum": "48010280b68d6f1ddbff3b374132ce0a", "NeedsCompilation": "no", "Title": "Data for miRNAtap", "Description": "This package holds the database for miRNAtap.", "biocViews": [ "AnnotationData", "miRNA" ], "Author": "Maciej Pajak, T. Ian Simpson", "Maintainer": "Maciej Pajak ", "source.ver": "src/contrib/miRNAtap.db_0.99.10.tar.gz", "vignettes": [ "vignettes/miRNAtap.db/inst/doc/miRNAtap.db.pdf" ], "vignetteTitles": [ "miRNAtap.db" ], "hasREADME": true, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rfiles": [ "vignettes/miRNAtap.db/inst/doc/miRNAtap.db.R" ], "Rank": 97, "suggestsMe": [ "miRNAtap" ], "importsMe": [ "SpidermiR" ] }, "mm24kresogen.db": { "Package": "mm24kresogen.db", "Version": "2.5.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.13.19)", "org.Mm.eg.db (>= 2.5.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "annotate" ], "License": "Artistic-2.0", "MD5sum": "437f5d4bc225ee500af1ecc2d4da472b", "NeedsCompilation": "no", "Title": "RNG_MRC Mouse Pangenomic 24k Set annotation data (chip mm24kresogen)", "Description": "RNG_MRC Mouse Pangenomic 24k Set annotation data (chip mm24kresogen) assembled using data from public repositories", "biocViews": [ "AnnotationData", "Mus_musculus", "RNG_MRCChip", "mm24kresogen" ], "Author": "AltraBio", "Maintainer": "Simon de Bernard ", "organism": "Mus musculus", "manufacturer": "RNG_MRC", "source.ver": "src/contrib/mm24kresogen.db_2.5.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "MmAgilentDesign026655.db": { "Package": "MmAgilentDesign026655.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Mm.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "7ef619bd2c74f22ea4f3c2b2c4131fe9", "NeedsCompilation": "no", "Title": "Agilent Chips that use Agilent design number 026655 annotation data (chip MmAgilentDesign026655)", "Description": "Agilent Chips that use Agilent design number 026655 annotation data (chip MmAgilentDesign026655) assembled using data from public repositories", "biocViews": [ "AgilentChip", "AnnotationData", "ChipDb", "MmAgilentDesign026655", "Mus_musculus" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Mus musculus", "manufacturer": "Agilent", "source.ver": "src/contrib/MmAgilentDesign026655.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 396 }, "moe430a.db": { "Package": "moe430a.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Mm.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "c95b12e1954943ccc347ae57794e1c19", "NeedsCompilation": "no", "Title": "Affymetrix Mouse Expression Set 430 annotation data (chip moe430a)", "Description": "Affymetrix Mouse Expression Set 430 annotation data (chip moe430a) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Mus_musculus", "moe430a" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Mus musculus", "manufacturer": "Affymetrix", "source.ver": "src/contrib/moe430a.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 132 }, "moe430acdf": { "Package": "moe430acdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "b03f1295fc483f0d782a4615e8ca0137", "NeedsCompilation": "no", "Title": "moe430acdf", "Description": "A package containing an environment representing the MOE430A.CDF file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "cdf", "moe430a" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/moe430acdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 162 }, "moe430aprobe": { "Package": "moe430aprobe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "0aa83189d04599a65211d1a2f0a51c8f", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type moe430a", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was MOE430A\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "moe430a", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/moe430aprobe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 396 }, "moe430b.db": { "Package": "moe430b.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Mm.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "74027eafdb3815a8310e84ade3a43dff", "NeedsCompilation": "no", "Title": "Affymetrix Mouse Expression Set 430 annotation data (chip moe430b)", "Description": "Affymetrix Mouse Expression Set 430 annotation data (chip moe430b) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Mus_musculus", "moe430b" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Mus musculus", "manufacturer": "Affymetrix", "source.ver": "src/contrib/moe430b.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 396 }, "moe430bcdf": { "Package": "moe430bcdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "b7112dcf8ccfe4e079ca67ff62046f2e", "NeedsCompilation": "no", "Title": "moe430bcdf", "Description": "A package containing an environment representing the MOE430B.CDF file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "cdf", "moe430b" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/moe430bcdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 319 }, "moe430bprobe": { "Package": "moe430bprobe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "1368e6f4225babe7a693ccd39a3a436a", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type moe430b", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was MOE430B\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "moe430b", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/moe430bprobe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 591 }, "moex10stprobeset.db": { "Package": "moex10stprobeset.db", "Version": "8.7.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.39.4)", "org.Mm.eg.db (>= 3.4.2)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "1464d765c3db1bf50a6eb115ae30c74c", "NeedsCompilation": "no", "Title": "Affymetrix moex10 annotation data (chip moex10stprobeset)", "Description": "Affymetrix moex10 annotation data (chip moex10stprobeset) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Mus_musculus", "moex10stprobeset" ], "Author": "James W. MacDonald", "Maintainer": "Biocore Package Maintainer ", "organism": "Mus musculus", "manufacturer": "Affymetrix", "source.ver": "src/contrib/moex10stprobeset.db_8.7.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "moex10sttranscriptcluster.db": { "Package": "moex10sttranscriptcluster.db", "Version": "8.7.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.39.4)", "org.Mm.eg.db (>= 3.4.2)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "67253f6ab5cb335049139951ca8064bd", "NeedsCompilation": "no", "Title": "Affymetrix moex10 annotation data (chip moex10sttranscriptcluster)", "Description": "Affymetrix moex10 annotation data (chip moex10sttranscriptcluster) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Mus_musculus", "moex10sttranscriptcluster" ], "Author": "James W. MacDonald", "Maintainer": "Biocore Package Maintainer ", "organism": "Mus musculus", "manufacturer": "Affymetrix", "source.ver": "src/contrib/moex10sttranscriptcluster.db_8.7.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 268 }, "MoExExonProbesetLocation": { "Package": "MoExExonProbesetLocation", "Version": "1.15.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.7.17)" ], "License": "LGPL", "MD5sum": "07eea205fce2a8cf4585fa7e71fb0057", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type MoEx", "Description": "This package was automatically created by package AnnotationForge version 1.7.17. The exon-level probeset genome location was retrieved from Netaffx using AffyCompatible.", "biocViews": [ "AffymetrixChip", "AnnotationData", "MoEx", "Mus musculus", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Raffaele A. Calogero ", "source.ver": "src/contrib/MoExExonProbesetLocation_1.15.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 359 }, "mogene.1.0.st.v1frmavecs": { "Package": "mogene.1.0.st.v1frmavecs", "Version": "1.1.0", "Depends": [ "R (>= 2.10.0)" ], "License": "GPL (>= 2)", "MD5sum": "b46f76903d0f19b85e8fa30347813ff5", "NeedsCompilation": "no", "Title": "Vectors used by frma for microarrays of type mogene.1.0.st.v1frmavecs", "Description": "This package was created by frmaTools version 1.13.0.", "biocViews": [ "AffymetrixChip", "AnnotationData", "FRMA", "Homo_sapiens", "mogene.1.0.st.v1" ], "Author": "Matthew N. McCall , Rafael A. Irizarry ", "Maintainer": "Matthew N. McCall ", "source.ver": "src/contrib/mogene.1.0.st.v1frmavecs_1.1.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "mogene10stprobeset.db": { "Package": "mogene10stprobeset.db", "Version": "8.7.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.39.4)", "org.Mm.eg.db (>= 3.4.2)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "f4859f71d1314d19ead1c4fe20c04e4b", "NeedsCompilation": "no", "Title": "Affymetrix mogene10 annotation data (chip mogene10stprobeset)", "Description": "Affymetrix mogene10 annotation data (chip mogene10stprobeset) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Mus_musculus", "mogene10stprobeset" ], "Author": "James W. MacDonald", "Maintainer": "Biocore Package Maintainer ", "organism": "Mus musculus", "manufacturer": "Affymetrix", "source.ver": "src/contrib/mogene10stprobeset.db_8.7.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 225 }, "mogene10sttranscriptcluster.db": { "Package": "mogene10sttranscriptcluster.db", "Version": "8.7.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.39.4)", "org.Mm.eg.db (>= 3.4.2)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "84966d4986d62c859f61f2725c7b20ea", "NeedsCompilation": "no", "Title": "Affymetrix mogene10 annotation data (chip mogene10sttranscriptcluster)", "Description": "Affymetrix mogene10 annotation data (chip mogene10sttranscriptcluster) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Mus_musculus", "mogene10sttranscriptcluster" ], "Author": "James W. MacDonald", "Maintainer": "Biocore Package Maintainer ", "organism": "Mus musculus", "manufacturer": "Affymetrix", "source.ver": "src/contrib/mogene10sttranscriptcluster.db_8.7.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 71, "suggestsMe": [ "pcaGoPromoter" ] }, "mogene10stv1cdf": { "Package": "mogene10stv1cdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "9c0271f5d6493290fc47f041a8c3f925", "NeedsCompilation": "no", "Title": "mogene10stv1cdf", "Description": "A package containing an environment representing the MoGene-1_0-st-v1.cdf file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "cdf", "mogene10stv1" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/mogene10stv1cdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 105 }, "mogene10stv1probe": { "Package": "mogene10stv1probe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "63cba1e2a0edee9f201267057fddb0fa", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type mogene10stv1", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was MoGene-1\\_0-st-v1\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "mogene10stv1", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/mogene10stv1probe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 278 }, "mogene11stprobeset.db": { "Package": "mogene11stprobeset.db", "Version": "8.7.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.39.4)", "org.Mm.eg.db (>= 3.4.2)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "9bfdd5ede041282555dca8a6a75e7579", "NeedsCompilation": "no", "Title": "Affymetrix mogene11 annotation data (chip mogene11stprobeset)", "Description": "Affymetrix mogene11 annotation data (chip mogene11stprobeset) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Mus_musculus", "mogene11stprobeset" ], "Author": "James W. MacDonald", "Maintainer": "Biocore Package Maintainer ", "organism": "Mus musculus", "manufacturer": "Affymetrix", "source.ver": "src/contrib/mogene11stprobeset.db_8.7.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "mogene11sttranscriptcluster.db": { "Package": "mogene11sttranscriptcluster.db", "Version": "8.7.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.39.4)", "org.Mm.eg.db (>= 3.4.2)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "a3bc3ed82534b5a53bdba583f7a403c7", "NeedsCompilation": "no", "Title": "Affymetrix mogene11 annotation data (chip mogene11sttranscriptcluster)", "Description": "Affymetrix mogene11 annotation data (chip mogene11sttranscriptcluster) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Mus_musculus", "mogene11sttranscriptcluster" ], "Author": "James W. MacDonald", "Maintainer": "Biocore Package Maintainer ", "organism": "Mus musculus", "manufacturer": "Affymetrix", "source.ver": "src/contrib/mogene11sttranscriptcluster.db_8.7.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 291 }, "mogene20stprobeset.db": { "Package": "mogene20stprobeset.db", "Version": "8.7.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.39.4)", "org.Mm.eg.db (>= 3.4.2)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "228a1172930e05806cd8b184b326b556", "NeedsCompilation": "no", "Title": "Affymetrix mogene20 annotation data (chip mogene20stprobeset)", "Description": "Affymetrix mogene20 annotation data (chip mogene20stprobeset) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Mus_musculus", "mogene20stprobeset" ], "Author": "James W. MacDonald", "Maintainer": "Biocore Package Maintainer ", "organism": "Mus musculus", "manufacturer": "Affymetrix", "source.ver": "src/contrib/mogene20stprobeset.db_8.7.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 278 }, "mogene20sttranscriptcluster.db": { "Package": "mogene20sttranscriptcluster.db", "Version": "8.7.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.39.4)", "org.Mm.eg.db (>= 3.4.2)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "c3c6f08d15d9cd3fe850860de0a06213", "NeedsCompilation": "no", "Title": "Affymetrix mogene20 annotation data (chip mogene20sttranscriptcluster)", "Description": "Affymetrix mogene20 annotation data (chip mogene20sttranscriptcluster) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Mus_musculus", "mogene20sttranscriptcluster" ], "Author": "James W. MacDonald", "Maintainer": "Biocore Package Maintainer ", "organism": "Mus musculus", "manufacturer": "Affymetrix", "source.ver": "src/contrib/mogene20sttranscriptcluster.db_8.7.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 123 }, "mogene21stprobeset.db": { "Package": "mogene21stprobeset.db", "Version": "8.7.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.39.4)", "org.Mm.eg.db (>= 3.4.2)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "34c2b435725e7dcd29c3d921453216dc", "NeedsCompilation": "no", "Title": "Affymetrix mogene21 annotation data (chip mogene21stprobeset)", "Description": "Affymetrix mogene21 annotation data (chip mogene21stprobeset) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Mus_musculus", "mogene21stprobeset" ], "Author": "James W. MacDonald", "Maintainer": "Biocore Package Maintainer ", "organism": "Mus musculus", "manufacturer": "Affymetrix", "source.ver": "src/contrib/mogene21stprobeset.db_8.7.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 359 }, "mogene21sttranscriptcluster.db": { "Package": "mogene21sttranscriptcluster.db", "Version": "8.7.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.39.4)", "org.Mm.eg.db (>= 3.4.2)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "0f131b607470652724d7b22ae2af1c7a", "NeedsCompilation": "no", "Title": "Affymetrix mogene21 annotation data (chip mogene21sttranscriptcluster)", "Description": "Affymetrix mogene21 annotation data (chip mogene21sttranscriptcluster) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Mus_musculus", "mogene21sttranscriptcluster" ], "Author": "James W. MacDonald", "Maintainer": "Biocore Package Maintainer ", "organism": "Mus musculus", "manufacturer": "Affymetrix", "source.ver": "src/contrib/mogene21sttranscriptcluster.db_8.7.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 291 }, "mouse.db0": { "Package": "mouse.db0", "Version": "3.6.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.41.4)" ], "Imports": [ "methods", "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "52dbffc58f02804777266869e3c549c7", "NeedsCompilation": "no", "Title": "Base Level Annotation databases for mouse", "Description": "Base annotation databases for mouse, intended ONLY to be used by AnnotationDbi to produce regular annotation packages.", "biocViews": [ "AnnotationData", "Mus_musculus", "db0" ], "Author": "Bioconductor Core Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Mus musculus", "source.ver": "src/contrib/mouse.db0_3.6.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 208 }, "mouse4302.db": { "Package": "mouse4302.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Mm.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "f959fad0072a265d04a8851db1deed74", "NeedsCompilation": "no", "Title": "Affymetrix Mouse Genome 430 2.0 Array annotation data (chip mouse4302)", "Description": "Affymetrix Mouse Genome 430 2.0 Array annotation data (chip mouse4302) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Mus_musculus", "mouse4302" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Mus musculus", "manufacturer": "Affymetrix", "source.ver": "src/contrib/mouse4302.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 48, "suggestsMe": [ "ChIPXpress", "MLP", "pcaGoPromoter" ], "dependsOnMe": [ "Hiiragi2013" ] }, "mouse4302cdf": { "Package": "mouse4302cdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "bda3463613f958de35c58777db05cec2", "NeedsCompilation": "no", "Title": "mouse4302cdf", "Description": "A package containing an environment representing the Mouse430_2.cdf file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "cdf", "mouse4302" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/mouse4302cdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 56, "suggestsMe": [ "ChIPXpress" ] }, "mouse4302frmavecs": { "Package": "mouse4302frmavecs", "Version": "1.5.0", "Depends": [ "R (>= 2.10.0)" ], "License": "GPL (>= 2)", "MD5sum": "ec144b381abbe54d696356c1c124e372", "NeedsCompilation": "no", "Title": "Vectors used by frma for microarrays of type mouse4302", "Description": "This package was created by frmaTools version 1.19.3 and hgu133ahsentrezgcdf version 19.0.0.", "biocViews": [ "AffymetrixChip", "AnnotationData", "FRMA", "Mus_musculus", "mouse4302" ], "Author": "Matthew N. McCall , Rafael A. Irizarry ", "Maintainer": "Matthew N. McCall ", "source.ver": "src/contrib/mouse4302frmavecs_1.5.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 268, "suggestsMe": [ "ChIPXpress" ] }, "mouse4302probe": { "Package": "mouse4302probe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "7116787a7db241a545e79e419a8cfa0d", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type mouse4302", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Mouse430\\_2\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "mouse4302", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/mouse4302probe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 208 }, "mouse430a2.db": { "Package": "mouse430a2.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Mm.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "4700ba9bf151277334af4fef9020a197", "NeedsCompilation": "no", "Title": "Affymetrix Mouse Genome 430A 2.0 Array annotation data (chip mouse430a2)", "Description": "Affymetrix Mouse Genome 430A 2.0 Array annotation data (chip mouse430a2) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Mus_musculus", "mouse430a2" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Mus musculus", "manufacturer": "Affymetrix", "source.ver": "src/contrib/mouse430a2.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 132 }, "mouse430a2cdf": { "Package": "mouse430a2cdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "1114c0415d1200bc21ad205e0830b075", "NeedsCompilation": "no", "Title": "mouse430a2cdf", "Description": "A package containing an environment representing the Mouse430A_2.cdf file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "cdf", "mouse430a2" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/mouse430a2cdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 195 }, "mouse430a2frmavecs": { "Package": "mouse430a2frmavecs", "Version": "1.3.0", "Depends": [ "R (>= 2.10.0)" ], "License": "GPL (>= 2)", "MD5sum": "3bcb8de9182bbb8de5d560748eafa0cc", "NeedsCompilation": "no", "Title": "Vectors used by frma for microarrays of type mouse430a2", "Description": "This package was created by frmaTools version 1.19.3 and hgu133ahsentrezgcdf version 19.0.0.", "biocViews": [ "AffymetrixChip", "AnnotationData", "FRMA", "Mus_musculus", "mouse430a2" ], "Author": "Matthew N. McCall , Rafael A. Irizarry ", "Maintainer": "Matthew N. McCall ", "source.ver": "src/contrib/mouse430a2frmavecs_1.3.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 824 }, "mouse430a2probe": { "Package": "mouse430a2probe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "bb3c34477d4fcf03a539772011118795", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type mouse430a2", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Mouse430A\\_2\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "mouse430a2", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/mouse430a2probe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "mouseCHRLOC": { "Package": "mouseCHRLOC", "Version": "2.1.6", "Depends": [ "R(>= 2.7.0)" ], "License": "The Artistic License, Version 2.0", "MD5sum": "0b81d7391e628cc355af4de3c5585a5f", "NeedsCompilation": "no", "Title": "A data package containing annotation data for mouseCHRLOC", "Description": "Annotation data file for mouseCHRLOC assembled using data from public data repositories", "biocViews": [ "AnnotationData", "FunctionalAnnotation", "Mus_musculus" ], "Author": "Ting-Yuan Liu, ChenWei Lin, Seth Falcon, Jianhua Zhang, James W. MacDonald", "Maintainer": "Biocore Data Team ", "organism": "Mus musculus", "source.ver": "src/contrib/mouseCHRLOC_2.1.6.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 591 }, "mpedbarray.db": { "Package": "mpedbarray.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Mm.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "7bcd1fee1554b6f8844c9bf30b7db4ef", "NeedsCompilation": "no", "Title": "FHCRC Nelson Lab mpedbarray Annotation Data (mpedbarray)", "Description": "FHCRC Nelson Lab mpedbarray Annotation Data (mpedbarray) assembled using data from public repositories", "biocViews": [ "AnnotationData", "ChipDb", "FHCRC Nelson LabChip", "Mus_musculus", "mpedbarray" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Mus musculus", "manufacturer": "FHCRC Nelson Lab", "source.ver": "src/contrib/mpedbarray.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 726 }, "mta10probeset.db": { "Package": "mta10probeset.db", "Version": "8.7.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.39.4)", "org.Mm.eg.db (>= 3.4.2)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "80ca03d68b6c9dd51d50122039b2d8ba", "NeedsCompilation": "no", "Title": "Affymetrix mta10 annotation data (chip mta10probeset)", "Description": "Affymetrix mta10 annotation data (chip mta10probeset) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Mus_musculus", "mta10probeset" ], "Author": "James W. MacDonald", "Maintainer": "Biocore Package Maintainer ", "organism": "Mus musculus", "manufacturer": "Affymetrix", "source.ver": "src/contrib/mta10probeset.db_8.7.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "mta10transcriptcluster.db": { "Package": "mta10transcriptcluster.db", "Version": "8.7.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.39.4)", "org.Mm.eg.db (>= 3.4.2)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "04cb3bf18fafd5bef3c4444d32df8bd0", "NeedsCompilation": "no", "Title": "Affymetrix mta10 annotation data (chip mta10transcriptcluster)", "Description": "Affymetrix mta10 annotation data (chip mta10transcriptcluster) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Mus_musculus", "mta10transcriptcluster" ], "Author": "James W. MacDonald", "Maintainer": "Biocore Package Maintainer ", "organism": "Mus musculus", "manufacturer": "Affymetrix", "source.ver": "src/contrib/mta10transcriptcluster.db_8.7.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "mu11ksuba.db": { "Package": "mu11ksuba.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Mm.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "2ed9098b7efa45430488d4c9f8df0750", "NeedsCompilation": "no", "Title": "Affymetrix Murine 11K Set annotation data (chip mu11ksuba)", "Description": "Affymetrix Murine 11K Set annotation data (chip mu11ksuba) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Mus_musculus", "mu11ksuba" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Mus musculus", "manufacturer": "Affymetrix", "source.ver": "src/contrib/mu11ksuba.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "mu11ksubacdf": { "Package": "mu11ksubacdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "52fb8ac56435775022fb62f40efafd22", "NeedsCompilation": "no", "Title": "mu11ksubacdf", "Description": "A package containing an environment representing the Mu11KsubA.CDF file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "cdf", "mu11ksuba" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/mu11ksubacdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "mu11ksubaprobe": { "Package": "mu11ksubaprobe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "813cd0750cca6ff0cfb696b83286177e", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type mu11ksuba", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Mu11KsubA\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "mu11ksuba", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/mu11ksubaprobe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "mu11ksubb.db": { "Package": "mu11ksubb.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Mm.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "44bde347574efd353ae89f41c06ccf76", "NeedsCompilation": "no", "Title": "Affymetrix Murine 11K Set annotation data (chip mu11ksubb)", "Description": "Affymetrix Murine 11K Set annotation data (chip mu11ksubb) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Mus_musculus", "mu11ksubb" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Mus musculus", "manufacturer": "Affymetrix", "source.ver": "src/contrib/mu11ksubb.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 529 }, "mu11ksubbcdf": { "Package": "mu11ksubbcdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "f9691ea74e19dfe57bf6cca6ed396947", "NeedsCompilation": "no", "Title": "mu11ksubbcdf", "Description": "A package containing an environment representing the Mu11KsubB.CDF file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "cdf", "mu11ksubb" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/mu11ksubbcdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 591 }, "mu11ksubbprobe": { "Package": "mu11ksubbprobe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "28d162e18e4e16e3c6db47195d2ea0ac", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type mu11ksubb", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Mu11KsubB\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "mu11ksubb", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/mu11ksubbprobe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 726 }, "Mu15v1.db": { "Package": "Mu15v1.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Mm.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "e9297b5fe223b046bc65dc6ea0b4376d", "NeedsCompilation": "no", "Title": "FHCRC Genomics Shared Resource Mu15v1 Annotation Data (Mu15v1)", "Description": "FHCRC Genomics Shared Resource Mu15v1 Annotation Data (Mu15v1) assembled using data from public repositories", "biocViews": [ "AnnotationData", "ChipDb", "FHCRC Genomics Shared ResourceChip", "Mu15v1", "Mus_musculus" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Mus musculus", "manufacturer": "FHCRC Genomics Shared Resource", "source.ver": "src/contrib/Mu15v1.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 726 }, "mu19ksuba.db": { "Package": "mu19ksuba.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Mm.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "668c92eb1b9e2367c5a69dc8d0498cca", "NeedsCompilation": "no", "Title": "Affymetrix Murine Genome 19k Set annotation data (chip mu19ksuba)", "Description": "Affymetrix Murine Genome 19k Set annotation data (chip mu19ksuba) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Mus_musculus", "mu19ksuba" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Mus musculus", "manufacturer": "Affymetrix", "source.ver": "src/contrib/mu19ksuba.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 529 }, "mu19ksubacdf": { "Package": "mu19ksubacdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "83a9e7a3bac665b655786e66dbd77848", "NeedsCompilation": "no", "Title": "mu19ksubacdf", "Description": "A package containing an environment representing the Mu19KsubA.CDF file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "cdf", "mu19ksuba" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/mu19ksubacdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 529 }, "mu19ksubb.db": { "Package": "mu19ksubb.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Mm.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "54ffae3e05d9fd79caadf51954473b93", "NeedsCompilation": "no", "Title": "Affymetrix Murine Genome 19k Set annotation data (chip mu19ksubb)", "Description": "Affymetrix Murine Genome 19k Set annotation data (chip mu19ksubb) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Mus_musculus", "mu19ksubb" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Mus musculus", "manufacturer": "Affymetrix", "source.ver": "src/contrib/mu19ksubb.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 591 }, "mu19ksubbcdf": { "Package": "mu19ksubbcdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "35e5ebcb4cb51950a85c1e3622bb39f0", "NeedsCompilation": "no", "Title": "mu19ksubbcdf", "Description": "A package containing an environment representing the Mu19KsubB.CDF file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "cdf", "mu19ksubb" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/mu19ksubbcdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "mu19ksubc.db": { "Package": "mu19ksubc.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Mm.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "0cb0abb16337b8acc9dd365f5225856c", "NeedsCompilation": "no", "Title": "Affymetrix Murine Genome 19k Set annotation data (chip mu19ksubc)", "Description": "Affymetrix Murine Genome 19k Set annotation data (chip mu19ksubc) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Mus_musculus", "mu19ksubc" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Mus musculus", "manufacturer": "Affymetrix", "source.ver": "src/contrib/mu19ksubc.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "mu19ksubccdf": { "Package": "mu19ksubccdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "e53ef2716f88022e5e41e2cd857fc2a3", "NeedsCompilation": "no", "Title": "mu19ksubccdf", "Description": "A package containing an environment representing the Mu19KsubC.CDF file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "cdf", "mu19ksubc" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/mu19ksubccdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 529 }, "Mu22v3.db": { "Package": "Mu22v3.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Mm.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "44aaebe909be9b0108256194c55cf6fb", "NeedsCompilation": "no", "Title": "FHCRC Genomics Shared Resource Mu22v3 Annotation Data (Mu22v3)", "Description": "FHCRC Genomics Shared Resource Mu22v3 Annotation Data (Mu22v3) assembled using data from public repositories", "biocViews": [ "AnnotationData", "ChipDb", "FHCRC Genomics Shared ResourceChip", "Mu22v3", "Mus_musculus" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Mus musculus", "manufacturer": "FHCRC Genomics Shared Resource", "source.ver": "src/contrib/Mu22v3.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 824 }, "mu6500subacdf": { "Package": "mu6500subacdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "e72152fc4bae307e3858160e018b7f92", "NeedsCompilation": "no", "Title": "mu6500subacdf", "Description": "A package containing an environment representing the Mu6500subA.CDF file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "cdf", "mu6500suba" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/mu6500subacdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 529 }, "mu6500subbcdf": { "Package": "mu6500subbcdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "5000bea2a018b4b6ec05cda111438bc1", "NeedsCompilation": "no", "Title": "mu6500subbcdf", "Description": "A package containing an environment representing the Mu6500subB.CDF file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "cdf", "mu6500subb" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/mu6500subbcdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "mu6500subccdf": { "Package": "mu6500subccdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "c7cbbe6c70a0a3ae11600ad6c0e540c1", "NeedsCompilation": "no", "Title": "mu6500subccdf", "Description": "A package containing an environment representing the Mu6500subC.CDF file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "cdf", "mu6500subc" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/mu6500subccdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "mu6500subdcdf": { "Package": "mu6500subdcdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "a614674e8bc60fefd8520dd25d45f8d0", "NeedsCompilation": "no", "Title": "mu6500subdcdf", "Description": "A package containing an environment representing the Mu6500subD.CDF file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "cdf", "mu6500subd" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/mu6500subdcdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 529 }, "Mus.musculus": { "Package": "Mus.musculus", "Version": "1.3.1", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.17.11)", "methods", "OrganismDbi (>= 1.11.39)", "GenomicFeatures", "GO.db", "org.Mm.eg.db", "TxDb.Mmusculus.UCSC.mm10.knownGene" ], "Imports": [ "GenomicFeatures", "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "1b8defe64c2dd308a88d1ac7a4ce04b9", "NeedsCompilation": "no", "Title": "Annotation package for the Mus.musculus object", "Description": "Contains the Mus.musculus object to access data from several related annotation packages.", "biocViews": [ "AnnotationData", "Genetics", "Mus_musculus", "OrganismDb" ], "Author": "Bioconductor Core Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Mus musculus", "source.ver": "src/contrib/Mus.musculus_1.3.1.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 38, "suggestsMe": [ "epivizr", "epivizrChart", "epivizrData", "epivizrStandalone" ], "dependsOnMe": [ "RNAseq123" ] }, "mwgcod.db": { "Package": "mwgcod.db", "Version": "3.4.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.31.18)", "org.Mm.eg.db (>= 3.2.1)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "3d6e2af6b05d6e07a212c043dc9d37c4", "NeedsCompilation": "no", "Title": "Codelink Mouse Whole Genome Bioarray (~36 000 mouse gene targets) annotation data (chip mwgcod)", "Description": "Codelink Mouse Whole Genome Bioarray (~36 000 mouse gene targets) annotation data (chip mwgcod) assembled using data from public repositories", "biocViews": [ "AnnotationData", "ChipDb", "CodelinkChip", "Mus_musculus", "mwgcod" ], "Author": "Diego Diez", "Maintainer": "Diego Diez ", "organism": "Mus musculus", "manufacturer": "Codelink", "source.ver": "src/contrib/mwgcod.db_3.4.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 726 }, "Norway981.db": { "Package": "Norway981.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Hs.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "85367390919bba9018438585e59fbb87", "NeedsCompilation": "no", "Title": "Norway981 http://genome-www5.stanford.edu/ Annotation Data (Norway981)", "Description": "Norway981 http://genome-www5.stanford.edu/ Annotation Data (Norway981) assembled using data from public repositories", "biocViews": [ "AnnotationData", "ChipDb", "Homo_sapiens", "Norway981", "Stanford Microarray DatabaseChip" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Homo sapiens", "manufacturer": "Stanford Microarray Database", "source.ver": "src/contrib/Norway981.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 779 }, "nugohs1a520180.db": { "Package": "nugohs1a520180.db", "Version": "3.4.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.31.18)", "org.Hs.eg.db (>= 3.2.1)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "f83701b35b07e69e1ad503b546bb5eaf", "NeedsCompilation": "no", "Title": "Affymetrix nugohs1a520180 annotation data (chip nugohs1a520180)", "Description": "Affymetrix nugohs1a520180 annotation data (chip nugohs1a520180) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Homo_sapiens", "nugohs1a520180" ], "Author": "Philip de Groot", "Maintainer": "Philip de Groot ", "organism": "Homo sapiens", "manufacturer": "Affymetrix", "source.ver": "src/contrib/nugohs1a520180.db_3.4.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 591 }, "nugohs1a520180cdf": { "Package": "nugohs1a520180cdf", "Version": "3.4.0", "Depends": [ "R (>= 2.10)", "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "aa152658a4a801cc0edb552a98aee841", "NeedsCompilation": "no", "Title": "nugohs1a520180cdf", "Description": "A package containing an environment representing the NuGO_Hs1a520180.cdf file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "nugohs1a520180" ], "Author": "Philip de Groot", "Maintainer": "Philip de Groot ", "source.ver": "src/contrib/nugohs1a520180cdf_3.4.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 529 }, "nugohs1a520180probe": { "Package": "nugohs1a520180probe", "Version": "3.4.0", "Depends": [ "R (>= 2.10)", "AnnotationDbi (>= 1.11.20)" ], "License": "LGPL", "MD5sum": "6acf20ac4a799eaae97d0a64426d6ac3", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type nugohs1a520180", "Description": "This package was automatically created by package AnnotationForge version 1.11.20. The probe sequence data was obtained from http://www.affymetrix.com.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "nugohs1a520180", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Philip de Groot ", "source.ver": "src/contrib/nugohs1a520180probe_3.4.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 726 }, "nugomm1a520177.db": { "Package": "nugomm1a520177.db", "Version": "3.4.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.31.18)", "org.Mm.eg.db (>= 3.2.1)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "99f69ea2cbb80a79bedee99e3d726e50", "NeedsCompilation": "no", "Title": "Affymetrix nugomm1a520177 annotation data (chip nugomm1a520177)", "Description": "Affymetrix nugomm1a520177 annotation data (chip nugomm1a520177) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Mus_musculus", "nugomm1a520177" ], "Author": "Philip de Groot", "Maintainer": "Philip de Groot ", "organism": "Mus musculus", "manufacturer": "Affymetrix", "source.ver": "src/contrib/nugomm1a520177.db_3.4.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 726 }, "nugomm1a520177cdf": { "Package": "nugomm1a520177cdf", "Version": "3.4.0", "Depends": [ "R (>= 2.10)", "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "fc60c2018580decaea30f09de55142fb", "NeedsCompilation": "no", "Title": "nugomm1a520177cdf", "Description": "A package containing an environment representing the NuGO_Mm1a520177.cdf file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "cdf", "nugomm1a520177" ], "Author": "Philip de Groot", "Maintainer": "Philip de Groot ", "source.ver": "src/contrib/nugomm1a520177cdf_3.4.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "nugomm1a520177probe": { "Package": "nugomm1a520177probe", "Version": "3.4.0", "Depends": [ "R (>= 2.10)", "AnnotationDbi (>= 1.11.20)" ], "License": "LGPL", "MD5sum": "7fa974389ad2be6ebda8810496221a9b", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type nugomm1a520177", "Description": "This package was automatically created by package AnnotationForge version 1.11.20. The probe sequence data was obtained from http://www.affymetrix.com.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Mus_musculus", "nugomm1a520177", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Philip de Groot ", "source.ver": "src/contrib/nugomm1a520177probe_3.4.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 824 }, "oligoData": { "Package": "oligoData", "Version": "1.8.0", "Depends": [ "R (>= 2.15.0)", "oligo" ], "Suggests": [ "pd.hg.u95av2", "pd.huex.1.0.st.v2", "pd.mapping50k.xba240", "pd.hg18.60mer.expr", "pd.2006.07.18.hg18.refseq.promoter", "pd.hugene.1.0.st.v1" ], "License": "LGPL (>= 2)", "MD5sum": "9625cfd4b31bb575c4029a0632a7ee12", "NeedsCompilation": "no", "Title": "Dataset samples for the oligo package", "Description": "Dataset samples (Affymetrix: Expression, Gene, Exon, SNP; NimbleGen: Expression, Tiling) to be used with the oligo package.", "biocViews": [ "AnnotationData", "ExperimentData" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/oligoData_1.8.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 134, "suggestsMe": [ "mimager", "oligo" ] }, "OperonHumanV3.db": { "Package": "OperonHumanV3.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Hs.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "648da5d4d63c6c8327f6035ee09f2b65", "NeedsCompilation": "no", "Title": "FHCRC Nelson Lab OperonHumanV3 Annotation Data (OperonHumanV3)", "Description": "FHCRC Nelson Lab OperonHumanV3 Annotation Data (OperonHumanV3) assembled using data from public repositories", "biocViews": [ "AnnotationData", "ChipDb", "FHCRC Nelson LabChip", "Homo_sapiens", "OperonHumanV3" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Homo sapiens", "manufacturer": "FHCRC Nelson Lab", "source.ver": "src/contrib/OperonHumanV3.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 726 }, "org.Ag.eg.db": { "Package": "org.Ag.eg.db", "Version": "3.6.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.41.4)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "46b5ed42776bb9b60e3c7f94d8ec0cff", "NeedsCompilation": "no", "Title": "Genome wide annotation for Anopheles", "Description": "Genome wide annotation for Anopheles, primarily based on mapping using Entrez Gene identifiers.", "biocViews": [ "AnnotationData", "Anopheles_gambiae", "OrgDb" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Anopheles gambiae", "source.ver": "src/contrib/org.Ag.eg.db_3.6.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 122, "importsMe": [ "geneXtendeR" ] }, "org.At.tair.db": { "Package": "org.At.tair.db", "Version": "3.6.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.41.4)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "b942aa50cd123d9b8f92e013db074458", "NeedsCompilation": "no", "Title": "Genome wide annotation for Arabidopsis", "Description": "Genome wide annotation for Arabidopsis, primarily based on mapping using TAIR identifiers.", "biocViews": [ "AnnotationData", "Arabidopsis_thaliana", "OrgDb" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Arabidopsis thaliana", "source.ver": "src/contrib/org.At.tair.db_3.6.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "dependsOnMe": [ "ag.db", "ath1121501.db" ], "Rank": 35, "suggestsMe": [ "AnnotationDbi" ] }, "org.Bt.eg.db": { "Package": "org.Bt.eg.db", "Version": "3.6.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.41.4)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "1d8a03220647ee7256efa1008ea0a5af", "NeedsCompilation": "no", "Title": "Genome wide annotation for Bovine", "Description": "Genome wide annotation for Bovine, primarily based on mapping using Entrez Gene identifiers.", "biocViews": [ "AnnotationData", "Bos_taurus", "OrgDb" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Bos taurus", "source.ver": "src/contrib/org.Bt.eg.db_3.6.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "dependsOnMe": [ "bovine.db" ], "Rank": 37, "suggestsMe": [ "AnnotationFuncs" ], "importsMe": [ "geneXtendeR" ] }, "org.Ce.eg.db": { "Package": "org.Ce.eg.db", "Version": "3.6.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.41.4)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "0e9ad2243b191e62f1c3979313aa71f5", "NeedsCompilation": "no", "Title": "Genome wide annotation for Worm", "Description": "Genome wide annotation for Worm, primarily based on mapping using Entrez Gene identifiers.", "biocViews": [ "AnnotationData", "Caenorhabditis_elegans", "OrgDb" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Caenorhabditis elegans", "source.ver": "src/contrib/org.Ce.eg.db_3.6.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "dependsOnMe": [ "celegans.db" ], "Rank": 40, "suggestsMe": [ "ChIPpeakAnno", "HTSanalyzeR", "RCAS" ], "importsMe": [ "geneXtendeR" ] }, "org.Cf.eg.db": { "Package": "org.Cf.eg.db", "Version": "3.6.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.41.4)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "7cc3516927a6458cbfb8b9e7176823ea", "NeedsCompilation": "no", "Title": "Genome wide annotation for Canine", "Description": "Genome wide annotation for Canine, primarily based on mapping using Entrez Gene identifiers.", "biocViews": [ "AnnotationData", "Canis_familiaris", "OrgDb" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Canis familiaris", "source.ver": "src/contrib/org.Cf.eg.db_3.6.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "dependsOnMe": [ "canine.db", "canine2.db" ], "Rank": 45, "suggestsMe": [ "MLP" ], "importsMe": [ "geneXtendeR" ] }, "org.Dm.eg.db": { "Package": "org.Dm.eg.db", "Version": "3.6.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.41.4)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "a7cada385422fb2098293db5756cb7d4", "NeedsCompilation": "no", "Title": "Genome wide annotation for Fly", "Description": "Genome wide annotation for Fly, primarily based on mapping using Entrez Gene identifiers.", "biocViews": [ "AnnotationData", "Drosophila_melanogaster", "OrgDb" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Drosophila melanogaster", "source.ver": "src/contrib/org.Dm.eg.db_3.6.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "dependsOnMe": [ "drosgenome1.db", "drosophila2.db", "indac.db" ], "Rank": 25, "suggestsMe": [ "annotatr", "chipenrich.data", "GeneAnswers", "HTSanalyzeR", "IntramiRExploreR", "RCAS", "RpsiXML" ], "importsMe": [ "chipenrich", "geneXtendeR" ] }, "org.Dr.eg.db": { "Package": "org.Dr.eg.db", "Version": "3.6.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.41.4)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "c4b2a8e03bec92727ac090bf8e7400cf", "NeedsCompilation": "no", "Title": "Genome wide annotation for Zebrafish", "Description": "Genome wide annotation for Zebrafish, primarily based on mapping using Entrez Gene identifiers.", "biocViews": [ "AnnotationData", "Danio_rerio", "OrgDb" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Danio rerio", "source.ver": "src/contrib/org.Dr.eg.db_3.6.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "dependsOnMe": [ "zebrafish.db" ], "Rank": 32, "suggestsMe": [ "chipenrich.data" ], "importsMe": [ "chipenrich", "geneXtendeR" ] }, "org.EcK12.eg.db": { "Package": "org.EcK12.eg.db", "Version": "3.6.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.41.4)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "7461697b2a6ffc5605ac06755776fbc7", "NeedsCompilation": "no", "Title": "Genome wide annotation for E coli strain K12", "Description": "Genome wide annotation for E coli strain K12, primarily based on mapping using Entrez Gene identifiers.", "biocViews": [ "AnnotationData", "Escherichia_coli", "OrgDb" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Escherichia coli", "source.ver": "src/contrib/org.EcK12.eg.db_3.6.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "dependsOnMe": [ "ecoli2.db" ], "Rank": 115, "suggestsMe": [ "qpgraph" ] }, "org.EcSakai.eg.db": { "Package": "org.EcSakai.eg.db", "Version": "3.6.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.41.4)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "7647c58238e04488363e9990bfdd5f1b", "NeedsCompilation": "no", "Title": "Genome wide annotation for E coli strain Sakai", "Description": "Genome wide annotation for E coli strain Sakai, primarily based on mapping using Entrez Gene identifiers.", "biocViews": [ "AnnotationData", "Escherichia_coli", "OrgDb" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Escherichia coli", "source.ver": "src/contrib/org.EcSakai.eg.db_3.6.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 225 }, "org.Gg.eg.db": { "Package": "org.Gg.eg.db", "Version": "3.6.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.41.4)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "72d349d2b23ce102db13cd8266458994", "NeedsCompilation": "no", "Title": "Genome wide annotation for Chicken", "Description": "Genome wide annotation for Chicken, primarily based on mapping using Entrez Gene identifiers.", "biocViews": [ "AnnotationData", "Gallus_gallus", "OrgDb" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Gallus gallus", "source.ver": "src/contrib/org.Gg.eg.db_3.6.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "dependsOnMe": [ "chicken.db" ], "Rank": 42, "suggestsMe": [ "annotatr" ], "importsMe": [ "geneXtendeR" ] }, "org.Hs.eg.db": { "Package": "org.Hs.eg.db", "Version": "3.6.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.41.4)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "3fa8de2859f317b59636f0e41b132e85", "NeedsCompilation": "no", "Title": "Genome wide annotation for Human", "Description": "Genome wide annotation for Human, primarily based on mapping using Entrez Gene identifiers.", "biocViews": [ "AnnotationData", "Homo_sapiens", "OrgDb", "humanLLMappings" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Homo sapiens", "source.ver": "src/contrib/org.Hs.eg.db_3.6.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "dependsOnMe": [ "annotation", "clariomdhumanprobeset.db", "clariomdhumantranscriptcluster.db", "clariomshumanhttranscriptcluster.db", "clariomshumantranscriptcluster.db", "CoCiteStats", "FDb.InfiniumMethylation.hg18", "FDb.InfiniumMethylation.hg19", "FEM", "GGHumanMethCancerPanelv1.db", "GSReg", "h10kcod.db", "h20kcod.db", "hcg110.db", "hgfocus.db", "hgu133a.db", "hgu133a2.db", "hgu133b.db", "hgu133plus2.db", "hgu219.db", "hgu95a.db", "hgu95av2.db", "hgu95b.db", "hgu95c.db", "hgu95d.db", "hgu95e.db", "hguatlas13k.db", "hgubeta7.db", "hguDKFZ31.db", "hgug4100a.db", "hgug4101a.db", "hgug4110b.db", "hgug4111a.db", "hgug4112a.db", "hgug4845a.db", "hguqiagenv3.db", "hi16cod.db", "Homo.sapiens", "hs25kresogen.db", "Hs6UG171.db", "HsAgilentDesign026652.db", "hta20probeset.db", "hta20transcriptcluster.db", "hthgu133a.db", "hthgu133b.db", "hu35ksuba.db", "hu35ksubb.db", "hu35ksubc.db", "hu35ksubd.db", "hu6800.db", "huex10stprobeset.db", "huex10sttranscriptcluster.db", "hugene10stprobeset.db", "hugene10sttranscriptcluster.db", "hugene11stprobeset.db", "hugene11sttranscriptcluster.db", "hugene20stprobeset.db", "hugene20sttranscriptcluster.db", "hugene21stprobeset.db", "hugene21sttranscriptcluster.db", "HuO22.db", "hwgcod.db", "IlluminaHumanMethylation27k.db", "illuminaHumanv1.db", "illuminaHumanv2.db", "illuminaHumanv2BeadID.db", "illuminaHumanv3.db", "illuminaHumanv4.db", "illuminaHumanWGDASLv3.db", "illuminaHumanWGDASLv4.db", "JazaeriMetaData.db", "KEGGlincs", "LAPOINTE.db", "lumiHumanAll.db", "meshr", "methyAnalysis", "Mulder2012", "Norway981.db", "nugohs1a520180.db", "OperonHumanV3.db", "PartheenMetaData.db", "pathview", "pedbarrayv10.db", "pedbarrayv9.db", "POCRCannotation.db", "rnaseqGene", "Roberts2005Annotation.db", "SHDZ.db", "TFEA.ChIP", "tRanslatome", "u133x3p.db", "variants" ], "Rank": 3, "suggestsMe": [ "AllelicImbalance", "annotate", "AnnotationDbi", "AnnotationFilter", "AnnotationForge", "AnnotationFuncs", "annotatr", "BiocCaseStudies", "BiocOncoTK", "BioCor", "BloodCancerMultiOmics2017", "bumphunter", "categoryCompare", "cellTree", "cgdv17", "chipenrich.data", "ChIPpeakAnno", "ChIPseeker", "CINdex", "clusterProfiler", "cnvGSA", "CRISPRseek", "crossmeta", "derfinderPlot", "DOSE", "edgeR", "eisa", "enrichplot", "esATAC", "FELLA", "FunciSNP", "GA4GHclient", "GA4GHshiny", "gage", "gCMAPWeb", "gCrisprTools", "GeneAnswers", "GenomicFeatures", "GenomicRanges", "globaltest", "gmapR", "GoogleGenomics", "goProfiles", "GOSemSim", "goseq", "GOstats", "gQTLstats", "graphite", "groHMM", "GSAR", "GSEABase", "GUIDEseq", "hpar", "HTSanalyzeR", "HTSeqGenie", "ideal", "InPAS", "InterMineR", "KEGGgraph", "limma", "miRLAB", "miRNAtap", "miRsponge", "MLP", "Onassis", "ontoProc", "oppar", "Organism.dplyr", "paxtoolsr", "pcaExplorer", "pcxn", "PGSEA", "Pigengene", "prostateCancerTaylor", "PSICQUIC", "PureCN", "R3CPET", "ReactomePA", "recount", "RefNet", "restfulSE", "RforProteomics", "RmiR", "RnBeads", "RpsiXML", "RTopper", "rtracklayer", "rTRM", "scde", "scmeth", "SigFuge", "singleCellTK", "tenXplore", "TFutils", "trackViewer", "VariantFiltering", "wiggleplotr" ], "importsMe": [ "attract", "bioCancer", "cellity", "chimeraviz", "chipenrich", "debrowser", "dSimer", "eegc", "EGSEA", "GDCRNATools", "geneAttribution", "geneXtendeR", "GOpro", "GOSim", "LINC", "MCbiclust", "MetaboSignal", "MIGSA", "mirIntegrator", "missMethyl", "NanoStringQCPro", "PathwaySplice", "RCAS", "rCGH", "recountWorkflow", "REMP", "rgsepd", "rTRMui", "scPipe", "SEPA", "SMITE", "SpidermiR", "StarBioTrek", "trena" ] }, "org.Mm.eg.db": { "Package": "org.Mm.eg.db", "Version": "3.6.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.41.4)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "1cb7de12010250de0b6fbbe799d653ea", "NeedsCompilation": "no", "Title": "Genome wide annotation for Mouse", "Description": "Genome wide annotation for Mouse, primarily based on mapping using Entrez Gene identifiers.", "biocViews": [ "AnnotationData", "Mus_musculus", "OrgDb", "mouseLLMappings" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Mus musculus", "source.ver": "src/contrib/org.Mm.eg.db_3.6.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "dependsOnMe": [ "annotation", "chipseqDB", "clariomsmousehttranscriptcluster.db", "clariomsmousetranscriptcluster.db", "illuminaMousev1.db", "illuminaMousev1p1.db", "illuminaMousev2.db", "lumiMouseAll.db", "m10kcod.db", "m20kcod.db", "mgu74a.db", "mgu74av2.db", "mgu74b.db", "mgu74bv2.db", "mgu74c.db", "mgu74cv2.db", "mguatlas5k.db", "mgug4104a.db", "mgug4120a.db", "mgug4121a.db", "mgug4122a.db", "mi16cod.db", "mm24kresogen.db", "MmAgilentDesign026655.db", "moe430a.db", "moe430b.db", "moex10stprobeset.db", "moex10sttranscriptcluster.db", "mogene10stprobeset.db", "mogene10sttranscriptcluster.db", "mogene11stprobeset.db", "mogene11sttranscriptcluster.db", "mogene20stprobeset.db", "mogene20sttranscriptcluster.db", "mogene21stprobeset.db", "mogene21sttranscriptcluster.db", "mouse4302.db", "mouse430a2.db", "mpedbarray.db", "mta10probeset.db", "mta10transcriptcluster.db", "mu11ksuba.db", "mu11ksubb.db", "Mu15v1.db", "mu19ksuba.db", "mu19ksubb.db", "mu19ksubc.db", "Mu22v3.db", "Mus.musculus", "mwgcod.db", "nugomm1a520177.db", "RnaSeqGeneEdgeRQL", "simpleSingleCell" ], "Rank": 4, "suggestsMe": [ "annotate", "annotatr", "CAGEfightR", "chipenrich.data", "compEpiTools", "csaw", "fgsea", "gCMAPWeb", "gCrisprTools", "GeneAnswers", "GenomicFeatures", "GenomicRanges", "girafe", "HTSanalyzeR", "InPAS", "iSEE", "isomiRs", "MAGeCKFlute", "MLP", "MmPalateMiRNA", "ontoProc", "Organism.dplyr", "pathview", "Pigengene", "RCAS", "ReportingTools", "restfulSE", "RnBeads", "RpsiXML", "rTRM", "scran", "singleCellTK" ], "importsMe": [ "cellity", "chimeraviz", "chipenrich", "debrowser", "eegc", "EGSEA", "geneXtendeR", "PathwaySplice", "rTRMui", "scPipe", "SEPA", "tenXplore" ] }, "org.Mmu.eg.db": { "Package": "org.Mmu.eg.db", "Version": "3.6.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.41.4)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "853996123a546f481aa78e910cd5b645", "NeedsCompilation": "no", "Title": "Genome wide annotation for Rhesus", "Description": "Genome wide annotation for Rhesus, primarily based on mapping using Entrez Gene identifiers.", "biocViews": [ "AnnotationData", "Macaca_mulatta", "OrgDb" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Macaca mulatta", "source.ver": "src/contrib/org.Mmu.eg.db_3.6.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 85, "importsMe": [ "geneXtendeR" ] }, "org.Pf.plasmo.db": { "Package": "org.Pf.plasmo.db", "Version": "3.6.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.41.4)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "e692197543ece711648407c5325c575b", "NeedsCompilation": "no", "Title": "Genome wide annotation for Malaria", "Description": "Genome wide annotation for Malaria, primarily based on mapping using Entrez Gene identifiers.", "biocViews": [ "AnnotationData", "OrgDb", "Plasmodium_falciparum" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Plasmodium falciparum", "source.ver": "src/contrib/org.Pf.plasmo.db_3.6.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 186 }, "org.Pt.eg.db": { "Package": "org.Pt.eg.db", "Version": "3.6.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.41.4)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "5979bcb9c7c8972c490010640862a17f", "NeedsCompilation": "no", "Title": "Genome wide annotation for Chimp", "Description": "Genome wide annotation for Chimp, primarily based on mapping using Entrez Gene identifiers.", "biocViews": [ "AnnotationData", "OrgDb", "Pan_troglodytes" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Pan troglodytes", "source.ver": "src/contrib/org.Pt.eg.db_3.6.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 127, "importsMe": [ "geneXtendeR" ] }, "org.Rn.eg.db": { "Package": "org.Rn.eg.db", "Version": "3.6.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.41.4)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "e6b4e03ec625bdfc7515ffacc4681659", "NeedsCompilation": "no", "Title": "Genome wide annotation for Rat", "Description": "Genome wide annotation for Rat, primarily based on mapping using Entrez Gene identifiers.", "biocViews": [ "AnnotationData", "OrgDb", "Rattus_norvegicus", "ratLLMappings" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Rattus norvegicus", "source.ver": "src/contrib/org.Rn.eg.db_3.6.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "dependsOnMe": [ "adme16cod.db", "clariomsrathttranscriptcluster.db", "clariomsrattranscriptcluster.db", "geneXtendeR", "illuminaRatv1.db", "lumiRatAll.db", "r10kcod.db", "rae230a.db", "rae230b.db", "raex10stprobeset.db", "raex10sttranscriptcluster.db", "ragene10stprobeset.db", "ragene10sttranscriptcluster.db", "ragene11stprobeset.db", "ragene11sttranscriptcluster.db", "ragene20stprobeset.db", "ragene20sttranscriptcluster.db", "ragene21stprobeset.db", "ragene21sttranscriptcluster.db", "rat2302.db", "Rattus.norvegicus", "rgu34a.db", "rgu34b.db", "rgu34c.db", "rguatlas4k.db", "rgug4105a.db", "rgug4130a.db", "rgug4131a.db", "ri16cod.db", "RnAgilentDesign028282.db", "rnu34.db", "rta10probeset.db", "rta10transcriptcluster.db", "rtu34.db", "rwgcod.db" ], "Rank": 16, "suggestsMe": [ "annotatr", "chipenrich.data", "GeneAnswers", "HTSanalyzeR", "MLP", "RnBeads", "RpsiXML" ], "importsMe": [ "chipenrich", "EGSEA" ] }, "org.Sc.sgd.db": { "Package": "org.Sc.sgd.db", "Version": "3.6.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.41.4)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "ba42c9278bf146817519a97723c018d6", "NeedsCompilation": "no", "Title": "Genome wide annotation for Yeast", "Description": "Genome wide annotation for Yeast, primarily based on mapping using ORF identifiers from SGD.", "biocViews": [ "AnnotationData", "OrgDb", "Saccharomyces_cerevisiae" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Saccharomyces cerevisiae", "source.ver": "src/contrib/org.Sc.sgd.db_3.6.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "dependsOnMe": [ "generegulation", "LiquidAssociation", "yeast2.db", "ygs98.db" ], "Rank": 22, "suggestsMe": [ "AnnotationDbi", "Category", "epiNEM", "fastLiquidAssociation", "FGNet", "GenomicRanges", "leeBamViews", "PCpheno", "ppiData", "ReportingTools", "RpsiXML", "SANTA", "SLGI", "yeastExpData" ], "importsMe": [ "apComplex", "geneXtendeR", "ScISI" ] }, "org.Ss.eg.db": { "Package": "org.Ss.eg.db", "Version": "3.6.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.41.4)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "77a060d5d281ec94dbcd2a7a623c3c24", "NeedsCompilation": "no", "Title": "Genome wide annotation for Pig", "Description": "Genome wide annotation for Pig, primarily based on mapping using Entrez Gene identifiers.", "biocViews": [ "AnnotationData", "OrgDb", "Sus_scrofa" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Sus scrofa", "source.ver": "src/contrib/org.Ss.eg.db_3.6.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "dependsOnMe": [ "porcine.db" ], "Rank": 68, "importsMe": [ "geneXtendeR" ] }, "org.Xl.eg.db": { "Package": "org.Xl.eg.db", "Version": "3.6.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.41.4)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "95a117ad0f02d392254c1fdb236bce4d", "NeedsCompilation": "no", "Title": "Genome wide annotation for Xenopus", "Description": "Genome wide annotation for Xenopus, primarily based on mapping using Entrez Gene identifiers.", "biocViews": [ "AnnotationData", "OrgDb", "Xenopus_laevis" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Xenopus laevis", "source.ver": "src/contrib/org.Xl.eg.db_3.6.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "dependsOnMe": [ "xlaevis.db" ], "Rank": 123, "importsMe": [ "geneXtendeR" ] }, "paeg1acdf": { "Package": "paeg1acdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "73af974112051db0f715518393e84726", "NeedsCompilation": "no", "Title": "paeg1acdf", "Description": "A package containing an environment representing the Pae_G1a.CDF file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Pseudomonas_aeruginosa", "cdf", "paeg1a" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/paeg1acdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 396 }, "paeg1aprobe": { "Package": "paeg1aprobe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "493fa1fc7b92a78c8114b65038113c42", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type paeg1a", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was P\\_aeg1a\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Pseudomonas_aeruginosa", "paeg1a", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/paeg1aprobe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "PANTHER.db": { "Package": "PANTHER.db", "Version": "1.0.4", "Depends": [ "AnnotationDbi", "utils", "methods", "RSQLite" ], "Suggests": [ "RUnit", "knitr", "BiocStyle" ], "License": "Artistic-2.0", "MD5sum": "bfd7362a4823bd3fda1bfab8e5b7908e", "NeedsCompilation": "no", "Title": "A set of annotation maps describing the entire PANTHER Gene Ontology", "Description": "A set of annotation maps describing the entire Gene Ontology assembled using data from PANTHER.", "biocViews": [ "Annotation", "AnnotationData", "Infrastructure" ], "Author": "Julius Muller", "Maintainer": "Julius Muller ", "VignetteBuilder": "knitr", "source.ver": "src/contrib/PANTHER.db_1.0.4.tar.gz", "vignettes": [ "vignettes/PANTHER.db/inst/doc/PANTHER.db.pdf" ], "vignetteTitles": [ "PANTHER.db: An annotation package to access the PANTHER Classification System" ], "hasREADME": false, "hasNEWS": true, "hasINSTALL": false, "hasLICENSE": false, "Rfiles": [ "vignettes/PANTHER.db/inst/doc/PANTHER.db.R" ], "Rank": 110, "importsMe": [ "gCrisprTools" ] }, "PartheenMetaData.db": { "Package": "PartheenMetaData.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Hs.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "1c9fd27e13a341b9aba9a235a67ce978", "NeedsCompilation": "no", "Title": "PartheenMetaData http://swegene.onk.lu.se Annotation Data (PartheenMetaData)", "Description": "PartheenMetaData http://swegene.onk.lu.se Annotation Data (PartheenMetaData) assembled using data from public repositories", "biocViews": [ "AnnotationData", "ChipDb", "Homo_sapiens", "Lund", "PartheenMetaData", "SwedenChip", "Swegene DNA Microarray Resource Centre" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Homo sapiens", "manufacturer": "Swegene DNA Microarray Resource Centre, Lund, Sweden", "source.ver": "src/contrib/PartheenMetaData.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 779 }, "pd.081229.hg18.promoter.medip.hx1": { "Package": "pd.081229.hg18.promoter.medip.hx1", "Version": "0.99.4", "Depends": [ "R (>= 2.11.0)", "methods", "RSQLite (>= 0.7-1)", "oligoClasses (>= 1.9.30)", "oligo (>= 1.11.18)", "DBI" ], "Imports": [ "Biostrings (>= 2.13.50)", "IRanges (>= 1.3.89)" ], "License": "Artistic-2.0", "MD5sum": "f3c240fa0d4503e94047be5ee323856b", "NeedsCompilation": "no", "Title": "Platform Design Info for NimbleGen 081229_hg18_promoter_medip_hx1", "Description": "Platform Design Info for NimbleGen 081229_hg18_promoter_medip_hx1", "biocViews": [ "AnnotationData" ], "Author": "Martin Aryee", "Maintainer": "Martin Aryee ", "source.ver": "src/contrib/pd.081229.hg18.promoter.medip.hx1_0.99.4.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 396 }, "pd.2006.07.18.hg18.refseq.promoter": { "Package": "pd.2006.07.18.hg18.refseq.promoter", "Version": "1.8.1", "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "License": "Artistic-2.0", "MD5sum": "00838332d75b82d212078a9957f495df", "NeedsCompilation": "no", "Title": "Platform Design Info for NimbleGen 2006-07-18_hg18_refseq_promoter", "Description": "Platform Design Info for NimbleGen 2006-07-18_hg18_refseq_promoter", "biocViews": [ "AnnotationData" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.2006.07.18.hg18.refseq.promoter_1.8.1.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "suggestsMe": [ "oligoData" ], "Rank": 319 }, "pd.2006.07.18.mm8.refseq.promoter": { "Package": "pd.2006.07.18.mm8.refseq.promoter", "Version": "0.99.3", "Depends": [ "R (>= 2.11.0)", "methods", "RSQLite (>= 0.7-1)", "oligoClasses (>= 1.9.30)", "oligo (>= 1.11.18)", "DBI" ], "Imports": [ "Biostrings (>= 2.13.50)", "IRanges (>= 1.3.89)" ], "License": "Artistic-2.0", "MD5sum": "084b0a6759fd96d1bc775dd4c66c42b0", "NeedsCompilation": "no", "Title": "Platform Design Info for NimbleGen 2006-07-18_mm8_refseq_promoter", "Description": "Platform Design Info for NimbleGen 2006-07-18_mm8_refseq_promoter", "biocViews": [ "AnnotationData" ], "Author": "Martin Aryee", "Maintainer": "Martin Aryee ", "source.ver": "src/contrib/pd.2006.07.18.mm8.refseq.promoter_0.99.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 396 }, "pd.2006.10.31.rn34.refseq.promoter": { "Package": "pd.2006.10.31.rn34.refseq.promoter", "Version": "0.99.3", "Depends": [ "R (>= 2.11.0)", "methods", "RSQLite (>= 0.7-1)", "oligoClasses (>= 1.9.30)", "oligo (>= 1.11.18)", "DBI" ], "Imports": [ "Biostrings (>= 2.13.50)", "IRanges (>= 1.3.89)" ], "License": "Artistic-2.0", "MD5sum": "ab5bb767ad29b213e5a969a5fc51ee7d", "NeedsCompilation": "no", "Title": "Platform Design Info for NimbleGen 2006-10-31_rn34_refseq_promoter", "Description": "Platform Design Info for NimbleGen 2006-10-31_rn34_refseq_promoter", "biocViews": [ "AnnotationData" ], "Author": "Martin Aryee", "Maintainer": "Martin Aryee ", "source.ver": "src/contrib/pd.2006.10.31.rn34.refseq.promoter_0.99.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 359 }, "pd.ag": { "Package": "pd.ag", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "21fb288536568ff010ad4847b671f9d6", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name AG", "Description": "Platform Design Info for The Manufacturer's Name AG", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.ag_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 591 }, "pd.aragene.1.0.st": { "Package": "pd.aragene.1.0.st", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "ff87a0793fd4b713c4a45b6c1d4a4977", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix AraGene-1_0-st", "Description": "Platform Design Info for Affymetrix AraGene-1_0-st", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.aragene.1.0.st_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 291 }, "pd.aragene.1.1.st": { "Package": "pd.aragene.1.1.st", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "828ad790eb2495e396d7fcd9bcbf9133", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix AraGene-1_1-st", "Description": "Platform Design Info for Affymetrix AraGene-1_1-st", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.aragene.1.1.st_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 337 }, "pd.ath1.121501": { "Package": "pd.ath1.121501", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "d7ed8640f0deac552e0083a091e72a72", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name ATH1-121501", "Description": "Platform Design Info for The Manufacturer's Name ATH1-121501", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.ath1.121501_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 306 }, "pd.barley1": { "Package": "pd.barley1", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "b8d11f5ad42e75f7a91931b46d449c1a", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name Barley1", "Description": "Platform Design Info for The Manufacturer's Name Barley1", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.barley1_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 396 }, "pd.bovgene.1.0.st": { "Package": "pd.bovgene.1.0.st", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "6e9747d13aee7825722562ccc49ad35f", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix BovGene-1_0-st", "Description": "Platform Design Info for Affymetrix BovGene-1_0-st", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.bovgene.1.0.st_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "pd.bovgene.1.1.st": { "Package": "pd.bovgene.1.1.st", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "342246c0a76755fcca458cd723b3e98e", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix BovGene-1_1-st", "Description": "Platform Design Info for Affymetrix BovGene-1_1-st", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.bovgene.1.1.st_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 396 }, "pd.bovine": { "Package": "pd.bovine", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "6c7026dba53b54b547b1f1e135d043b3", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name Bovine", "Description": "Platform Design Info for The Manufacturer's Name Bovine", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.bovine_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 396 }, "pd.bsubtilis": { "Package": "pd.bsubtilis", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "2261d8b0ec178beb432d71eafd90ec9a", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name Bsubtilis", "Description": "Platform Design Info for The Manufacturer's Name Bsubtilis", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.bsubtilis_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 529 }, "pd.cangene.1.0.st": { "Package": "pd.cangene.1.0.st", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "0a39d6378193e3f7d31a7210f6766eaf", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix CanGene-1_0-st", "Description": "Platform Design Info for Affymetrix CanGene-1_0-st", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.cangene.1.0.st_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "pd.cangene.1.1.st": { "Package": "pd.cangene.1.1.st", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "946074601e7bee72f3b3dd6ae6b3bc33", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix CanGene-1_1-st", "Description": "Platform Design Info for Affymetrix CanGene-1_1-st", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.cangene.1.1.st_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 529 }, "pd.canine": { "Package": "pd.canine", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "5b40fe9e40d0b7f36d338e413d121ba7", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name Canine", "Description": "Platform Design Info for The Manufacturer's Name Canine", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.canine_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 396 }, "pd.canine.2": { "Package": "pd.canine.2", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "bc918d1953a3c7ac7168b60a53405a93", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name Canine_2", "Description": "Platform Design Info for The Manufacturer's Name Canine_2", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.canine.2_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 396 }, "pd.celegans": { "Package": "pd.celegans", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "b90ea2e071522bb340c103a1c8270205", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name Celegans", "Description": "Platform Design Info for The Manufacturer's Name Celegans", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.celegans_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 359 }, "pd.charm.hg18.example": { "Package": "pd.charm.hg18.example", "Version": "0.99.4", "Depends": [ "R (>= 2.11.0)", "methods", "RSQLite (>= 0.7-1)", "oligoClasses (>= 1.9.30)", "oligo (>= 1.11.18)", "DBI" ], "Imports": [ "Biostrings (>= 2.29.2)", "IRanges (>= 1.19.5)" ], "License": "Artistic-2.0", "MD5sum": "e201d4281a23c202f57bae1135e226b4", "NeedsCompilation": "no", "Title": "Platform Design Info for NimbleGen charm_hg18_example", "Description": "Platform Design Info for NimbleGen charm_hg18_example", "biocViews": [ "AnnotationData" ], "Author": "Martin Aryee", "Maintainer": "Martin Aryee ", "source.ver": "src/contrib/pd.charm.hg18.example_0.99.4.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 244, "dependsOnMe": [ "charmData" ] }, "pd.chicken": { "Package": "pd.chicken", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "af79b6d0910621910e72ea374499e5eb", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name Chicken", "Description": "Platform Design Info for The Manufacturer's Name Chicken", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.chicken_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 319 }, "pd.chigene.1.0.st": { "Package": "pd.chigene.1.0.st", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "e37cb047678fabb1801109d4efd16773", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix ChiGene-1_0-st", "Description": "Platform Design Info for Affymetrix ChiGene-1_0-st", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.chigene.1.0.st_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 591 }, "pd.chigene.1.1.st": { "Package": "pd.chigene.1.1.st", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "bec602b45961607f5a4571977d54e015", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix ChiGene-1_1-st", "Description": "Platform Design Info for Affymetrix ChiGene-1_1-st", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.chigene.1.1.st_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "pd.chogene.2.0.st": { "Package": "pd.chogene.2.0.st", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "641718e3d172838185a200bac3d32433", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix CHOGene-2_0-st", "Description": "Platform Design Info for Affymetrix CHOGene-2_0-st", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.chogene.2.0.st_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 396 }, "pd.chogene.2.1.st": { "Package": "pd.chogene.2.1.st", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "ed25825e58a514cdde70b961bce9b4d7", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix CHOGene-2_1-st", "Description": "Platform Design Info for Affymetrix CHOGene-2_1-st", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.chogene.2.1.st_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "pd.citrus": { "Package": "pd.citrus", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "dee9b3298b84e7dd5152f48ad449b15a", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name Citrus", "Description": "Platform Design Info for The Manufacturer's Name Citrus", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.citrus_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "pd.clariom.d.human": { "Package": "pd.clariom.d.human", "Version": "3.14.1", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "9d3505af53cc7c99980f29c527f0f37d", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix Clariom_D_Human", "Description": "Platform Design Info for Affymetrix Clariom_D_Human", "biocViews": [ "AnnotationData", "oligo" ], "Author": "James W. MacDonald", "Maintainer": "James W. MacDonald ", "source.ver": "src/contrib/pd.clariom.d.human_3.14.1.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 191 }, "pd.clariom.s.human": { "Package": "pd.clariom.s.human", "Version": "3.14.1", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "797afe8a6a8041453a34ced3cce34884", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix Clariom_S_Human", "Description": "Platform Design Info for Affymetrix Clariom_S_Human", "biocViews": [ "AnnotationData", "oligo" ], "Author": "James W. MacDonald", "Maintainer": "James W. MacDonald ", "source.ver": "src/contrib/pd.clariom.s.human_3.14.1.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 195 }, "pd.clariom.s.human.ht": { "Package": "pd.clariom.s.human.ht", "Version": "3.14.1", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "90f910bea1b1aeb550a3f1bdd91d1a06", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix Clariom_S_Human_HT", "Description": "Platform Design Info for Affymetrix Clariom_S_Human_HT", "biocViews": [ "AnnotationData", "oligo" ], "Author": "James W. MacDonald", "Maintainer": "James W. MacDonald ", "source.ver": "src/contrib/pd.clariom.s.human.ht_3.14.1.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 268 }, "pd.clariom.s.mouse": { "Package": "pd.clariom.s.mouse", "Version": "3.14.1", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "e3e4ce2b22a78faf525dd6c0c0b2a42d", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix Clariom_S_Mouse", "Description": "Platform Design Info for Affymetrix Clariom_S_Mouse", "biocViews": [ "AnnotationData", "oligo" ], "Author": "James W. MacDonald", "Maintainer": "James W. MacDonald ", "source.ver": "src/contrib/pd.clariom.s.mouse_3.14.1.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 217 }, "pd.clariom.s.mouse.ht": { "Package": "pd.clariom.s.mouse.ht", "Version": "3.14.1", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "9cb6f77cf9666a0d54e1eacb904fd57c", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix Clariom_S_Mouse_HT", "Description": "Platform Design Info for Affymetrix Clariom_S_Mouse_HT", "biocViews": [ "AnnotationData", "oligo" ], "Author": "James W. MacDonald", "Maintainer": "James W. MacDonald ", "source.ver": "src/contrib/pd.clariom.s.mouse.ht_3.14.1.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 306 }, "pd.clariom.s.rat": { "Package": "pd.clariom.s.rat", "Version": "3.14.1", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "be464b3eaea8eb8bdbcca6047fce4dea", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix Clariom_S_Rat", "Description": "Platform Design Info for Affymetrix Clariom_S_Rat", "biocViews": [ "AnnotationData", "oligo" ], "Author": "James W. MacDonald", "Maintainer": "James W. MacDonald ", "source.ver": "src/contrib/pd.clariom.s.rat_3.14.1.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "pd.clariom.s.rat.ht": { "Package": "pd.clariom.s.rat.ht", "Version": "3.14.1", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "be901eb9e8830f3e5bedf154189a3743", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix Clariom_S_Rat_HT", "Description": "Platform Design Info for Affymetrix Clariom_S_Rat_HT", "biocViews": [ "AnnotationData", "oligo" ], "Author": "James W. MacDonald", "Maintainer": "James W. MacDonald ", "source.ver": "src/contrib/pd.clariom.s.rat.ht_3.14.1.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "pd.cotton": { "Package": "pd.cotton", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "78c408902bcefb8c695119767534b393", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name Cotton", "Description": "Platform Design Info for The Manufacturer's Name Cotton", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.cotton_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 529 }, "pd.cyngene.1.0.st": { "Package": "pd.cyngene.1.0.st", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "784fac6cc92a0fe46dae32c9b737812a", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix CynGene-1_0-st", "Description": "Platform Design Info for Affymetrix CynGene-1_0-st", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.cyngene.1.0.st_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "pd.cyngene.1.1.st": { "Package": "pd.cyngene.1.1.st", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "a6217267e3e08a15f70c600918c7d4f6", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix CynGene-1_1-st", "Description": "Platform Design Info for Affymetrix CynGene-1_1-st", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.cyngene.1.1.st_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 529 }, "pd.cyrgene.1.0.st": { "Package": "pd.cyrgene.1.0.st", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "63228c07d3d16d6c62e9c0e83f10a855", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix CyRGene-1_0-st", "Description": "Platform Design Info for Affymetrix CyRGene-1_0-st", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.cyrgene.1.0.st_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 529 }, "pd.cyrgene.1.1.st": { "Package": "pd.cyrgene.1.1.st", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "dbe3bb580b96aaddcc597de45159320d", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix CyRGene-1_1-st", "Description": "Platform Design Info for Affymetrix CyRGene-1_1-st", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.cyrgene.1.1.st_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "pd.cytogenetics.array": { "Package": "pd.cytogenetics.array", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "8c359ff56a9a558d370dc9a6a54218e0", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix Cytogenetics_Array", "Description": "Platform Design Info for Affymetrix Cytogenetics_Array", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.cytogenetics.array_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "pd.drogene.1.0.st": { "Package": "pd.drogene.1.0.st", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "67f92a97a5b78a95693edfdd32b67e93", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix DroGene-1_0-st", "Description": "Platform Design Info for Affymetrix DroGene-1_0-st", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.drogene.1.0.st_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 337 }, "pd.drogene.1.1.st": { "Package": "pd.drogene.1.1.st", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "5c63236ea91390d49dbabea63a48f0a2", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix DroGene-1_1-st", "Description": "Platform Design Info for Affymetrix DroGene-1_1-st", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.drogene.1.1.st_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 337 }, "pd.drosgenome1": { "Package": "pd.drosgenome1", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "59c1a37a7d6a43fc70ff8756bf1195ef", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name DrosGenome1", "Description": "Platform Design Info for The Manufacturer's Name DrosGenome1", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.drosgenome1_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 529 }, "pd.drosophila.2": { "Package": "pd.drosophila.2", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "ddb821e35e722af8dcf0807c6da4fac1", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name Drosophila_2", "Description": "Platform Design Info for The Manufacturer's Name Drosophila_2", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.drosophila.2_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 319 }, "pd.e.coli.2": { "Package": "pd.e.coli.2", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "9176faa60a0c252a815b2a74d2f63dd4", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name E_coli_2", "Description": "Platform Design Info for The Manufacturer's Name E_coli_2", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.e.coli.2_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 359 }, "pd.ecoli": { "Package": "pd.ecoli", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "077e91b2567a32780305f0fb6b126fe9", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name Ecoli", "Description": "Platform Design Info for The Manufacturer's Name Ecoli", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.ecoli_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 359 }, "pd.ecoli.asv2": { "Package": "pd.ecoli.asv2", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "d789ddf5a178a9a50c5587ee3ab294a4", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name Ecoli_ASv2", "Description": "Platform Design Info for The Manufacturer's Name Ecoli_ASv2", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.ecoli.asv2_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 359 }, "pd.elegene.1.0.st": { "Package": "pd.elegene.1.0.st", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "b6110c58d5964703c7117e5e0668c901", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix EleGene-1_0-st", "Description": "Platform Design Info for Affymetrix EleGene-1_0-st", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.elegene.1.0.st_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 337 }, "pd.elegene.1.1.st": { "Package": "pd.elegene.1.1.st", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "1dbe166ea347a5a7e240db925d2081c7", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix EleGene-1_1-st", "Description": "Platform Design Info for Affymetrix EleGene-1_1-st", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.elegene.1.1.st_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 337 }, "pd.equgene.1.0.st": { "Package": "pd.equgene.1.0.st", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "3448f36fdb899f04702be37ffab4c4c7", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix EquGene-1_0-st", "Description": "Platform Design Info for Affymetrix EquGene-1_0-st", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.equgene.1.0.st_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "pd.equgene.1.1.st": { "Package": "pd.equgene.1.1.st", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "bed32525513ce25f14d433ce805e7d6c", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix EquGene-1_1-st", "Description": "Platform Design Info for Affymetrix EquGene-1_1-st", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.equgene.1.1.st_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 359 }, "pd.feinberg.hg18.me.hx1": { "Package": "pd.feinberg.hg18.me.hx1", "Version": "0.99.3", "Depends": [ "R (>= 2.11.0)", "methods", "RSQLite (>= 0.7-1)", "oligoClasses (>= 1.9.30)", "oligo (>= 1.11.18)", "DBI" ], "Imports": [ "Biostrings (>= 2.13.50)", "IRanges (>= 1.3.89)" ], "License": "Artistic-2.0", "MD5sum": "b6eeaf79671bab6f597965009516ce57", "NeedsCompilation": "no", "Title": "Platform Design Info for NimbleGen feinberg_hg18_me_hx1", "Description": "Platform Design Info for NimbleGen feinberg_hg18_me_hx1", "biocViews": [ "AnnotationData" ], "Author": "Martin Aryee", "Maintainer": "Martin Aryee ", "source.ver": "src/contrib/pd.feinberg.hg18.me.hx1_0.99.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 396 }, "pd.feinberg.mm8.me.hx1": { "Package": "pd.feinberg.mm8.me.hx1", "Version": "0.99.3", "Depends": [ "R (>= 2.11.0)", "methods", "RSQLite (>= 0.7-1)", "oligoClasses (>= 1.9.30)", "oligo (>= 1.11.18)", "DBI" ], "Imports": [ "Biostrings (>= 2.13.50)", "IRanges (>= 1.3.89)" ], "License": "Artistic-2.0", "MD5sum": "7332102b69fc9ee087f52d3cdc311d00", "NeedsCompilation": "no", "Title": "Platform Design Info for NimbleGen feinberg_mm8_me_hx1", "Description": "Platform Design Info for NimbleGen feinberg_mm8_me_hx1", "biocViews": [ "AnnotationData" ], "Author": "Martin Aryee", "Maintainer": "Martin Aryee ", "source.ver": "src/contrib/pd.feinberg.mm8.me.hx1_0.99.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 396 }, "pd.felgene.1.0.st": { "Package": "pd.felgene.1.0.st", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "b7ac0a5cbde5f248aac5d0a7422bd88d", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix FelGene-1_0-st", "Description": "Platform Design Info for Affymetrix FelGene-1_0-st", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.felgene.1.0.st_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 396 }, "pd.felgene.1.1.st": { "Package": "pd.felgene.1.1.st", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "734807a7f3608f6c44c76df7eee04c99", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix FelGene-1_1-st", "Description": "Platform Design Info for Affymetrix FelGene-1_1-st", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.felgene.1.1.st_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 359 }, "pd.fingene.1.0.st": { "Package": "pd.fingene.1.0.st", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "b79e4f8a52cad3b62e32401bbe74603d", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix FinGene-1_0-st", "Description": "Platform Design Info for Affymetrix FinGene-1_0-st", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.fingene.1.0.st_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "pd.fingene.1.1.st": { "Package": "pd.fingene.1.1.st", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "29030b14a0e8f8073874fb694a8c0c09", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix FinGene-1_1-st", "Description": "Platform Design Info for Affymetrix FinGene-1_1-st", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.fingene.1.1.st_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 529 }, "pd.genomewidesnp.5": { "Package": "pd.genomewidesnp.5", "Version": "3.14.1", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "d02255c861e82fca6a7445ada0c69e5d", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix GenomeWideSNP_5", "Description": "Platform Design Info for Affymetrix GenomeWideSNP_5", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.genomewidesnp.5_3.14.1.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 200, "suggestsMe": [ "cn.farms", "oligoClasses" ] }, "pd.genomewidesnp.6": { "Package": "pd.genomewidesnp.6", "Version": "3.14.1", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "6e5369234e251c763f4f6c0220fbcb0c", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix GenomeWideSNP_6", "Description": "Platform Design Info for Affymetrix GenomeWideSNP_6", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.genomewidesnp.6_3.14.1.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 138, "suggestsMe": [ "CINdex", "cn.farms", "oligoClasses" ] }, "pd.guigene.1.0.st": { "Package": "pd.guigene.1.0.st", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "29fe31499931836af72ddd0c7d06acfa", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix GuiGene-1_0-st", "Description": "Platform Design Info for Affymetrix GuiGene-1_0-st", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.guigene.1.0.st_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 396 }, "pd.guigene.1.1.st": { "Package": "pd.guigene.1.1.st", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "aa3e0389c596a3676322104de5ad2358", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix GuiGene-1_1-st", "Description": "Platform Design Info for Affymetrix GuiGene-1_1-st", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.guigene.1.1.st_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "pd.hc.g110": { "Package": "pd.hc.g110", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "5c5418c588ed28e2fa088c7952c48b91", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name HC_G110", "Description": "Platform Design Info for The Manufacturer's Name HC_G110", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.hc.g110_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 396 }, "pd.hg.focus": { "Package": "pd.hg.focus", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "a89f344ae7ff8061a8e7968f155f4bcf", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name HG-Focus", "Description": "Platform Design Info for The Manufacturer's Name HG-Focus", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.hg.focus_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 337 }, "pd.hg.u133.plus.2": { "Package": "pd.hg.u133.plus.2", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "8a87aa63c04e84266962bdde5226c06c", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name HG-U133_Plus_2", "Description": "Platform Design Info for The Manufacturer's Name HG-U133_Plus_2", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.hg.u133.plus.2_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 63 }, "pd.hg.u133a": { "Package": "pd.hg.u133a", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "05b4521f65ab294a5040a0c60198d22c", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name HG-U133A", "Description": "Platform Design Info for The Manufacturer's Name HG-U133A", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.hg.u133a_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 127 }, "pd.hg.u133a.2": { "Package": "pd.hg.u133a.2", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "a7941473bf081831fad4f4412023d9ee", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name HG-U133A_2", "Description": "Platform Design Info for The Manufacturer's Name HG-U133A_2", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.hg.u133a.2_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 164 }, "pd.hg.u133a.tag": { "Package": "pd.hg.u133a.tag", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "e090383098d6e1062b290889fba065d5", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name HG-U133A_tag", "Description": "Platform Design Info for The Manufacturer's Name HG-U133A_tag", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.hg.u133a.tag_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "pd.hg.u133b": { "Package": "pd.hg.u133b", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "c5eac82ad7480571b9f2b442b4a8faa6", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name HG-U133B", "Description": "Platform Design Info for The Manufacturer's Name HG-U133B", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.hg.u133b_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 261 }, "pd.hg.u219": { "Package": "pd.hg.u219", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "dab073d315af47ff3001c72a6d1e7972", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name HG-U219", "Description": "Platform Design Info for The Manufacturer's Name HG-U219", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.hg.u219_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 238 }, "pd.hg.u95a": { "Package": "pd.hg.u95a", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "a9ad7d6a085e0e3ed7623902e7810da0", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name HG_U95A", "Description": "Platform Design Info for The Manufacturer's Name HG_U95A", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.hg.u95a_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 261, "suggestsMe": [ "SCAN.UPC" ] }, "pd.hg.u95av2": { "Package": "pd.hg.u95av2", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "3a4182b529bc07ec91277a95b1462468", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name HG_U95Av2", "Description": "Platform Design Info for The Manufacturer's Name HG_U95Av2", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.hg.u95av2_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "suggestsMe": [ "oligo", "oligoData" ], "Rank": 148 }, "pd.hg.u95b": { "Package": "pd.hg.u95b", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "a7f10f91e920e191c5009fac8ca79c24", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name HG_U95B", "Description": "Platform Design Info for The Manufacturer's Name HG_U95B", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.hg.u95b_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 396 }, "pd.hg.u95c": { "Package": "pd.hg.u95c", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "85655bf7a9ecd7aaa867e05899c5e3e4", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name HG_U95C", "Description": "Platform Design Info for The Manufacturer's Name HG_U95C", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.hg.u95c_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 359 }, "pd.hg.u95d": { "Package": "pd.hg.u95d", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "946701ecfc9cccb46aaeb57a4d6fe1c5", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name HG_U95D", "Description": "Platform Design Info for The Manufacturer's Name HG_U95D", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.hg.u95d_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 337 }, "pd.hg.u95e": { "Package": "pd.hg.u95e", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "9295e2fd1b4be6ff58477ea5a5de45ee", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name HG_U95E", "Description": "Platform Design Info for The Manufacturer's Name HG_U95E", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.hg.u95e_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "pd.hg18.60mer.expr": { "Package": "pd.hg18.60mer.expr", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "ee8d3813f74edce4e796933aa63999fb", "NeedsCompilation": "no", "Title": "Platform Design Info for NimbleGen hg18_60mer_expr", "Description": "Platform Design Info for NimbleGen hg18_60mer_expr", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.hg18.60mer.expr_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "suggestsMe": [ "oligo", "oligoData" ], "Rank": 206 }, "pd.ht.hg.u133.plus.pm": { "Package": "pd.ht.hg.u133.plus.pm", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "5b1c3dd0ab3f8b21154982c197512a7c", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name HT_HG-U133_Plus_PM", "Description": "Platform Design Info for The Manufacturer's Name HT_HG-U133_Plus_PM", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.ht.hg.u133.plus.pm_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 268 }, "pd.ht.hg.u133a": { "Package": "pd.ht.hg.u133a", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "80a82f43083f95e1e9f5e2e2da2e288e", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name HT_HG-U133A", "Description": "Platform Design Info for The Manufacturer's Name HT_HG-U133A", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.ht.hg.u133a_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 255 }, "pd.ht.mg.430a": { "Package": "pd.ht.mg.430a", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "65ea4fae22d21ad70998ba3ea034dcc0", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name HT_MG-430A", "Description": "Platform Design Info for The Manufacturer's Name HT_MG-430A", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.ht.mg.430a_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 255 }, "pd.hta.2.0": { "Package": "pd.hta.2.0", "Version": "3.12.2", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "8e13f85ece49c38da73eaf7b2247f5f0", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix HTA-2_0", "Description": "Platform Design Info for Affymetrix HTA-2_0", "biocViews": [ "AnnotationData", "oligo" ], "Author": "James W. MacDonald", "Maintainer": "James W. MacDonald ", "source.ver": "src/contrib/pd.hta.2.0_3.12.2.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 112 }, "pd.hu6800": { "Package": "pd.hu6800", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "9a3a3edde6d6f31b9e90dc32aa68875d", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name Hu6800", "Description": "Platform Design Info for The Manufacturer's Name Hu6800", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.hu6800_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "pd.huex.1.0.st.v2": { "Package": "pd.huex.1.0.st.v2", "Version": "3.14.1", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "f4c4836c53447890b75b012efbdef3e9", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix HuEx-1_0-st-v2", "Description": "Platform Design Info for Affymetrix HuEx-1_0-st-v2", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.huex.1.0.st.v2_3.14.1.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "suggestsMe": [ "frmaTools", "oligo", "oligoData" ], "Rank": 88 }, "pd.hugene.1.0.st.v1": { "Package": "pd.hugene.1.0.st.v1", "Version": "3.14.1", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "8cb24c351aee5bf216180e4b19742506", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix HuGene-1_0-st-v1", "Description": "Platform Design Info for Affymetrix HuGene-1_0-st-v1", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.hugene.1.0.st.v1_3.14.1.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "suggestsMe": [ "frmaTools", "mimager", "oligo", "oligoData" ], "Rank": 52 }, "pd.hugene.1.1.st.v1": { "Package": "pd.hugene.1.1.st.v1", "Version": "3.14.1", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "7a17ee4f7d258792be1d21be7d03deb0", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix HuGene-1_1-st-v1", "Description": "Platform Design Info for Affymetrix HuGene-1_1-st-v1", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.hugene.1.1.st.v1_3.14.1.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 165 }, "pd.hugene.2.0.st": { "Package": "pd.hugene.2.0.st", "Version": "3.14.1", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "e484209aa0c2a839c3445d91c1a799ce", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix HuGene-2_0-st", "Description": "Platform Design Info for Affymetrix HuGene-2_0-st", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.hugene.2.0.st_3.14.1.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 93 }, "pd.hugene.2.1.st": { "Package": "pd.hugene.2.1.st", "Version": "3.14.1", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "164227f10b87f87059e4ae27b40f5238", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix HuGene-2_1-st", "Description": "Platform Design Info for Affymetrix HuGene-2_1-st", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.hugene.2.1.st_3.14.1.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 189 }, "pd.maize": { "Package": "pd.maize", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "a1689518c8525d3dfa97e870f90b7a7b", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name Maize", "Description": "Platform Design Info for The Manufacturer's Name Maize", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.maize_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "pd.mapping250k.nsp": { "Package": "pd.mapping250k.nsp", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "2786d00e1d621a9c415a599b4afe838b", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix Mapping250K_Nsp", "Description": "Platform Design Info for Affymetrix Mapping250K_Nsp", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.mapping250k.nsp_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 230, "suggestsMe": [ "cn.farms", "ITALICS", "oligoClasses" ] }, "pd.mapping250k.sty": { "Package": "pd.mapping250k.sty", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "0db5992855eaf9b8f61f8bc2e57ef347", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix Mapping250K_Sty", "Description": "Platform Design Info for Affymetrix Mapping250K_Sty", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.mapping250k.sty_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 230, "suggestsMe": [ "cn.farms", "ITALICS", "oligoClasses" ] }, "pd.mapping50k.hind240": { "Package": "pd.mapping50k.hind240", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "83615dcb01eb381f0c69e07504809094", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix Mapping50K_Hind240", "Description": "Platform Design Info for Affymetrix Mapping50K_Hind240", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.mapping50k.hind240_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 233, "suggestsMe": [ "ITALICS", "oligoClasses" ] }, "pd.mapping50k.xba240": { "Package": "pd.mapping50k.xba240", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "eb0f9250fe0d7b590ca9938fee88f2e7", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix Mapping50K_Xba240", "Description": "Platform Design Info for Affymetrix Mapping50K_Xba240", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.mapping50k.xba240_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "suggestsMe": [ "oligo", "oligoClasses", "oligoData" ], "Rank": 126, "dependsOnMe": [ "ITALICS" ] }, "pd.margene.1.0.st": { "Package": "pd.margene.1.0.st", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "f670b192e4b453f13bb7cae154b5de42", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix MarGene-1_0-st", "Description": "Platform Design Info for Affymetrix MarGene-1_0-st", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.margene.1.0.st_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 529 }, "pd.margene.1.1.st": { "Package": "pd.margene.1.1.st", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "efd71aeb9c5ab36c2ddeccf9cb66ddec", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix MarGene-1_1-st", "Description": "Platform Design Info for Affymetrix MarGene-1_1-st", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.margene.1.1.st_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "pd.medgene.1.0.st": { "Package": "pd.medgene.1.0.st", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "2a0048ccd5310ec5c45bb691f3c25885", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix MedGene-1_0-st", "Description": "Platform Design Info for Affymetrix MedGene-1_0-st", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.medgene.1.0.st_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 359 }, "pd.medgene.1.1.st": { "Package": "pd.medgene.1.1.st", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "d96894cfea509734af62110311100142", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix MedGene-1_1-st", "Description": "Platform Design Info for Affymetrix MedGene-1_1-st", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.medgene.1.1.st_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 529 }, "pd.medicago": { "Package": "pd.medicago", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "0e3f00777919374619a9dc8244167068", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name Medicago", "Description": "Platform Design Info for The Manufacturer's Name Medicago", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.medicago_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 529 }, "pd.mg.u74a": { "Package": "pd.mg.u74a", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "a855c7d2b80e9b8f9bbc1a3f83aca799", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name MG_U74A", "Description": "Platform Design Info for The Manufacturer's Name MG_U74A", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.mg.u74a_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 396 }, "pd.mg.u74av2": { "Package": "pd.mg.u74av2", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "01c6e4da9c2ad0f1939482284dd5b421", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name MG_U74Av2", "Description": "Platform Design Info for The Manufacturer's Name MG_U74Av2", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.mg.u74av2_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 278 }, "pd.mg.u74b": { "Package": "pd.mg.u74b", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "47bb81abaceba6dfaab3e0987f28706c", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name MG_U74B", "Description": "Platform Design Info for The Manufacturer's Name MG_U74B", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.mg.u74b_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 396 }, "pd.mg.u74bv2": { "Package": "pd.mg.u74bv2", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "dbb6cd5b16bd5cafbf654744bc2d5c5c", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name MG_U74Bv2", "Description": "Platform Design Info for The Manufacturer's Name MG_U74Bv2", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.mg.u74bv2_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 529 }, "pd.mg.u74c": { "Package": "pd.mg.u74c", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "01f10eae99481f03d1d5a6a2c2f01733", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name MG_U74C", "Description": "Platform Design Info for The Manufacturer's Name MG_U74C", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.mg.u74c_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "pd.mg.u74cv2": { "Package": "pd.mg.u74cv2", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "b60943b90b95a24fcf93f8c245fd88be", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name MG_U74Cv2", "Description": "Platform Design Info for The Manufacturer's Name MG_U74Cv2", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.mg.u74cv2_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 396 }, "pd.mirna.1.0": { "Package": "pd.mirna.1.0", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "8dfeb82a9da6d6f73e5fb716a2867a34", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name miRNA-1_0", "Description": "Platform Design Info for The Manufacturer's Name miRNA-1_0", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.mirna.1.0_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 337 }, "pd.mirna.2.0": { "Package": "pd.mirna.2.0", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "aab53cbc62fbd7727ca0303aeb1dca13", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix miRNA-2_0", "Description": "Platform Design Info for Affymetrix miRNA-2_0", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.mirna.2.0_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 396 }, "pd.mirna.3.0": { "Package": "pd.mirna.3.0", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "1265f1969c618b3b5121e6a77ba57009", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix miRNA-3_0", "Description": "Platform Design Info for Affymetrix miRNA-3_0", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.mirna.3.0_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 268 }, "pd.mirna.3.1": { "Package": "pd.mirna.3.1", "Version": "3.8.1", "Depends": [ "R (>= 2.15.0)", "methods", "RSQLite (>= 0.11.1)", "oligoClasses (>= 1.19.41)", "oligo (>= 1.21.5)", "DBI" ], "Imports": [ "Biostrings (>= 2.25.12)", "IRanges (>= 1.15.43)" ], "License": "Artistic-2.0", "MD5sum": "296b3584ee5e9416c9018353d3e29c6c", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix miRNA-3_1", "Description": "Platform Design Info for Affymetrix miRNA-3_1", "biocViews": [ "AnnotationData" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.mirna.3.1_3.8.1.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "pd.mirna.4.0": { "Package": "pd.mirna.4.0", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "cae1a18c02aaa20a2f05172103e9d938", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix miRNA-4_0", "Description": "Platform Design Info for Affymetrix miRNA-4_0", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.mirna.4.0_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 200 }, "pd.moe430a": { "Package": "pd.moe430a", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "f9a7cb62140e42c2a82177548a1c73fb", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name MOE430A", "Description": "Platform Design Info for The Manufacturer's Name MOE430A", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.moe430a_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 306 }, "pd.moe430b": { "Package": "pd.moe430b", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "c19d2ee5e7e87703cf73afa33a5f3156", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name MOE430B", "Description": "Platform Design Info for The Manufacturer's Name MOE430B", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.moe430b_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 396 }, "pd.moex.1.0.st.v1": { "Package": "pd.moex.1.0.st.v1", "Version": "3.14.1", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "57427e63b2d44258c12d796eada1897b", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix MoEx-1_0-st-v1", "Description": "Platform Design Info for Affymetrix MoEx-1_0-st-v1", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.moex.1.0.st.v1_3.14.1.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 238 }, "pd.mogene.1.0.st.v1": { "Package": "pd.mogene.1.0.st.v1", "Version": "3.14.1", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "c3767385af3b9a120c777adb6d6e3364", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix MoGene-1_0-st-v1", "Description": "Platform Design Info for Affymetrix MoGene-1_0-st-v1", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.mogene.1.0.st.v1_3.14.1.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 76 }, "pd.mogene.1.1.st.v1": { "Package": "pd.mogene.1.1.st.v1", "Version": "3.14.1", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "3d6c5d29e4d8a0b0152e109b68f82c37", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix MoGene-1_1-st-v1", "Description": "Platform Design Info for Affymetrix MoGene-1_1-st-v1", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.mogene.1.1.st.v1_3.14.1.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 255 }, "pd.mogene.2.0.st": { "Package": "pd.mogene.2.0.st", "Version": "3.14.1", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "71326d6bd85de02490171696f923d053", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix MoGene-2_0-st", "Description": "Platform Design Info for Affymetrix MoGene-2_0-st", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.mogene.2.0.st_3.14.1.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 97 }, "pd.mogene.2.1.st": { "Package": "pd.mogene.2.1.st", "Version": "3.14.1", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "2c7fc5644eae98359cb945ff16d072a2", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix MoGene-2_1-st", "Description": "Platform Design Info for Affymetrix MoGene-2_1-st", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.mogene.2.1.st_3.14.1.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 246 }, "pd.mouse430.2": { "Package": "pd.mouse430.2", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "7f37397a57b06d15101ef86fa6242ca4", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name Mouse430_2", "Description": "Platform Design Info for The Manufacturer's Name Mouse430_2", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.mouse430.2_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 169 }, "pd.mouse430a.2": { "Package": "pd.mouse430a.2", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "0c28f564a1fa23f59c936d42c156796d", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name Mouse430A_2", "Description": "Platform Design Info for The Manufacturer's Name Mouse430A_2", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.mouse430a.2_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 306 }, "pd.mta.1.0": { "Package": "pd.mta.1.0", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "0f737b4f1f1353733e56e2df637f554b", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix MTA-1_0", "Description": "Platform Design Info for Affymetrix MTA-1_0", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.mta.1.0_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 238 }, "pd.mu11ksuba": { "Package": "pd.mu11ksuba", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "56be58b3f444ccb9572dc4c3882964b2", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name Mu11KsubA", "Description": "Platform Design Info for The Manufacturer's Name Mu11KsubA", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.mu11ksuba_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 529 }, "pd.mu11ksubb": { "Package": "pd.mu11ksubb", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "c45b0ebe777b99cec38499826cc1b457", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name Mu11KsubB", "Description": "Platform Design Info for The Manufacturer's Name Mu11KsubB", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.mu11ksubb_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 529 }, "pd.nugo.hs1a520180": { "Package": "pd.nugo.hs1a520180", "Version": "3.4.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "88a836472f0f9aab2e1d54e4bad7d6af", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name NuGO_Hs1a520180", "Description": "Platform Design Info for The Manufacturer's Name NuGO_Hs1a520180", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Philip de Groot", "Maintainer": "Philip de Groot ", "source.ver": "src/contrib/pd.nugo.hs1a520180_3.4.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 591 }, "pd.nugo.mm1a520177": { "Package": "pd.nugo.mm1a520177", "Version": "3.4.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "5cd64895eaddaf4cae1c48db9468c079", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name NuGO_Mm1a520177", "Description": "Platform Design Info for The Manufacturer's Name NuGO_Mm1a520177", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Philip de Groot", "Maintainer": "Philip de Groot ", "source.ver": "src/contrib/pd.nugo.mm1a520177_3.4.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "pd.ovigene.1.0.st": { "Package": "pd.ovigene.1.0.st", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "88cfedfe10dd357539305051a69d31a1", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix OviGene-1_0-st", "Description": "Platform Design Info for Affymetrix OviGene-1_0-st", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.ovigene.1.0.st_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 529 }, "pd.ovigene.1.1.st": { "Package": "pd.ovigene.1.1.st", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "d6158cacd32a1892975fddd8dc8bb3f2", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix OviGene-1_1-st", "Description": "Platform Design Info for Affymetrix OviGene-1_1-st", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.ovigene.1.1.st_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 396 }, "pd.pae.g1a": { "Package": "pd.pae.g1a", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "d96462eb35c63b30772bccae2a27a8cd", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name Pae_G1a", "Description": "Platform Design Info for The Manufacturer's Name Pae_G1a", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.pae.g1a_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 529 }, "pd.plasmodium.anopheles": { "Package": "pd.plasmodium.anopheles", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "ae55b1451ceaed951f68213c0433f3d0", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name Plasmodium_Anopheles", "Description": "Platform Design Info for The Manufacturer's Name Plasmodium_Anopheles", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.plasmodium.anopheles_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 529 }, "pd.poplar": { "Package": "pd.poplar", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "9c33b7528e5a47654aeacf61b71058a8", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name Poplar", "Description": "Platform Design Info for The Manufacturer's Name Poplar", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.poplar_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 591 }, "pd.porcine": { "Package": "pd.porcine", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "5df404babadb1d6faef73e249c819a72", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name Porcine", "Description": "Platform Design Info for The Manufacturer's Name Porcine", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.porcine_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 359 }, "pd.porgene.1.0.st": { "Package": "pd.porgene.1.0.st", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "203fc56b0e2904fa7063c4a325e038f1", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix PorGene-1_0-st", "Description": "Platform Design Info for Affymetrix PorGene-1_0-st", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.porgene.1.0.st_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 396 }, "pd.porgene.1.1.st": { "Package": "pd.porgene.1.1.st", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "3a31d325861925a7428241207c461a1d", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix PorGene-1_1-st", "Description": "Platform Design Info for Affymetrix PorGene-1_1-st", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.porgene.1.1.st_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "pd.rabgene.1.0.st": { "Package": "pd.rabgene.1.0.st", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "7f1e33f4767a4c4653bdaff2b79989a0", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix RabGene-1_0-st", "Description": "Platform Design Info for Affymetrix RabGene-1_0-st", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.rabgene.1.0.st_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 396 }, "pd.rabgene.1.1.st": { "Package": "pd.rabgene.1.1.st", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "2492695661309f5e6628612685460ee5", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix RabGene-1_1-st", "Description": "Platform Design Info for Affymetrix RabGene-1_1-st", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.rabgene.1.1.st_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "pd.rae230a": { "Package": "pd.rae230a", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "fa4a1c29d3457b1db82b1010c5f72412", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name RAE230A", "Description": "Platform Design Info for The Manufacturer's Name RAE230A", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.rae230a_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "pd.rae230b": { "Package": "pd.rae230b", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "10e2e70bb7538119127cd65f636f93b6", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name RAE230B", "Description": "Platform Design Info for The Manufacturer's Name RAE230B", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.rae230b_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 591 }, "pd.raex.1.0.st.v1": { "Package": "pd.raex.1.0.st.v1", "Version": "3.14.1", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "e2160b549f63ffcc9222d88d82d4d393", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix RaEx-1_0-st-v1", "Description": "Platform Design Info for Affymetrix RaEx-1_0-st-v1", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.raex.1.0.st.v1_3.14.1.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "pd.ragene.1.0.st.v1": { "Package": "pd.ragene.1.0.st.v1", "Version": "3.14.1", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "122cb69603e705218d01d70f48e90cad", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix RaGene-1_0-st-v1", "Description": "Platform Design Info for Affymetrix RaGene-1_0-st-v1", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.ragene.1.0.st.v1_3.14.1.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 319 }, "pd.ragene.1.1.st.v1": { "Package": "pd.ragene.1.1.st.v1", "Version": "3.14.1", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "7301ab6472849395ccb800c39807e969", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix RaGene-1_1-st-v1", "Description": "Platform Design Info for Affymetrix RaGene-1_1-st-v1", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.ragene.1.1.st.v1_3.14.1.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "pd.ragene.2.0.st": { "Package": "pd.ragene.2.0.st", "Version": "3.14.1", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "37157b09f009fef368b54e47711c313b", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix RaGene-2_0-st", "Description": "Platform Design Info for Affymetrix RaGene-2_0-st", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.ragene.2.0.st_3.14.1.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 278 }, "pd.ragene.2.1.st": { "Package": "pd.ragene.2.1.st", "Version": "3.14.1", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "53adfa5ff2c7e466da83b807dbc7b237", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix RaGene-2_1-st", "Description": "Platform Design Info for Affymetrix RaGene-2_1-st", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.ragene.2.1.st_3.14.1.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "pd.rat230.2": { "Package": "pd.rat230.2", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "286b1a7868ef6c795ebeb6dd8a5d5920", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name Rat230_2", "Description": "Platform Design Info for The Manufacturer's Name Rat230_2", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.rat230.2_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 142 }, "pd.rcngene.1.0.st": { "Package": "pd.rcngene.1.0.st", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "9c7c5ef4d4f5ed92d9130d77a99a0685", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix RCnGene-1_0-st", "Description": "Platform Design Info for Affymetrix RCnGene-1_0-st", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.rcngene.1.0.st_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "pd.rcngene.1.1.st": { "Package": "pd.rcngene.1.1.st", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "9781549447d90b5423e820fff5cc6273", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix RCnGene-1_1-st", "Description": "Platform Design Info for Affymetrix RCnGene-1_1-st", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.rcngene.1.1.st_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 529 }, "pd.rg.u34a": { "Package": "pd.rg.u34a", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "ac3a6cc203dabb8faab85b97f1a7ae3c", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name RG_U34A", "Description": "Platform Design Info for The Manufacturer's Name RG_U34A", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.rg.u34a_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 396 }, "pd.rg.u34b": { "Package": "pd.rg.u34b", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "757966b66795d388c7169816d31977ad", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name RG_U34B", "Description": "Platform Design Info for The Manufacturer's Name RG_U34B", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.rg.u34b_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "pd.rg.u34c": { "Package": "pd.rg.u34c", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "bc9cb7b208972ac2901235bdabdee5b2", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name RG_U34C", "Description": "Platform Design Info for The Manufacturer's Name RG_U34C", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.rg.u34c_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 529 }, "pd.rhegene.1.0.st": { "Package": "pd.rhegene.1.0.st", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "6469add6928e663529df4df98fcdd7a8", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix RheGene-1_0-st", "Description": "Platform Design Info for Affymetrix RheGene-1_0-st", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.rhegene.1.0.st_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 291 }, "pd.rhegene.1.1.st": { "Package": "pd.rhegene.1.1.st", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "4f63424ab52283a95731767dce6623cd", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix RheGene-1_1-st", "Description": "Platform Design Info for Affymetrix RheGene-1_1-st", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.rhegene.1.1.st_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 359 }, "pd.rhesus": { "Package": "pd.rhesus", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "51efcfe1384ac956ff93bf0530965054", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name Rhesus", "Description": "Platform Design Info for The Manufacturer's Name Rhesus", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.rhesus_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 396 }, "pd.rice": { "Package": "pd.rice", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "9c456981b3d0b99a96ac6c71e3eb7c8a", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name Rice", "Description": "Platform Design Info for The Manufacturer's Name Rice", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.rice_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "pd.rjpgene.1.0.st": { "Package": "pd.rjpgene.1.0.st", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "066f5dbacc1110e42ce4d457ad3b9306", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix RJpGene-1_0-st", "Description": "Platform Design Info for Affymetrix RJpGene-1_0-st", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.rjpgene.1.0.st_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "pd.rjpgene.1.1.st": { "Package": "pd.rjpgene.1.1.st", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "265503774b15e0f4e71ac53a276a80f2", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix RJpGene-1_1-st", "Description": "Platform Design Info for Affymetrix RJpGene-1_1-st", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.rjpgene.1.1.st_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "pd.rn.u34": { "Package": "pd.rn.u34", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "1728c547f1383bffab330796505119ec", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name RN_U34", "Description": "Platform Design Info for The Manufacturer's Name RN_U34", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.rn.u34_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 591 }, "pd.rta.1.0": { "Package": "pd.rta.1.0", "Version": "3.12.2", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "90752a892a103c7fe4cd6c86e61a61db", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix RTA-1_0", "Description": "Platform Design Info for Affymetrix RTA-1_0", "biocViews": [ "AnnotationData", "oligo" ], "Author": "James W. MacDonald", "Maintainer": "James W. MacDonald ", "source.ver": "src/contrib/pd.rta.1.0_3.12.2.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 396 }, "pd.rusgene.1.0.st": { "Package": "pd.rusgene.1.0.st", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "0b9b00fee58ef211e041395052344483", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix RUSGene-1_0-st", "Description": "Platform Design Info for Affymetrix RUSGene-1_0-st", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.rusgene.1.0.st_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "pd.rusgene.1.1.st": { "Package": "pd.rusgene.1.1.st", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "228837c2de4a4b106806cb7f384564fa", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix RUSGene-1_1-st", "Description": "Platform Design Info for Affymetrix RUSGene-1_1-st", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.rusgene.1.1.st_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 779 }, "pd.s.aureus": { "Package": "pd.s.aureus", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "f173ae6e4316aaa2eafbde92d5868a5a", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name S_aureus", "Description": "Platform Design Info for The Manufacturer's Name S_aureus", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.s.aureus_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 396 }, "pd.soybean": { "Package": "pd.soybean", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "6dbe167be9d40c1d9096485afb4525f0", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name Soybean", "Description": "Platform Design Info for The Manufacturer's Name Soybean", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.soybean_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "pd.soygene.1.0.st": { "Package": "pd.soygene.1.0.st", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "b264df0648ec35d04f91e0ef8e26ac95", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix SoyGene-1_0-st", "Description": "Platform Design Info for Affymetrix SoyGene-1_0-st", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.soygene.1.0.st_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 529 }, "pd.soygene.1.1.st": { "Package": "pd.soygene.1.1.st", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "4a911a4a4b5de927fe6239e500a2993f", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix SoyGene-1_1-st", "Description": "Platform Design Info for Affymetrix SoyGene-1_1-st", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.soygene.1.1.st_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 359 }, "pd.sugar.cane": { "Package": "pd.sugar.cane", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "bd7eb8b1a1c9ac77359358a5347330fb", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name Sugar_Cane", "Description": "Platform Design Info for The Manufacturer's Name Sugar_Cane", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.sugar.cane_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "pd.tomato": { "Package": "pd.tomato", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "ce78f6ee43d72e017608413dd4d50580", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name Tomato", "Description": "Platform Design Info for The Manufacturer's Name Tomato", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.tomato_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "pd.u133.x3p": { "Package": "pd.u133.x3p", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "e3f343e32273667f851e26d7b8a7a5db", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name U133_X3P", "Description": "Platform Design Info for The Manufacturer's Name U133_X3P", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.u133.x3p_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 255 }, "pd.vitis.vinifera": { "Package": "pd.vitis.vinifera", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "104a8ac33a9baa25a61f953679795696", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name Vitis_Vinifera", "Description": "Platform Design Info for The Manufacturer's Name Vitis_Vinifera", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.vitis.vinifera_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 591 }, "pd.wheat": { "Package": "pd.wheat", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "38a7183c8d3b874cf62391a9e9169bb9", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name wheat", "Description": "Platform Design Info for The Manufacturer's Name wheat", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.wheat_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 396 }, "pd.x.laevis.2": { "Package": "pd.x.laevis.2", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "32416957e3cdc11ad4dbfcd9141ff113", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name X_laevis_2", "Description": "Platform Design Info for The Manufacturer's Name X_laevis_2", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.x.laevis.2_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 359 }, "pd.x.tropicalis": { "Package": "pd.x.tropicalis", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "79a4de91831e4b0153495e12b9c6e8d3", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name X_tropicalis", "Description": "Platform Design Info for The Manufacturer's Name X_tropicalis", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.x.tropicalis_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 359 }, "pd.xenopus.laevis": { "Package": "pd.xenopus.laevis", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "6d5c2c9e8e3891770b1c6e9dcd823c0d", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name Xenopus_laevis", "Description": "Platform Design Info for The Manufacturer's Name Xenopus_laevis", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.xenopus.laevis_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "pd.yeast.2": { "Package": "pd.yeast.2", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "780f5139ee9cda46c9e38122538ce129", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name Yeast_2", "Description": "Platform Design Info for The Manufacturer's Name Yeast_2", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.yeast.2_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 278 }, "pd.yg.s98": { "Package": "pd.yg.s98", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "caec3e8f29918f078b2dc7c76f4a74e2", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name YG_S98", "Description": "Platform Design Info for The Manufacturer's Name YG_S98", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.yg.s98_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "pd.zebgene.1.0.st": { "Package": "pd.zebgene.1.0.st", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "54fcf757b8069e95dd7e2f3ff74ae050", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix ZebGene-1_0-st", "Description": "Platform Design Info for Affymetrix ZebGene-1_0-st", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.zebgene.1.0.st_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 337 }, "pd.zebgene.1.1.st": { "Package": "pd.zebgene.1.1.st", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "d87028cd9024bc33be518635cf2f48fc", "NeedsCompilation": "no", "Title": "Platform Design Info for Affymetrix ZebGene-1_1-st", "Description": "Platform Design Info for Affymetrix ZebGene-1_1-st", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.zebgene.1.1.st_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 359 }, "pd.zebrafish": { "Package": "pd.zebrafish", "Version": "3.12.0", "Depends": [ "R (>= 3.2.0)", "Biostrings (>= 2.35.12)", "methods", "RSQLite (>= 1.0.0)", "oligoClasses (>= 1.29.6)", "oligo (>= 1.31.5)", "DBI (>= 0.3.1)", "IRanges (>= 2.1.43)", "S4Vectors (>= 0.5.22)" ], "License": "Artistic-2.0", "MD5sum": "101f09a9d9304d1d8fbcc7f4812897b1", "NeedsCompilation": "no", "Title": "Platform Design Info for The Manufacturer's Name Zebrafish", "Description": "Platform Design Info for The Manufacturer's Name Zebrafish", "biocViews": [ "AnnotationData", "oligo" ], "Author": "Benilton Carvalho", "Maintainer": "Benilton Carvalho ", "source.ver": "src/contrib/pd.zebrafish_3.12.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "pedbarrayv10.db": { "Package": "pedbarrayv10.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Hs.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "25acc3bfee229015ecca1c7d688e5168", "NeedsCompilation": "no", "Title": "FHCRC Nelson Lab pedbarrayv10 Annotation Data (pedbarrayv10)", "Description": "FHCRC Nelson Lab pedbarrayv10 Annotation Data (pedbarrayv10) assembled using data from public repositories", "biocViews": [ "AnnotationData", "ChipDb", "FHCRC Nelson LabChip", "Homo_sapiens", "pedbarrayv10" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Homo sapiens", "manufacturer": "FHCRC Nelson Lab", "source.ver": "src/contrib/pedbarrayv10.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 875 }, "pedbarrayv9.db": { "Package": "pedbarrayv9.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Hs.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "da4b2f9c0a672e0c9ee53f017bacaff7", "NeedsCompilation": "no", "Title": "FHCRC Nelson Lab pedbarrayv9 Annotation Data (pedbarrayv9)", "Description": "FHCRC Nelson Lab pedbarrayv9 Annotation Data (pedbarrayv9) assembled using data from public repositories", "biocViews": [ "AnnotationData", "ChipDb", "FHCRC Nelson LabChip", "Homo_sapiens", "pedbarrayv9" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Homo sapiens", "manufacturer": "FHCRC Nelson Lab", "source.ver": "src/contrib/pedbarrayv9.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 779 }, "PFAM.db": { "Package": "PFAM.db", "Version": "3.6.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.41.4)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI" ], "License": "Artistic-2.0", "MD5sum": "84bf0f03fdf923d0be6d1c9eb18d54fb", "NeedsCompilation": "no", "Title": "A set of protein ID mappings for PFAM", "Description": "A set of protein ID mappings for PFAM assembled using data from public repositories", "biocViews": [ "AnnotationData" ], "Author": "Marc Carlson, Ting-Yuan Liu, ChenWei Lin, Seth Falcon, Jianhua Zhang, James W. MacDonald", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/PFAM.db_3.6.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 15, "suggestsMe": [ "safe" ], "importsMe": [ "ReportingTools" ] }, "phastCons100way.UCSC.hg19": { "Package": "phastCons100way.UCSC.hg19", "Version": "3.7.2", "Depends": [ "R (>= 3.0.0)", "GenomicScores (>= 1.3.19)" ], "Imports": [ "utils", "S4Vectors", "IRanges", "GenomicRanges", "GenomeInfoDb", "BSgenome" ], "License": "Artistic-2.0", "MD5sum": "65aa706a567f7e328dbba0095f995cf1", "NeedsCompilation": "no", "Title": "UCSC phastCons conservation scores for hg19", "Description": "Store UCSC phastCons conservation scores for the human genome (hg19) calculated from multiple alignments with other 99 vertebrate species.", "biocViews": [ "AnnotationData", "Genetics", "GenomicScores", "Homo_sapiens" ], "Author": "Robert Castelo [aut, cre]", "Maintainer": "Robert Castelo ", "source.ver": "src/contrib/phastCons100way.UCSC.hg19_3.7.2.tar.gz", "hasREADME": false, "hasNEWS": true, "hasINSTALL": false, "hasLICENSE": false, "Rank": 82, "suggestsMe": [ "ATACseqQC", "GenomicScores", "VariantFiltering" ], "importsMe": [ "RareVariantVis" ] }, "phastCons100way.UCSC.hg38": { "Package": "phastCons100way.UCSC.hg38", "Version": "3.7.1", "Depends": [ "R (>= 3.0.0)", "GenomicScores (>= 1.3.19)" ], "Imports": [ "utils", "S4Vectors", "IRanges", "GenomicRanges", "GenomeInfoDb", "BSgenome" ], "License": "Artistic-2.0", "MD5sum": "878c757f9270b3410d11e4e4a4213c8e", "NeedsCompilation": "no", "Title": "UCSC phastCons conservation scores for hg38", "Description": "Store UCSC phastCons conservation scores for the human genome (hg38) calculated from multiple alignments with other 99 vertebrate species.", "biocViews": [ "AnnotationData", "Genetics", "GenomicScores", "Homo_sapiens" ], "Author": "Robert Castelo [aut, cre]", "Maintainer": "Robert Castelo ", "source.ver": "src/contrib/phastCons100way.UCSC.hg38_3.7.1.tar.gz", "hasREADME": false, "hasNEWS": true, "hasINSTALL": false, "hasLICENSE": false, "Rank": 255 }, "phastCons7way.UCSC.hg38": { "Package": "phastCons7way.UCSC.hg38", "Version": "3.7.1", "Depends": [ "R (>= 3.0.0)", "GenomicScores (>= 1.3.19)" ], "Imports": [ "utils", "S4Vectors", "IRanges", "GenomicRanges", "GenomeInfoDb", "BSgenome" ], "License": "Artistic-2.0", "MD5sum": "c2d87446b022c166c1c325ea2aef521d", "NeedsCompilation": "no", "Title": "UCSC phastCons conservation scores for hg38", "Description": "Store UCSC phastCons conservation scores for the human genome (hg38) calculated from multiple alignments with other 6 vertebrate species.", "biocViews": [ "AnnotationData", "Genetics", "GenomicScores", "Homo_sapiens" ], "Author": "Robert Castelo [aut, cre]", "Maintainer": "Robert Castelo ", "source.ver": "src/contrib/phastCons7way.UCSC.hg38_3.7.1.tar.gz", "hasREADME": false, "hasNEWS": true, "hasINSTALL": false, "hasLICENSE": false, "Rank": 591 }, "pig.db0": { "Package": "pig.db0", "Version": "3.6.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.41.4)" ], "Imports": [ "methods", "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "234461a89081b3d0e3566aa2e0208240", "NeedsCompilation": "no", "Title": "Base Level Annotation databases for pig", "Description": "Base annotation databases for pig, intended ONLY to be used by AnnotationDbi to produce regular annotation packages.", "biocViews": [ "AnnotationData", "Sus_scrofa", "db0" ], "Author": "Bioconductor Core Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Sus scrofa", "source.ver": "src/contrib/pig.db0_3.6.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "plasmodiumanophelescdf": { "Package": "plasmodiumanophelescdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "54c5c326977d6358c40cacf34cb2aca2", "NeedsCompilation": "no", "Title": "plasmodiumanophelescdf", "Description": "A package containing an environment representing the Plasmodium_Anopheles.cdf file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Anopheles_gambiae", "Plasmodium_falciparum", "cdf", "plasmodiumanopheles" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/plasmodiumanophelescdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 319, "suggestsMe": [ "altcdfenvs" ] }, "plasmodiumanophelesprobe": { "Package": "plasmodiumanophelesprobe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "281683dab923168c2eedb7b08c528935", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type plasmodiumanopheles", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Plasmodium\\_Anopheles\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Anopheles_gambiae", "Plasmodium_falciparum", "plasmodiumanopheles", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/plasmodiumanophelesprobe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 779 }, "POCRCannotation.db": { "Package": "POCRCannotation.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Hs.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "da1d4dacc5fffb9c5dfea55649974aa5", "NeedsCompilation": "no", "Title": "A package containing metadata for POCRC arrays", "Description": "A package containing metadata for POCRC arrays assembled using data from public repositories", "biocViews": [ "AnnotationData", "CUSTOMChip", "ChipDb", "Homo_sapiens", "POCRCannotation" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Homo sapiens", "manufacturer": "CUSTOM", "source.ver": "src/contrib/POCRCannotation.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 824 }, "PolyPhen.Hsapiens.dbSNP131": { "Package": "PolyPhen.Hsapiens.dbSNP131", "Version": "1.0.2", "Depends": [ "VariantAnnotation", "RSQLite (>= 0.11.0)" ], "Imports": [ "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "763e9cd4afd97b36f7e659f5454ef61f", "NeedsCompilation": "no", "Title": "PolyPhen Predictions for Homo sapiens dbSNP build 131", "Description": "Database of PolyPhen predictions for Homo sapiens dbSNP build 131", "biocViews": [ "AnnotationData", "Genetics", "Homo_sapiens" ], "Author": "Valerie Obenchain", "Maintainer": "Valerie Obenchain ", "organism": "Homo sapiens", "source.ver": "src/contrib/PolyPhen.Hsapiens.dbSNP131_1.0.2.tar.gz", "hasREADME": false, "hasNEWS": true, "hasINSTALL": false, "hasLICENSE": false, "Rank": 135, "suggestsMe": [ "VariantAnnotation", "VariantFiltering" ], "dependsOnMe": [ "variants" ] }, "poplarcdf": { "Package": "poplarcdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "556e7f8f6f76436552d8044ef29279cb", "NeedsCompilation": "no", "Title": "poplarcdf", "Description": "A package containing an environment representing the Poplar.cdf file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Populus_sp", "cdf", "poplar" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/poplarcdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 396 }, "poplarprobe": { "Package": "poplarprobe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "87a608cd86084a06973a88e9b51f799a", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type poplar", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Poplar\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Populus_sp", "poplar", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/poplarprobe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 726 }, "porcine.db": { "Package": "porcine.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Ss.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "a90a6ad39b7fda3f30c23ab315201317", "NeedsCompilation": "no", "Title": "Affymetrix porcine annotation data (chip porcine)", "Description": "Affymetrix porcine annotation data (chip porcine) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Sus_scrofa", "porcine" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Sus scrofa", "manufacturer": "Affymetrix", "source.ver": "src/contrib/porcine.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 217 }, "porcinecdf": { "Package": "porcinecdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "32a60b93829c06a935895fab0a469228", "NeedsCompilation": "no", "Title": "porcinecdf", "Description": "A package containing an environment representing the Porcine.cdf file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Sus_scrofa", "cdf", "porcine" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/porcinecdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 278 }, "porcineprobe": { "Package": "porcineprobe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "5ac483b6329a012d4c9954e3dee8869e", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type porcine", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Porcine\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Sus_scrofa", "porcine", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/porcineprobe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "primeviewcdf": { "Package": "primeviewcdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "71e39a59a5907e9b8a8dba58d36eee50", "NeedsCompilation": "no", "Title": "primeviewcdf", "Description": "A package containing an environment representing the PrimeView.cdf file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "primeview" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/primeviewcdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 176 }, "primeviewprobe": { "Package": "primeviewprobe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "87cc56a8da4fb742ab1558ce1d3d26cc", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type primeview", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was PrimeView\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "primeview", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/primeviewprobe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 359 }, "r10kcod.db": { "Package": "r10kcod.db", "Version": "3.4.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.31.18)", "org.Rn.eg.db (>= 3.2.1)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "4a7a25fee64294cfb5adccaa6cf28772", "NeedsCompilation": "no", "Title": "Codelink UniSet Rat I Bioarray (~10 000 rat gene targets) annotation data (chip r10kcod)", "Description": "Codelink UniSet Rat I Bioarray (~10 000 rat gene targets) annotation data (chip r10kcod) assembled using data from public repositories", "biocViews": [ "AnnotationData", "ChipDb", "CodelinkChip", "Rattus_norvegicus", "r10kcod" ], "Author": "Diego Diez", "Maintainer": "Diego Diez ", "organism": "Rattus norvegicus", "manufacturer": "Codelink", "source.ver": "src/contrib/r10kcod.db_3.4.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "rae230a.db": { "Package": "rae230a.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Rn.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "fb9d6a02ce85cc521c0477a1a6f861f6", "NeedsCompilation": "no", "Title": "Affymetrix Rat Expression Set 230 annotation data (chip rae230a)", "Description": "Affymetrix Rat Expression Set 230 annotation data (chip rae230a) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Rattus_norvegicus", "rae230a" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Rattus norvegicus", "manufacturer": "Affymetrix", "source.ver": "src/contrib/rae230a.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 153, "suggestsMe": [ "annotate" ] }, "rae230acdf": { "Package": "rae230acdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "6f2281124e1be164d5fd599e84f6adbc", "NeedsCompilation": "no", "Title": "rae230acdf", "Description": "A package containing an environment representing the RAE230A.CDF file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Rattus_norvegicus", "cdf", "rae230a" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/rae230acdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 261 }, "rae230aprobe": { "Package": "rae230aprobe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "6f2d77e1d9c1e3afb96ef78b3202bb0b", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type rae230a", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was RAE230A\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Rattus_norvegicus", "probe", "rae230a" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/rae230aprobe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 178, "suggestsMe": [ "annotate" ] }, "rae230b.db": { "Package": "rae230b.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Rn.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "23fb8fd2cf3f178020db9b7f5692a28d", "NeedsCompilation": "no", "Title": "Affymetrix Rat Expression Set 230 annotation data (chip rae230b)", "Description": "Affymetrix Rat Expression Set 230 annotation data (chip rae230b) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Rattus_norvegicus", "rae230b" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Rattus norvegicus", "manufacturer": "Affymetrix", "source.ver": "src/contrib/rae230b.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 529 }, "rae230bcdf": { "Package": "rae230bcdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "bd61c17402e9c04be1000c16e0356618", "NeedsCompilation": "no", "Title": "rae230bcdf", "Description": "A package containing an environment representing the RAE230B.CDF file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Rattus_norvegicus", "cdf", "rae230b" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/rae230bcdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "rae230bprobe": { "Package": "rae230bprobe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "7bdb3a07e1f00de8ff510a69bdac4c53", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type rae230b", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was RAE230B\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Rattus_norvegicus", "probe", "rae230b" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/rae230bprobe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "raex10stprobeset.db": { "Package": "raex10stprobeset.db", "Version": "8.7.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.39.4)", "org.Rn.eg.db (>= 3.4.2)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "9cdc6abb3cf39eb7363fe74a0963c5b7", "NeedsCompilation": "no", "Title": "Affymetrix raex10 annotation data (chip raex10stprobeset)", "Description": "Affymetrix raex10 annotation data (chip raex10stprobeset) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Rattus_norvegicus", "raex10stprobeset" ], "Author": "James W. MacDonald", "Maintainer": "Biocore Package Maintainer ", "organism": "Rattus norvegicus", "manufacturer": "Affymetrix", "source.ver": "src/contrib/raex10stprobeset.db_8.7.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 875 }, "raex10sttranscriptcluster.db": { "Package": "raex10sttranscriptcluster.db", "Version": "8.7.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.39.4)", "org.Rn.eg.db (>= 3.4.2)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "3eb2d97bfffb595e6b23550f4a27a8c3", "NeedsCompilation": "no", "Title": "Affymetrix raex10 annotation data (chip raex10sttranscriptcluster)", "Description": "Affymetrix raex10 annotation data (chip raex10sttranscriptcluster) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Rattus_norvegicus", "raex10sttranscriptcluster" ], "Author": "James W. MacDonald", "Maintainer": "Biocore Package Maintainer ", "organism": "Rattus norvegicus", "manufacturer": "Affymetrix", "source.ver": "src/contrib/raex10sttranscriptcluster.db_8.7.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 779 }, "RaExExonProbesetLocation": { "Package": "RaExExonProbesetLocation", "Version": "1.15.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.7.17)" ], "License": "LGPL", "MD5sum": "d547bcd30685495283b32f0f86ecc79b", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type RaEx", "Description": "This package was automatically created by package AnnotationForge version 1.7.17. The exon-level probeset genome location was retrieved from Netaffx using AffyCompatible.", "biocViews": [ "AffymetrixChip", "AnnotationData", "RaEx", "Rattus norvegicus", "probe" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Raffaele A. Calogero ", "source.ver": "src/contrib/RaExExonProbesetLocation_1.15.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "ragene10stprobeset.db": { "Package": "ragene10stprobeset.db", "Version": "8.7.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.39.4)", "org.Rn.eg.db (>= 3.4.2)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "7338948d43b2200ca255aeb87cf99f3e", "NeedsCompilation": "no", "Title": "Affymetrix ragene10 annotation data (chip ragene10stprobeset)", "Description": "Affymetrix ragene10 annotation data (chip ragene10stprobeset) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Rattus_norvegicus", "ragene10stprobeset" ], "Author": "James W. MacDonald", "Maintainer": "Biocore Package Maintainer ", "organism": "Rattus norvegicus", "manufacturer": "Affymetrix", "source.ver": "src/contrib/ragene10stprobeset.db_8.7.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "ragene10sttranscriptcluster.db": { "Package": "ragene10sttranscriptcluster.db", "Version": "8.7.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.39.4)", "org.Rn.eg.db (>= 3.4.2)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "2523540bab5f12e6e5c1e140c1663832", "NeedsCompilation": "no", "Title": "Affymetrix ragene10 annotation data (chip ragene10sttranscriptcluster)", "Description": "Affymetrix ragene10 annotation data (chip ragene10sttranscriptcluster) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Rattus_norvegicus", "ragene10sttranscriptcluster" ], "Author": "James W. MacDonald", "Maintainer": "Biocore Package Maintainer ", "organism": "Rattus norvegicus", "manufacturer": "Affymetrix", "source.ver": "src/contrib/ragene10sttranscriptcluster.db_8.7.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 306 }, "ragene10stv1cdf": { "Package": "ragene10stv1cdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "df696e9dbf5b3f2761b6a0a5914be058", "NeedsCompilation": "no", "Title": "ragene10stv1cdf", "Description": "A package containing an environment representing the RaGene-1_0-st-v1.cdf file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Rattus_norvegicus", "cdf", "ragene10stv1" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/ragene10stv1cdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 396 }, "ragene10stv1probe": { "Package": "ragene10stv1probe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "94978b6efb075aacf31ccdc8000e40fa", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type ragene10stv1", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was RaGene-1\\_0-st-v1\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Rattus_norvegicus", "probe", "ragene10stv1" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/ragene10stv1probe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 726 }, "ragene11stprobeset.db": { "Package": "ragene11stprobeset.db", "Version": "8.7.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.39.4)", "org.Rn.eg.db (>= 3.4.2)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "5ce8dfb793afc7307106f3d4872dfeb1", "NeedsCompilation": "no", "Title": "Affymetrix ragene11 annotation data (chip ragene11stprobeset)", "Description": "Affymetrix ragene11 annotation data (chip ragene11stprobeset) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Rattus_norvegicus", "ragene11stprobeset" ], "Author": "James W. MacDonald", "Maintainer": "Biocore Package Maintainer ", "organism": "Rattus norvegicus", "manufacturer": "Affymetrix", "source.ver": "src/contrib/ragene11stprobeset.db_8.7.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "ragene11sttranscriptcluster.db": { "Package": "ragene11sttranscriptcluster.db", "Version": "8.7.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.39.4)", "org.Rn.eg.db (>= 3.4.2)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "81a645c32105ffb4bfb45eb8bcf13855", "NeedsCompilation": "no", "Title": "Affymetrix ragene11 annotation data (chip ragene11sttranscriptcluster)", "Description": "Affymetrix ragene11 annotation data (chip ragene11sttranscriptcluster) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Rattus_norvegicus", "ragene11sttranscriptcluster" ], "Author": "James W. MacDonald", "Maintainer": "Biocore Package Maintainer ", "organism": "Rattus norvegicus", "manufacturer": "Affymetrix", "source.ver": "src/contrib/ragene11sttranscriptcluster.db_8.7.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "ragene20stprobeset.db": { "Package": "ragene20stprobeset.db", "Version": "8.7.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.39.4)", "org.Rn.eg.db (>= 3.4.2)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "dd4e8701fd716e8564da2581d52ce1db", "NeedsCompilation": "no", "Title": "Affymetrix ragene20 annotation data (chip ragene20stprobeset)", "Description": "Affymetrix ragene20 annotation data (chip ragene20stprobeset) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Rattus_norvegicus", "ragene20stprobeset" ], "Author": "James W. MacDonald", "Maintainer": "Biocore Package Maintainer ", "organism": "Rattus norvegicus", "manufacturer": "Affymetrix", "source.ver": "src/contrib/ragene20stprobeset.db_8.7.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 591 }, "ragene20sttranscriptcluster.db": { "Package": "ragene20sttranscriptcluster.db", "Version": "8.7.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.39.4)", "org.Rn.eg.db (>= 3.4.2)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "79693b35c3837f9e5fe7337ac3e86e1f", "NeedsCompilation": "no", "Title": "Affymetrix ragene20 annotation data (chip ragene20sttranscriptcluster)", "Description": "Affymetrix ragene20 annotation data (chip ragene20sttranscriptcluster) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Rattus_norvegicus", "ragene20sttranscriptcluster" ], "Author": "James W. MacDonald", "Maintainer": "Biocore Package Maintainer ", "organism": "Rattus norvegicus", "manufacturer": "Affymetrix", "source.ver": "src/contrib/ragene20sttranscriptcluster.db_8.7.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 337 }, "ragene21stprobeset.db": { "Package": "ragene21stprobeset.db", "Version": "8.7.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.39.4)", "org.Rn.eg.db (>= 3.4.2)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "9a2e1eb46277622a673eb3e11ca14aee", "NeedsCompilation": "no", "Title": "Affymetrix ragene21 annotation data (chip ragene21stprobeset)", "Description": "Affymetrix ragene21 annotation data (chip ragene21stprobeset) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Rattus_norvegicus", "ragene21stprobeset" ], "Author": "James W. MacDonald", "Maintainer": "Biocore Package Maintainer ", "organism": "Rattus norvegicus", "manufacturer": "Affymetrix", "source.ver": "src/contrib/ragene21stprobeset.db_8.7.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 726 }, "ragene21sttranscriptcluster.db": { "Package": "ragene21sttranscriptcluster.db", "Version": "8.7.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.39.4)", "org.Rn.eg.db (>= 3.4.2)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "45a0cfb35fc78ec28705024a8d091163", "NeedsCompilation": "no", "Title": "Affymetrix ragene21 annotation data (chip ragene21sttranscriptcluster)", "Description": "Affymetrix ragene21 annotation data (chip ragene21sttranscriptcluster) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Rattus_norvegicus", "ragene21sttranscriptcluster" ], "Author": "James W. MacDonald", "Maintainer": "Biocore Package Maintainer ", "organism": "Rattus norvegicus", "manufacturer": "Affymetrix", "source.ver": "src/contrib/ragene21sttranscriptcluster.db_8.7.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "rat.db0": { "Package": "rat.db0", "Version": "3.6.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.41.4)" ], "Imports": [ "methods", "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "4abe3035d4b5dd28b87fc110844f6092", "NeedsCompilation": "no", "Title": "Base Level Annotation databases for rat", "Description": "Base annotation databases for rat, intended ONLY to be used by AnnotationDbi to produce regular annotation packages.", "biocViews": [ "AnnotationData", "Rattus_norvegicus", "db0" ], "Author": "Bioconductor Core Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Rattus norvegicus", "source.ver": "src/contrib/rat.db0_3.6.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 591 }, "rat2302.db": { "Package": "rat2302.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Rn.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "bcd325ab88de497001867a7cae4501cc", "NeedsCompilation": "no", "Title": "Affymetrix Rat Genome 230 2.0 Array annotation data (chip rat2302)", "Description": "Affymetrix Rat Genome 230 2.0 Array annotation data (chip rat2302) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Rattus_norvegicus", "rat2302" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Rattus norvegicus", "manufacturer": "Affymetrix", "source.ver": "src/contrib/rat2302.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 72, "suggestsMe": [ "pcaGoPromoter" ] }, "rat2302cdf": { "Package": "rat2302cdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "a033730f79a11d45b4cd7e7c520f8052", "NeedsCompilation": "no", "Title": "rat2302cdf", "Description": "A package containing an environment representing the Rat230_2.cdf file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Rattus_norvegicus", "cdf", "rat2302" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/rat2302cdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 70 }, "rat2302probe": { "Package": "rat2302probe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "d1d9215e52b9e845cc4d7c902536e0d6", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type rat2302", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Rat230\\_2\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Rattus_norvegicus", "probe", "rat2302" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/rat2302probe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 142 }, "ratCHRLOC": { "Package": "ratCHRLOC", "Version": "2.1.6", "Depends": [ "R(>= 2.7.0)" ], "License": "The Artistic License, Version 2.0", "MD5sum": "6fecff4821a5a47e3bd38a2ff78173d5", "NeedsCompilation": "no", "Title": "A data package containing annotation data for ratCHRLOC", "Description": "Annotation data file for ratCHRLOC assembled using data from public data repositories", "biocViews": [ "AnnotationData", "FunctionalAnnotation", "Rattus_norvegicus" ], "Author": "Ting-Yuan Liu, ChenWei Lin, Seth Falcon, Jianhua Zhang, James W. MacDonald", "Maintainer": "Biocore Data Team ", "organism": "Rattus norvegicus", "source.ver": "src/contrib/ratCHRLOC_2.1.6.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "rattoxfxcdf": { "Package": "rattoxfxcdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "912d0fa424615fcd92773ed174d5efdd", "NeedsCompilation": "no", "Title": "rattoxfxcdf", "Description": "A package containing an environment representing the RatToxFX.cdf file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Rattus_norvegicus", "cdf", "rattoxfx" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/rattoxfxcdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 591 }, "rattoxfxprobe": { "Package": "rattoxfxprobe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "202791c72e8c956b9854fa4d9ba67a24", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type rattoxfx", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was RatToxFX\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Rattus_norvegicus", "probe", "rattoxfx" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/rattoxfxprobe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "Rattus.norvegicus": { "Package": "Rattus.norvegicus", "Version": "1.3.1", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.17.11)", "methods", "OrganismDbi (>= 1.11.39)", "GenomicFeatures", "GO.db", "org.Rn.eg.db", "TxDb.Rnorvegicus.UCSC.rn5.refGene" ], "Imports": [ "GenomicFeatures", "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "5692fdeb0bc7f94e1db35f097cad99a9", "NeedsCompilation": "no", "Title": "Annotation package for the Rattus.norvegicus object", "Description": "Contains the Rattus.norvegicus object to access data from several related annotation packages.", "biocViews": [ "AnnotationData", "Genetics", "OrganismDb", "Rattus_norvegicus" ], "Author": "Bioconductor Core Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Rattus norvegicus", "source.ver": "src/contrib/Rattus.norvegicus_1.3.1.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 230, "suggestsMe": [ "OrganismDbi" ] }, "reactome.db": { "Package": "reactome.db", "Version": "1.64.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.33.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "RSQLite" ], "License": "CC BY 4.0", "MD5sum": "4dfc5160ef8673ff4a892cb4146d1eeb", "NeedsCompilation": "no", "Title": "A set of annotation maps for reactome", "Description": "A set of annotation maps for reactome assembled using data from reactome", "biocViews": [ "AnnotationData", "FunctionalAnnotation" ], "Author": "Willem Ligtenberg", "Maintainer": "Willem Ligtenberg ", "source.ver": "src/contrib/reactome.db_1.64.0.tar.gz", "hasREADME": false, "hasNEWS": true, "hasINSTALL": false, "hasLICENSE": false, "Rank": 12, "suggestsMe": [ "AnnotationDbi", "BioCor", "ChIPpeakAnno", "FGNet", "fgsea", "gCMAP", "GeneAnswers", "MLP", "PCAN", "safe" ], "importsMe": [ "attract", "bioCancer", "mAPKL", "ReactomePA", "SMITE" ] }, "rgu34a.db": { "Package": "rgu34a.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Rn.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "b8e7fec45ef9e1423cda3171bb12e34c", "NeedsCompilation": "no", "Title": "Affymetrix Rat Genome U34 Set annotation data (chip rgu34a)", "Description": "Affymetrix Rat Genome U34 Set annotation data (chip rgu34a) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Rattus_norvegicus", "rgu34a" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Rattus norvegicus", "manufacturer": "Affymetrix", "source.ver": "src/contrib/rgu34a.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 195 }, "rgu34acdf": { "Package": "rgu34acdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "dcfa7ecce00e529f93809759ed837b8d", "NeedsCompilation": "no", "Title": "rgu34acdf", "Description": "A package containing an environment representing the RG_U34A.cdf file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Rattus_norvegicus", "cdf", "rgu34a" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/rgu34acdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 225 }, "rgu34aprobe": { "Package": "rgu34aprobe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "902aee259a2894fa8713c4bf9266c0e2", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type rgu34a", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was RG-U34A\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Rattus_norvegicus", "probe", "rgu34a" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/rgu34aprobe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 529 }, "rgu34b.db": { "Package": "rgu34b.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Rn.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "d2ad468820c1cfbe94297d423237f5bb", "NeedsCompilation": "no", "Title": "Affymetrix Rat Genome U34 Set annotation data (chip rgu34b)", "Description": "Affymetrix Rat Genome U34 Set annotation data (chip rgu34b) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Rattus_norvegicus", "rgu34b" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Rattus norvegicus", "manufacturer": "Affymetrix", "source.ver": "src/contrib/rgu34b.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "rgu34bcdf": { "Package": "rgu34bcdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "428b3a39f0d8addd7d863539b8cda6ea", "NeedsCompilation": "no", "Title": "rgu34bcdf", "Description": "A package containing an environment representing the RG_U34B.cdf file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Rattus_norvegicus", "cdf", "rgu34b" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/rgu34bcdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 591 }, "rgu34bprobe": { "Package": "rgu34bprobe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "2d6488309c5e54231a18e2ecf5608bb1", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type rgu34b", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was RG-U34B\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Rattus_norvegicus", "probe", "rgu34b" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/rgu34bprobe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 779 }, "rgu34c.db": { "Package": "rgu34c.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Rn.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "59b66663b8d419599d48301661bfa2c3", "NeedsCompilation": "no", "Title": "Affymetrix Rat Genome U34 Set annotation data (chip rgu34c)", "Description": "Affymetrix Rat Genome U34 Set annotation data (chip rgu34c) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Rattus_norvegicus", "rgu34c" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Rattus norvegicus", "manufacturer": "Affymetrix", "source.ver": "src/contrib/rgu34c.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 529 }, "rgu34ccdf": { "Package": "rgu34ccdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "556a7130086004d26095594da31c6410", "NeedsCompilation": "no", "Title": "rgu34ccdf", "Description": "A package containing an environment representing the RG_U34C.cdf file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Rattus_norvegicus", "cdf", "rgu34c" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/rgu34ccdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 591 }, "rgu34cprobe": { "Package": "rgu34cprobe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "d1a6c433acd30b95fa7be89147105b74", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type rgu34c", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was RG-U34C\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Rattus_norvegicus", "probe", "rgu34c" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/rgu34cprobe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 824 }, "rguatlas4k.db": { "Package": "rguatlas4k.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Rn.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "6a360676e08319ec5465c47c758110bd", "NeedsCompilation": "no", "Title": "Clontech BD Atlas Long Oligos Rat 4K annotation data (chip rguatlas4k)", "Description": "Clontech BD Atlas Long Oligos Rat 4K annotation data (chip rguatlas4k) assembled using data from public repositories", "biocViews": [ "AnnotationData", "ChipDb", "ClontechChip", "Rattus_norvegicus", "rguatlas4k" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Rattus norvegicus", "manufacturer": "Clontech", "source.ver": "src/contrib/rguatlas4k.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 591 }, "rgug4105a.db": { "Package": "rgug4105a.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Rn.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "3ccf354083ae36a7ae687fb8209c4e5b", "NeedsCompilation": "no", "Title": "Agilent annotation data (chip rgug4105a)", "Description": "Agilent annotation data (chip rgug4105a) assembled using data from public repositories", "biocViews": [ "AgilentChip", "AnnotationData", "ChipDb", "Rattus_norvegicus", "rgug4105a" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Rattus norvegicus", "manufacturer": "Agilent", "source.ver": "src/contrib/rgug4105a.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "rgug4130a.db": { "Package": "rgug4130a.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Rn.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "13643ac109aaf12590a5b6e379609b79", "NeedsCompilation": "no", "Title": "Agilent Rat annotation data (chip rgug4130a)", "Description": "Agilent Rat annotation data (chip rgug4130a) assembled using data from public repositories", "biocViews": [ "AgilentChip", "AnnotationData", "ChipDb", "Rattus_norvegicus", "rgug4130a" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Rattus norvegicus", "manufacturer": "Agilent", "source.ver": "src/contrib/rgug4130a.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "rgug4131a.db": { "Package": "rgug4131a.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Rn.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "1168d4906fb8ce60cbc0fa6cfa3b8ec6", "NeedsCompilation": "no", "Title": "Agilent \"Rat Genome, Whole\" annotation data (chip rgug4131a)", "Description": "Agilent \"Rat Genome, Whole\" annotation data (chip rgug4131a) assembled using data from public repositories", "biocViews": [ "AgilentChip", "AnnotationData", "ChipDb", "Rattus_norvegicus", "rgug4131a" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Rattus norvegicus", "manufacturer": "Agilent", "source.ver": "src/contrib/rgug4131a.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "rhesus.db0": { "Package": "rhesus.db0", "Version": "3.6.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.41.4)" ], "Imports": [ "methods", "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "41c7f0a11fec97635c3d8dfda1eb6a52", "NeedsCompilation": "no", "Title": "Base Level Annotation databases for rhesus", "Description": "Base annotation databases for rhesus, intended ONLY to be used by AnnotationDbi to produce regular annotation packages.", "biocViews": [ "AnnotationData", "Macaca_Mulatta", "db0" ], "Author": "Bioconductor Core Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Macaca Mulatta", "source.ver": "src/contrib/rhesus.db0_3.6.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "rhesuscdf": { "Package": "rhesuscdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "994e16da5dd31bc2796d0da40aa2634f", "NeedsCompilation": "no", "Title": "rhesuscdf", "Description": "A package containing an environment representing the Rhesus.cdf file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Macaca_mulatta", "cdf", "rhesus" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/rhesuscdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "rhesusprobe": { "Package": "rhesusprobe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "4169c1c997c4c08b027bc7489533e11e", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type rhesus", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Rhesus\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Macaca_mulatta", "probe", "rhesus" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/rhesusprobe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "ri16cod.db": { "Package": "ri16cod.db", "Version": "3.4.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.31.18)", "org.Rn.eg.db (>= 3.2.1)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "cd01b429295fdbba21dbe566effacbdd", "NeedsCompilation": "no", "Title": "Codelink Rat Inflammation 16 Bioarray annotation data (chip ri16cod)", "Description": "Codelink Rat Inflammation 16 Bioarray annotation data (chip ri16cod) assembled using data from public repositories", "biocViews": [ "AnnotationData", "ChipDb", "CodelinkChip", "Rattus_norvegicus", "ri16cod" ], "Author": "Diego Diez", "Maintainer": "Diego Diez ", "organism": "Rattus norvegicus", "manufacturer": "Codelink", "source.ver": "src/contrib/ri16cod.db_3.4.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 726 }, "ricecdf": { "Package": "ricecdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "51db6f51f4adcfb7f4940d07668db8b8", "NeedsCompilation": "no", "Title": "ricecdf", "Description": "A package containing an environment representing the Rice.cdf file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Oryza_sp", "cdf", "rice" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/ricecdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 200 }, "riceprobe": { "Package": "riceprobe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "2fac7746c343546cf30e6d54bc1e2019", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type rice", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Rice\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Oryza_sp", "probe", "rice" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/riceprobe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 529 }, "RmiR.Hs.miRNA": { "Package": "RmiR.Hs.miRNA", "Version": "1.0.7", "Depends": [ "R (>= 2.7.0)" ], "Imports": [ "AnnotationDbi" ], "Suggests": [ "methods", "hgug4112a.db" ], "License": "The Artistic License, Version 2.0", "MD5sum": "4aedac188382447d9907d2617aa2e8e6", "NeedsCompilation": "no", "Title": "Various databases of microRNA Targets", "Description": "Various databases of microRNA Targets", "biocViews": [ "AnnotationData", "CustomDBSchema", "Homo_sapiens", "miRNA" ], "Author": "Francesco Favero", "Maintainer": "Francesco Favero ", "source.ver": "src/contrib/RmiR.Hs.miRNA_1.0.7.tar.gz", "vignettes": [ "vignettes/RmiR.Hs.miRNA/inst/doc/RmiR.Hs.miRNA.pdf", "vignettes/RmiR.Hs.miRNA/inst/doc/RmiRdb-fig1a.pdf", "vignettes/RmiR.Hs.miRNA/inst/doc/RmiRdb-fig1b.pdf", "vignettes/RmiR.Hs.miRNA/inst/doc/RmiRdb-fig2a.pdf", "vignettes/RmiR.Hs.miRNA/inst/doc/RmiRdb-fig2b.pdf" ], "vignetteTitles": [ "RmiR.Hs.miRNA Vignette", "RmiRdb-fig1a.pdf", "RmiRdb-fig1b.pdf", "RmiRdb-fig2a.pdf", "RmiRdb-fig2b.pdf" ], "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rfiles": [ "vignettes/RmiR.Hs.miRNA/inst/doc/RmiR.Hs.miRNA.R" ], "Rank": 127, "dependsOnMe": [ "RmiR" ] }, "RmiR.hsa": { "Package": "RmiR.hsa", "Version": "1.0.5", "Depends": [ "R (>= 2.7.0)" ], "Imports": [ "AnnotationDbi" ], "Suggests": [ "methods", "hgug4112a.db" ], "License": "The Artistic License, Version 2.0", "MD5sum": "f22a18d1a34d12f8fc4ba3daaf1379fd", "NeedsCompilation": "no", "Title": "Various databases of microRNA Targets", "Description": "Various databases of microRNA Targets", "biocViews": [ "AnnotationData", "CustomDBSchema", "Homo_sapiens", "miRNA" ], "Author": "Francesco Favero", "Maintainer": "Francesco Favero ", "source.ver": "src/contrib/RmiR.hsa_1.0.5.tar.gz", "vignettes": [ "vignettes/RmiR.hsa/inst/doc/RmiR.hsa.pdf", "vignettes/RmiR.hsa/inst/doc/RmiRdb-fig1a.pdf", "vignettes/RmiR.hsa/inst/doc/RmiRdb-fig1b.pdf", "vignettes/RmiR.hsa/inst/doc/RmiRdb-fig2a.pdf", "vignettes/RmiR.hsa/inst/doc/RmiRdb-fig2b.pdf" ], "vignetteTitles": [ "RmiR.hsa Vignette", "RmiRdb-fig1a.pdf", "RmiRdb-fig1b.pdf", "RmiRdb-fig2a.pdf", "RmiRdb-fig2b.pdf" ], "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rfiles": [ "vignettes/RmiR.hsa/inst/doc/RmiR.hsa.R" ], "Rank": 359 }, "RnAgilentDesign028282.db": { "Package": "RnAgilentDesign028282.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Rn.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "72cafb0f7514a81f462acb3248e21aa9", "NeedsCompilation": "no", "Title": "Agilent Chips that use Agilent design number 028282 annotation data (chip RnAgilentDesign028282)", "Description": "Agilent Chips that use Agilent design number 028282 annotation data (chip RnAgilentDesign028282) assembled using data from public repositories", "biocViews": [ "AgilentChip", "AnnotationData", "ChipDb", "Rattus_norvegicus", "RnAgilentDesign028282" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Rattus norvegicus", "manufacturer": "Agilent", "source.ver": "src/contrib/RnAgilentDesign028282.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 396 }, "rnu34.db": { "Package": "rnu34.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Rn.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "a95920bb41a2f78da82f419b245ad1a9", "NeedsCompilation": "no", "Title": "Affymetrix Rat Neurobiology U34 Array annotation data (chip rnu34)", "Description": "Affymetrix Rat Neurobiology U34 Array annotation data (chip rnu34) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Rattus_norvegicus", "rnu34" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Rattus norvegicus", "manufacturer": "Affymetrix", "source.ver": "src/contrib/rnu34.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "rnu34cdf": { "Package": "rnu34cdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "0f2564fc6ac89de4d779faf253f23ce3", "NeedsCompilation": "no", "Title": "rnu34cdf", "Description": "A package containing an environment representing the RN_U34.CDF file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Rattus_norvegicus", "cdf", "rnu34" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/rnu34cdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 779 }, "rnu34probe": { "Package": "rnu34probe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "c5ef9793a437f2bf990f6e84d31da0de", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type rnu34", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was RN-U34\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Rattus_norvegicus", "probe", "rnu34" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/rnu34probe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 824 }, "Roberts2005Annotation.db": { "Package": "Roberts2005Annotation.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Hs.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "fb28aaf1a1e0c81cf936badc674b754a", "NeedsCompilation": "no", "Title": "Roberts2005Annotation Annotation Data (Roberts2005Annotation)", "Description": "Roberts2005Annotation Annotation Data (Roberts2005Annotation) assembled using data from public repositories", "biocViews": [ "AnnotationData", "ChipDb", "Homo_sapiens", "Roberts2005Annotation", "Roberts2005AnnotationChip" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Homo sapiens", "manufacturer": "Roberts2005Annotation", "source.ver": "src/contrib/Roberts2005Annotation.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 726 }, "rta10probeset.db": { "Package": "rta10probeset.db", "Version": "8.7.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.39.4)", "org.Rn.eg.db (>= 3.4.2)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "62d35f5ac75a51c2ac91730fd681d031", "NeedsCompilation": "no", "Title": "Affymetrix rta10 annotation data (chip rta10probeset)", "Description": "Affymetrix rta10 annotation data (chip rta10probeset) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Rattus_norvegicus", "rta10probeset" ], "Author": "James W. MacDonald", "Maintainer": "Biocore Package Maintainer ", "organism": "Rattus norvegicus", "manufacturer": "Affymetrix", "source.ver": "src/contrib/rta10probeset.db_8.7.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 824 }, "rta10transcriptcluster.db": { "Package": "rta10transcriptcluster.db", "Version": "8.7.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.39.4)", "org.Rn.eg.db (>= 3.4.2)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "c6a854395aec7296ffb7d98534b112f7", "NeedsCompilation": "no", "Title": "Affymetrix rta10 annotation data (chip rta10transcriptcluster)", "Description": "Affymetrix rta10 annotation data (chip rta10transcriptcluster) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Rattus_norvegicus", "rta10transcriptcluster" ], "Author": "James W. MacDonald", "Maintainer": "Biocore Package Maintainer ", "organism": "Rattus norvegicus", "manufacturer": "Affymetrix", "source.ver": "src/contrib/rta10transcriptcluster.db_8.7.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "rtu34.db": { "Package": "rtu34.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Rn.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "c598b5caedc421e104e2e541f396d213", "NeedsCompilation": "no", "Title": "Affymetrix Rat Toxicology U34 Array annotation data (chip rtu34)", "Description": "Affymetrix Rat Toxicology U34 Array annotation data (chip rtu34) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Rattus_norvegicus", "rtu34" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Rattus norvegicus", "manufacturer": "Affymetrix", "source.ver": "src/contrib/rtu34.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "rtu34cdf": { "Package": "rtu34cdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "317abfcca319d01eb14f16efa6d91da1", "NeedsCompilation": "no", "Title": "rtu34cdf", "Description": "A package containing an environment representing the RT_U34.cdf file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Rattus_norvegicus", "cdf", "rtu34" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/rtu34cdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "rtu34probe": { "Package": "rtu34probe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "1778d857a61bf181b80b9fcf46ebd2c3", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type rtu34", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was RT-U34\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Rattus_norvegicus", "probe", "rtu34" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/rtu34probe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 779 }, "rwgcod.db": { "Package": "rwgcod.db", "Version": "3.4.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.31.18)", "org.Rn.eg.db (>= 3.2.1)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "c8d2fa81b6f03c4ee629a0883431e5fd", "NeedsCompilation": "no", "Title": "Codelink Rat Whole Genome Bioarray (~34 000 rat gene targets) annotation data (chip rwgcod)", "Description": "Codelink Rat Whole Genome Bioarray (~34 000 rat gene targets) annotation data (chip rwgcod) assembled using data from public repositories", "biocViews": [ "AnnotationData", "ChipDb", "CodelinkChip", "Rattus_norvegicus", "rwgcod" ], "Author": "Diego Diez", "Maintainer": "Diego Diez ", "organism": "Rattus norvegicus", "manufacturer": "Codelink", "source.ver": "src/contrib/rwgcod.db_3.4.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 779 }, "saureuscdf": { "Package": "saureuscdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "d01883e4c3dd99f32012e6dbab8cdb8b", "NeedsCompilation": "no", "Title": "saureuscdf", "Description": "A package containing an environment representing the S_aureus.cdf file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Staphylococcus_aureus", "cdf", "saureus" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/saureuscdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 529 }, "saureusprobe": { "Package": "saureusprobe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "eb4e91b10a536cbde4ecc08951ddf4d3", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type saureus", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was S\\_aureus\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Staphylococcus_aureus", "probe", "saureus" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/saureusprobe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "SHDZ.db": { "Package": "SHDZ.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Hs.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "63c4439a272a5cd0c4746e9e53a7bdc7", "NeedsCompilation": "no", "Title": "SHDZ http://genome-www5.stanford.edu/ Annotation Data (SHDZ)", "Description": "SHDZ http://genome-www5.stanford.edu/ Annotation Data (SHDZ) assembled using data from public repositories", "biocViews": [ "AnnotationData", "ChipDb", "Homo_sapiens", "SHDZ", "Stanford Microarray DatabaseChip" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Homo sapiens", "manufacturer": "Stanford Microarray Database", "source.ver": "src/contrib/SHDZ.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 779 }, "SIFT.Hsapiens.dbSNP132": { "Package": "SIFT.Hsapiens.dbSNP132", "Version": "1.0.2", "Depends": [ "VariantAnnotation", "RSQLite (>= 0.11.0)" ], "Imports": [ "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "c374f0bf4c99357cfe99e0b192c00d75", "NeedsCompilation": "no", "Title": "SIFT Predictions for Homo sapiens dbSNP build 132", "Description": "Database of SIFT predictions for Homo sapiens dbSNP build 132", "biocViews": [ "AnnotationData", "Genetics", "Homo_sapiens" ], "Author": "Valerie Obenchain", "Maintainer": "Valerie Obenchain ", "organism": "Homo sapiens", "source.ver": "src/contrib/SIFT.Hsapiens.dbSNP132_1.0.2.tar.gz", "hasREADME": false, "hasNEWS": true, "hasINSTALL": false, "hasLICENSE": false, "Rank": 217, "suggestsMe": [ "VariantAnnotation" ] }, "SIFT.Hsapiens.dbSNP137": { "Package": "SIFT.Hsapiens.dbSNP137", "Version": "1.0.0", "Depends": [ "VariantAnnotation (>= 1.9.15)", "RSQLite (>= 0.11.0)" ], "Imports": [ "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "3c3e73f826399af5ff368d1aab12cfd1", "NeedsCompilation": "no", "Title": "PROVEAN/SIFT Predictions for Homo sapiens dbSNP build 137", "Description": "Database of PROVEAN/SIFT predictions for Homo sapiens dbSNP build 137", "biocViews": [ "AnnotationData", "Genetics", "Homo_sapiens" ], "Author": "Valerie Obenchain", "Maintainer": "Valerie Obenchain ", "organism": "Homo sapiens", "source.ver": "src/contrib/SIFT.Hsapiens.dbSNP137_1.0.0.tar.gz", "hasREADME": false, "hasNEWS": true, "hasINSTALL": false, "hasLICENSE": false, "Rank": 189, "suggestsMe": [ "VariantAnnotation", "VariantFiltering" ] }, "SNPlocs.Hsapiens.dbSNP.20101109": { "Package": "SNPlocs.Hsapiens.dbSNP.20101109", "Version": "0.99.7", "Depends": [ "R (>= 2.10)", "IRanges", "GenomicRanges" ], "Imports": [ "methods", "S4Vectors", "IRanges", "GenomicRanges" ], "Suggests": [ "Biostrings", "BSgenome (>= 1.16.1)", "BSgenome.Hsapiens.UCSC.hg19" ], "License": "Artistic-2.0", "MD5sum": "d18cef7792978f5827025671b1866230", "NeedsCompilation": "no", "Title": "SNP locations for Homo sapiens (dbSNP Build 132)", "Description": "SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 132. The source data files used for this package were created by NCBI on 9 November 2010 and contain SNPs mapped to reference genome GRCh37. WARNING: Note that the GRCh37 genome is the same as the hg19 genome from UCSC except for the mitochondrion chromosome. Therefore, the SNPs in this package can be \"injected\" in BSgenome.Hsapiens.UCSC.hg19 but this injection will exclude chrM (i.e. nothing will be injected in that sequence).", "biocViews": [ "AnnotationData", "Genetics", "Homo_sapiens" ], "Author": "Herve Pages", "Maintainer": "H. Pages ", "organism": "Homo sapiens", "source.ver": "src/contrib/SNPlocs.Hsapiens.dbSNP.20101109_0.99.7.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 179, "suggestsMe": [ "ceu1kg", "VariantAnnotation" ] }, "SNPlocs.Hsapiens.dbSNP.20120608": { "Package": "SNPlocs.Hsapiens.dbSNP.20120608", "Version": "0.99.11", "Depends": [ "R (>= 2.10)", "IRanges", "GenomicRanges", "BSgenome (>= 1.25.6)" ], "Imports": [ "methods", "utils", "IRanges", "GenomicRanges", "BSgenome" ], "Suggests": [ "Biostrings", "BSgenome.Hsapiens.UCSC.hg19 (>= 1.3.19)" ], "License": "Artistic-2.0", "MD5sum": "6f06b9f619994b2a9b0fd780ead2f0cc", "NeedsCompilation": "no", "Title": "SNP locations for Homo sapiens (dbSNP Build 137)", "Description": "SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 137. The source data files used for this package were created by NCBI on June 7-8, 2012, and contain SNPs mapped to reference genome GRCh37.p5. WARNING: Note that the GRCh37.p5 genome is a patched version of GRCh37 but the patch doesn't alter chromosomes 1-22, X, Y, MT. GRCh37 itself is the same as the hg19 genome from UCSC *except* for the mitochondrion chromosome. Therefore, the SNPs in this package can be \"injected\" in BSgenome.Hsapiens.UCSC.hg19 and they will land at the correct location but this injection will exclude chrM (i.e. nothing will be injected in that sequence). IMPORTANT NOTE: This package is deprecated. Please use a SNPlocs data package based on a more recent dbSNP BUILD instead (e.g. BUILD 144 or BUILD 149). You can call BSgenome::available.SNPs() from R to get the list of available SNPlocs data packages.", "biocViews": [ "AnnotationData", "Genetics", "Homo_sapiens" ], "Author": "Herve Pages", "Maintainer": "H. Pages ", "organism": "Homo sapiens", "PackageStatus": "Deprecated", "source.ver": "src/contrib/SNPlocs.Hsapiens.dbSNP.20120608_0.99.11.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 167, "suggestsMe": [ "motifbreakR" ] }, "SNPlocs.Hsapiens.dbSNP141.GRCh38": { "Package": "SNPlocs.Hsapiens.dbSNP141.GRCh38", "Version": "0.99.11", "Depends": [ "R (>= 2.10)", "S4Vectors", "IRanges", "GenomeInfoDb", "GenomicRanges", "BSgenome (>= 1.33.9)" ], "Imports": [ "methods", "utils", "S4Vectors", "IRanges", "GenomeInfoDb", "GenomicRanges", "BSgenome" ], "Suggests": [ "Biostrings", "BSgenome.Hsapiens.NCBI.GRCh38 (>= 1.3.19)" ], "License": "Artistic-2.0", "MD5sum": "40b55447c33e9d72c2ae8e8fe7f484be", "NeedsCompilation": "no", "Title": "SNP locations for Homo sapiens (dbSNP Build 141)", "Description": "SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 141. The source data files used for this package were created by NCBI on May 1st, 2014, and contain SNPs mapped to reference genome GRCh38. Note that these SNPs can be \"injected\" in BSgenome.Hsapiens.NCBI.GRCh38 or in BSgenome.Hsapiens.UCSC.hg38. IMPORTANT NOTE: This package is deprecated. Please use a SNPlocs data package based on a more recent dbSNP BUILD instead (e.g. BUILD 144 or BUILD 149). You can call BSgenome::available.SNPs() from R to get the list of available SNPlocs data packages.", "biocViews": [ "AnnotationData", "Genetics", "Homo_sapiens", "SNPlocs" ], "Author": "Herve Pages", "Maintainer": "H. Pages ", "organism": "Homo sapiens", "PackageStatus": "Deprecated", "source.ver": "src/contrib/SNPlocs.Hsapiens.dbSNP141.GRCh38_0.99.11.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "suggestsMe": [ "genotypeeval", "XtraSNPlocs.Hsapiens.dbSNP141.GRCh38" ], "Rank": 176 }, "SNPlocs.Hsapiens.dbSNP142.GRCh37": { "Package": "SNPlocs.Hsapiens.dbSNP142.GRCh37", "Version": "0.99.5", "Depends": [ "R (>= 2.10)", "IRanges", "GenomeInfoDb", "GenomicRanges", "BSgenome (>= 1.25.6)" ], "Imports": [ "methods", "utils", "IRanges", "GenomeInfoDb", "GenomicRanges", "BSgenome" ], "Suggests": [ "Biostrings", "BSgenome.Hsapiens.UCSC.hg19", "BSgenome.Hsapiens.UCSC.hg19.masked (>= 1.3.19)" ], "License": "Artistic-2.0", "MD5sum": "3038e4f766d3e24f5b7286961a03ba35", "NeedsCompilation": "no", "Title": "SNP locations for Homo sapiens (dbSNP Build 142)", "Description": "SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 142. The source data files used for this package were created by NCBI on October 14, 2014, and contain SNPs mapped to reference genome GRCh37.p13. WARNING: Note that the GRCh37.p13 genome is a patched version of GRCh37 but the patch doesn't alter chromosomes 1-22, X, Y, MT. GRCh37 itself is the same as the hg19 genome from UCSC *except* for the mitochondrion chromosome. Therefore, the SNPs in this package can be \"injected\" in BSgenome.Hsapiens.UCSC.hg19 and they will land at the correct location but this injection will exclude chrM (i.e. nothing will be injected in that sequence).", "biocViews": [ "AnnotationData", "Genetics", "Homo_sapiens" ], "Author": "Herv\\'e Pag\\`es", "Maintainer": "Simon Coetzee ", "organism": "Homo sapiens", "source.ver": "src/contrib/SNPlocs.Hsapiens.dbSNP142.GRCh37_0.99.5.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 139, "suggestsMe": [ "motifbreakR" ] }, "SNPlocs.Hsapiens.dbSNP144.GRCh37": { "Package": "SNPlocs.Hsapiens.dbSNP144.GRCh37", "Version": "0.99.20", "Depends": [ "BSgenome (>= 1.43.4)" ], "Imports": [ "methods", "utils", "BiocGenerics", "S4Vectors", "IRanges", "GenomeInfoDb", "GenomicRanges", "BSgenome" ], "Suggests": [ "Biostrings", "BSgenome.Hsapiens.UCSC.hg19" ], "License": "Artistic-2.0", "MD5sum": "bd338bb583cacc18f210e871dac79ebf", "NeedsCompilation": "no", "Title": "SNP locations for Homo sapiens (dbSNP Build 144)", "Description": "SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 144. The source data files used for this package were created by NCBI on May 29-30, 2015, and contain SNPs mapped to reference genome GRCh37.p13. WARNING: Note that the GRCh37.p13 genome is a patched version of GRCh37. However the patch doesn't alter chromosomes 1-22, X, Y, MT. GRCh37 itself is the same as the hg19 genome from UCSC *except* for the mitochondrion chromosome. Therefore, the SNPs in this package can be \"injected\" in BSgenome.Hsapiens.UCSC.hg19 and they will land at the correct position but this injection will exclude chrM (i.e. nothing will be injected in that sequence).", "biocViews": [ "AnnotationData", "Genetics", "Homo_sapiens", "SNPlocs" ], "Author": "Hervé Pagès", "Maintainer": "H. Pagès ", "organism": "Homo sapiens", "source.ver": "src/contrib/SNPlocs.Hsapiens.dbSNP144.GRCh37_0.99.20.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "suggestsMe": [ "AllelicImbalance", "cheung2010", "GenomicScores", "GGtools", "MafDb.1Kgenomes.phase1.hs37d5", "MafDb.1Kgenomes.phase3.hs37d5", "MafDb.ESP6500SI.V2.SSA137.hs37d5", "MafDb.ExAC.r1.0.hs37d5", "MafDb.ExAC.r1.0.nonTCGA.hs37d5", "MafDb.gnomAD.r2.0.1.hs37d5", "MafDb.gnomADex.r2.0.1.hs37d5", "MafDb.TOPMed.freeze5.hg19", "VariantFiltering", "XtraSNPlocs.Hsapiens.dbSNP144.GRCh37" ], "Rank": 72, "dependsOnMe": [ "eQTL" ] }, "SNPlocs.Hsapiens.dbSNP144.GRCh38": { "Package": "SNPlocs.Hsapiens.dbSNP144.GRCh38", "Version": "0.99.20", "Depends": [ "BSgenome (>= 1.43.4)" ], "Imports": [ "methods", "utils", "BiocGenerics", "S4Vectors", "IRanges", "GenomeInfoDb", "GenomicRanges", "BSgenome" ], "Suggests": [ "Biostrings", "BSgenome.Hsapiens.UCSC.hg38" ], "License": "Artistic-2.0", "MD5sum": "128c95e327adf72ae137fb5ae58270fc", "NeedsCompilation": "no", "Title": "SNP locations for Homo sapiens (dbSNP Build 144)", "Description": "SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 144. The source data files used for this package were created by NCBI on May 30, 2015, and contain SNPs mapped to reference genome GRCh38.p2 (a patched version of GRCh38 that doesn't alter chromosomes 1-22, X, Y, MT). Note that these SNPs can be \"injected\" in BSgenome.Hsapiens.NCBI.GRCh38 or in BSgenome.Hsapiens.UCSC.hg38.", "biocViews": [ "AnnotationData", "Genetics", "Homo_sapiens", "SNPlocs" ], "Author": "Hervé Pagès", "Maintainer": "H. Pagès ", "organism": "Homo sapiens", "source.ver": "src/contrib/SNPlocs.Hsapiens.dbSNP144.GRCh38_0.99.20.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "suggestsMe": [ "BSgenome", "GenomicFeatures", "XtraSNPlocs.Hsapiens.dbSNP144.GRCh38" ], "Rank": 179 }, "SNPlocs.Hsapiens.dbSNP149.GRCh38": { "Package": "SNPlocs.Hsapiens.dbSNP149.GRCh38", "Version": "0.99.20", "Depends": [ "BSgenome (>= 1.43.4)" ], "Imports": [ "methods", "utils", "BiocGenerics", "S4Vectors", "IRanges", "GenomeInfoDb", "GenomicRanges", "BSgenome" ], "Suggests": [ "Biostrings", "BSgenome.Hsapiens.UCSC.hg38" ], "License": "Artistic-2.0", "MD5sum": "8cf749a8649a53449066b54160a3745c", "NeedsCompilation": "no", "Title": "SNP locations for Homo sapiens (dbSNP Build 149)", "Description": "SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 149. The source data files used for this package were created by NCBI between November 8-12, 2016, and contain SNPs mapped to reference genome GRCh38.p7 (a patched version of GRCh38 that doesn't alter chromosomes 1-22, X, Y, MT). Note that these SNPs can be \"injected\" in BSgenome.Hsapiens.NCBI.GRCh38 or in BSgenome.Hsapiens.UCSC.hg38.", "biocViews": [ "AnnotationData", "Genetics", "Homo_sapiens", "SNPlocs" ], "Author": "Hervé Pagès", "Maintainer": "H. Pagès ", "organism": "Homo sapiens", "source.ver": "src/contrib/SNPlocs.Hsapiens.dbSNP149.GRCh38_0.99.20.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "suggestsMe": [ "MafDb.1Kgenomes.phase1.GRCh38", "MafDb.1Kgenomes.phase3.GRCh38", "MafDb.ESP6500SI.V2.SSA137.GRCh38", "MafDb.ExAC.r1.0.GRCh38", "MafDb.ExAC.r1.0.nonTCGA.GRCh38", "MafDb.gnomAD.r2.0.1.GRCh38", "MafDb.gnomADex.r2.0.1.GRCh38", "MafDb.TOPMed.freeze5.hg38" ], "Rank": 529 }, "SNPlocs.Hsapiens.dbSNP150.GRCh38": { "Package": "SNPlocs.Hsapiens.dbSNP150.GRCh38", "Version": "0.99.20", "Depends": [ "BSgenome (>= 1.43.4)" ], "Imports": [ "methods", "utils", "BiocGenerics", "S4Vectors", "IRanges", "GenomeInfoDb", "GenomicRanges", "BSgenome" ], "Suggests": [ "Biostrings", "BSgenome.Hsapiens.UCSC.hg38" ], "License": "Artistic-2.0", "MD5sum": "575a7aaa9125d52ca0634b3ac586c9a7", "NeedsCompilation": "no", "Title": "SNP locations for Homo sapiens (dbSNP Build 150)", "Description": "SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 150. The source data files used for this package were created by NCBI between March 12-14, 2017, and contain SNPs mapped to reference genome GRCh38.p7 (a patched version of GRCh38 that doesn't alter chromosomes 1-22, X, Y, MT). Note that these SNPs can be \"injected\" in BSgenome.Hsapiens.NCBI.GRCh38 or in BSgenome.Hsapiens.UCSC.hg38.", "biocViews": [ "AnnotationData", "Genetics", "Homo_sapiens", "SNPlocs" ], "Author": "Hervé Pagès", "Maintainer": "H. Pagès ", "organism": "Homo sapiens", "source.ver": "src/contrib/SNPlocs.Hsapiens.dbSNP150.GRCh38_0.99.20.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 158, "importsMe": [ "trena" ] }, "SNPlocs.Hsapiens.dbSNP151.GRCh38": { "Package": "SNPlocs.Hsapiens.dbSNP151.GRCh38", "Version": "0.99.20", "Depends": [ "BSgenome (>= 1.43.4)" ], "Imports": [ "methods", "utils", "BiocGenerics", "S4Vectors", "IRanges", "GenomeInfoDb", "GenomicRanges", "BSgenome" ], "Suggests": [ "Biostrings", "BSgenome.Hsapiens.UCSC.hg38" ], "License": "Artistic-2.0", "MD5sum": "0c1637530d42b10d3e6b8dead09454e7", "NeedsCompilation": "no", "Title": "SNP locations for Homo sapiens (dbSNP Build 151)", "Description": "SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 151. The source data files used for this package were created by NCBI between February 16-22, 2018, and contain SNPs mapped to reference genome GRCh38.p7 (a patched version of GRCh38 that doesn't alter chromosomes 1-22, X, Y, MT). Note that these SNPs can be \"injected\" in BSgenome.Hsapiens.NCBI.GRCh38 or in BSgenome.Hsapiens.UCSC.hg38.", "biocViews": [ "AnnotationData", "Genetics", "Homo_sapiens", "SNPlocs" ], "Author": "Hervé Pagès", "Maintainer": "H. Pagès ", "organism": "Homo sapiens", "source.ver": "src/contrib/SNPlocs.Hsapiens.dbSNP151.GRCh38_0.99.20.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 910 }, "soybeancdf": { "Package": "soybeancdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "a18e0ba5dbcf2291bdec91091dc528e6", "NeedsCompilation": "no", "Title": "soybeancdf", "Description": "A package containing an environment representing the Soybean.cdf file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Heterodera_glycines", "Phytophthora_sojae", "cdf", "soybean" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/soybeancdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 278 }, "soybeanprobe": { "Package": "soybeanprobe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "3057a5c387ff35b6c647c4db27041a13", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type soybean", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Soybean\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Heterodera_glycines", "Phytophthora_sojae", "probe", "soybean" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/soybeanprobe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 726 }, "sugarcanecdf": { "Package": "sugarcanecdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "f66d51868068f83d3693d3cb05be418a", "NeedsCompilation": "no", "Title": "sugarcanecdf", "Description": "A package containing an environment representing the Sugar_Cane.cdf file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Saccharum_officinarum", "cdf", "sugarcane" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/sugarcanecdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "sugarcaneprobe": { "Package": "sugarcaneprobe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "66c101ac73e9235d258b9f996c42778e", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type sugarcane", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Sugar\\_Cane\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Saccharum_officinarum", "probe", "sugarcane" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/sugarcaneprobe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 824 }, "targetscan.Hs.eg.db": { "Package": "targetscan.Hs.eg.db", "Version": "0.6.1", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.18.3)" ], "Imports": [ "methods", "AnnotationDbi" ], "License": "file LICENSE", "License_restricts_use": "no", "MD5sum": "d10569315400f6c1b95ad2688632b6de", "NeedsCompilation": "no", "Title": "TargetScan miRNA target predictions for human", "Description": "TargetScan miRNA target predictions for human assembled using data from the TargetScan website. TargetScan predicts biological targets of miRNAs by searching for the presence of conserved 8mer and 7mer sites that match the seed region of each miRNA. Also identified are sites with mismatches in the seed region that are compensated by conserved 3' pairing. In mammals, predictions are ranked based on the predicted efficacy of targeting as calculated using the context scores of the sites.", "biocViews": [ "AnnotationData", "FunctionalAnnotation" ], "Author": "Gabor Csardi ", "Maintainer": "James F. Reid ", "source.ver": "src/contrib/targetscan.Hs.eg.db_0.6.1.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": true, "Rank": 153, "suggestsMe": [ "BioCor", "eisa" ], "importsMe": [ "isomiRs" ] }, "targetscan.Mm.eg.db": { "Package": "targetscan.Mm.eg.db", "Version": "0.6.1", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.18.3)" ], "Imports": [ "methods", "AnnotationDbi" ], "License": "file LICENSE", "License_restricts_use": "no", "MD5sum": "1830815c9d1383739f1ff152da0508c5", "NeedsCompilation": "no", "Title": "TargetScan miRNA target predictions for mouse", "Description": "TargetScan miRNA target predictions for mouse assembled using data from the TargetScan website. TargetScan predicts biological targets of miRNAs by searching for the presence of conserved 8mer and 7mer sites that match the seed region of each miRNA. Also identified are sites with mismatches in the seed region that are compensated by conserved 3' pairing. In mammals, predictions are ranked based on the predicted efficacy of targeting as calculated using the context scores of the sites.", "biocViews": [ "AnnotationData", "FunctionalAnnotation" ], "Author": "Gabor Csardi ", "Maintainer": "James F. Reid ", "source.ver": "src/contrib/targetscan.Mm.eg.db_0.6.1.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": true, "Rank": 291, "suggestsMe": [ "MmPalateMiRNA" ] }, "test1cdf": { "Package": "test1cdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "8c94708b49ccc7bbf127485155970b9b", "NeedsCompilation": "no", "Title": "test1cdf", "Description": "A package containing an environment representing the Test1.CDF file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "test1" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/test1cdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "test2cdf": { "Package": "test2cdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "0d1c20d6450dfc83d62214be9dc46b5f", "NeedsCompilation": "no", "Title": "test2cdf", "Description": "A package containing an environment representing the Test2.CDF file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "test2" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/test2cdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "test3cdf": { "Package": "test3cdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "9904e7fa6599f68400a9b77d0caa159a", "NeedsCompilation": "no", "Title": "test3cdf", "Description": "A package containing an environment representing the Test3.CDF file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "test3" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/test3cdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 359, "suggestsMe": [ "AffyExpress" ] }, "test3probe": { "Package": "test3probe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "ffcbfee4e5c486fd03b2b9b64820340c", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type test3", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Test3\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "probe", "test3" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/test3probe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 529 }, "tomatocdf": { "Package": "tomatocdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "200efc0637788d4bd3263fc9183c1aa6", "NeedsCompilation": "no", "Title": "tomatocdf", "Description": "A package containing an environment representing the Tomato.cdf file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Solanum_lycopersicum", "cdf", "tomato" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/tomatocdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 396 }, "tomatoprobe": { "Package": "tomatoprobe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "72020469f35c19399fd0be9eaffd8e77", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type tomato", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Tomato\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Solanum_lycopersicum", "probe", "tomato" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/tomatoprobe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "TxDb.Athaliana.BioMart.plantsmart22": { "Package": "TxDb.Athaliana.BioMart.plantsmart22", "Version": "3.0.1", "Depends": [ "GenomicFeatures (>= 1.17.17)" ], "Imports": [ "GenomicFeatures", "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "3bab54295e300fedba99eef521220e50", "NeedsCompilation": "no", "Title": "Annotation package for TxDb object(s)", "Description": "Exposes an annotation databases generated from BioMart by exposing these as TxDb objects", "biocViews": [ "AnnotationData", "Arabidopsis_thaliana", "Genetics", "TxDb" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Arabidopsis thaliana", "source.ver": "src/contrib/TxDb.Athaliana.BioMart.plantsmart22_3.0.1.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 79, "suggestsMe": [ "GenomicRanges", "waveTiling" ], "dependsOnMe": [ "annotation" ] }, "TxDb.Athaliana.BioMart.plantsmart25": { "Package": "TxDb.Athaliana.BioMart.plantsmart25", "Version": "3.1.3", "Depends": [ "GenomicFeatures (>= 1.19.32)" ], "Imports": [ "GenomicFeatures", "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "eb007c07317b9717c76949e5ed999978", "NeedsCompilation": "no", "Title": "Annotation package for TxDb object(s)", "Description": "Exposes an annotation databases generated from BioMart by exposing these as TxDb objects", "biocViews": [ "AnnotationData", "Arabidopsis_thaliana", "Genetics", "TxDb" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Arabidopsis thaliana", "source.ver": "src/contrib/TxDb.Athaliana.BioMart.plantsmart25_3.1.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 396 }, "TxDb.Athaliana.BioMart.plantsmart28": { "Package": "TxDb.Athaliana.BioMart.plantsmart28", "Version": "3.2.2", "Depends": [ "GenomicFeatures (>= 1.21.30)" ], "Imports": [ "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "9ed52284f01e08fc382db179b544bb17", "NeedsCompilation": "no", "Title": "Annotation package for TxDb object(s)", "Description": "Exposes an annotation databases generated from BioMart by exposing these as TxDb objects", "biocViews": [ "AnnotationData", "Arabidopsis_thaliana", "Genetics", "TxDb" ], "Author": "Marc Carlson, Bioconductor Package Maintainer [cre]", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Arabidopsis thaliana", "source.ver": "src/contrib/TxDb.Athaliana.BioMart.plantsmart28_3.2.2.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 211 }, "TxDb.Btaurus.UCSC.bosTau8.refGene": { "Package": "TxDb.Btaurus.UCSC.bosTau8.refGene", "Version": "3.4.3", "Depends": [ "GenomicFeatures (>= 1.31.10)" ], "Imports": [ "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "751ba594d0d0f7dfc4f89e76ea9ed367", "NeedsCompilation": "no", "Title": "Annotation package for TxDb object(s)", "Description": "Exposes an annotation databases generated from UCSC by exposing these as TxDb objects", "biocViews": [ "AnnotationData", "Bos_taurus", "Genetics", "TxDb" ], "Author": "Bioconductor Core Team, Bioconductor Package Maintainer [cre]", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Bos taurus", "source.ver": "src/contrib/TxDb.Btaurus.UCSC.bosTau8.refGene_3.4.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "TxDb.Celegans.UCSC.ce11.refGene": { "Package": "TxDb.Celegans.UCSC.ce11.refGene", "Version": "3.4.3", "Depends": [ "GenomicFeatures (>= 1.31.10)" ], "Imports": [ "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "62144dbefc0beb1bb1c2e0db3757179c", "NeedsCompilation": "no", "Title": "Annotation package for TxDb object(s)", "Description": "Exposes an annotation databases generated from UCSC by exposing these as TxDb objects", "biocViews": [ "AnnotationData", "Caenorhabditis_elegans", "Genetics", "TxDb" ], "Author": "Bioconductor Core Team, Bioconductor Package Maintainer [cre]", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Caenorhabditis elegans", "source.ver": "src/contrib/TxDb.Celegans.UCSC.ce11.refGene_3.4.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 337 }, "TxDb.Celegans.UCSC.ce6.ensGene": { "Package": "TxDb.Celegans.UCSC.ce6.ensGene", "Version": "3.2.2", "Depends": [ "GenomicFeatures (>= 1.21.30)" ], "Imports": [ "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "215c2edd440a3df8229fe6a75b431aa8", "NeedsCompilation": "no", "Title": "Annotation package for TxDb object(s)", "Description": "Exposes an annotation databases generated from UCSC by exposing these as TxDb objects", "biocViews": [ "AnnotationData", "Caenorhabditis_elegans", "Genetics", "TxDb" ], "Author": "Marc Carlson, Bioconductor Package Maintainer [cre]", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Caenorhabditis elegans", "source.ver": "src/contrib/TxDb.Celegans.UCSC.ce6.ensGene_3.2.2.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "suggestsMe": [ "BSgenome.Celegans.UCSC.ce6" ], "Rank": 50, "importsMe": [ "ChIPQC" ] }, "TxDb.Cfamiliaris.UCSC.canFam3.refGene": { "Package": "TxDb.Cfamiliaris.UCSC.canFam3.refGene", "Version": "3.4.3", "Depends": [ "GenomicFeatures (>= 1.31.10)" ], "Imports": [ "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "626e517c4c7a947215d95d50264ebc17", "NeedsCompilation": "no", "Title": "Annotation package for TxDb object(s)", "Description": "Exposes an annotation databases generated from UCSC by exposing these as TxDb objects", "biocViews": [ "AnnotationData", "Canis_familiaris", "Genetics", "TxDb" ], "Author": "Bioconductor Core Team, Bioconductor Package Maintainer [cre]", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Canis familiaris", "source.ver": "src/contrib/TxDb.Cfamiliaris.UCSC.canFam3.refGene_3.4.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 824 }, "TxDb.Dmelanogaster.UCSC.dm3.ensGene": { "Package": "TxDb.Dmelanogaster.UCSC.dm3.ensGene", "Version": "3.2.2", "Depends": [ "GenomicFeatures (>= 1.21.30)" ], "Imports": [ "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "46b7ffe0c516edf8a2a3b5d78e0d8b67", "NeedsCompilation": "no", "Title": "Annotation package for TxDb object(s)", "Description": "Exposes an annotation databases generated from UCSC by exposing these as TxDb objects", "biocViews": [ "AnnotationData", "Drosophila_melanogaster", "Genetics", "TxDb" ], "Author": "Marc Carlson, Bioconductor Package Maintainer [cre]", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Drosophila melanogaster", "source.ver": "src/contrib/TxDb.Dmelanogaster.UCSC.dm3.ensGene_3.2.2.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "suggestsMe": [ "annotatr", "BSgenome.Dmelanogaster.UCSC.dm3", "chipenrich.data", "FourCSeq", "GenomeInfoDb", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "Rsamtools" ], "Rank": 30, "importsMe": [ "ChIPQC" ] }, "TxDb.Dmelanogaster.UCSC.dm6.ensGene": { "Package": "TxDb.Dmelanogaster.UCSC.dm6.ensGene", "Version": "3.4.1", "Depends": [ "GenomicFeatures (>= 1.27.13)" ], "Imports": [ "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "539737dcb0b3d6d0134f5fe2ecf4e835", "NeedsCompilation": "no", "Title": "Annotation package for TxDb object(s)", "Description": "Exposes an annotation databases generated from UCSC by exposing these as TxDb objects", "biocViews": [ "AnnotationData", "Drosophila_melanogaster", "Genetics", "TxDb" ], "Author": "Bioconductor Core Team, Bioconductor Package Maintainer [cre]", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Drosophila melanogaster", "source.ver": "src/contrib/TxDb.Dmelanogaster.UCSC.dm6.ensGene_3.4.1.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 67, "suggestsMe": [ "annotatr", "chipenrich.data" ] }, "TxDb.Drerio.UCSC.danRer10.refGene": { "Package": "TxDb.Drerio.UCSC.danRer10.refGene", "Version": "3.4.3", "Depends": [ "GenomicFeatures (>= 1.31.10)" ], "Imports": [ "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "db746342bff2cd07c9e02b5f5840fb2b", "NeedsCompilation": "no", "Title": "Annotation package for TxDb object(s)", "Description": "Exposes an annotation databases generated from UCSC by exposing these as TxDb objects", "biocViews": [ "AnnotationData", "Danio_rerio", "Genetics", "TxDb" ], "Author": "Bioconductor Core Team, Bioconductor Package Maintainer [cre]", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Danio rerio", "source.ver": "src/contrib/TxDb.Drerio.UCSC.danRer10.refGene_3.4.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 221, "suggestsMe": [ "chipenrich.data", "CNEr" ] }, "TxDb.Ggallus.UCSC.galGal4.refGene": { "Package": "TxDb.Ggallus.UCSC.galGal4.refGene", "Version": "3.4.3", "Depends": [ "GenomicFeatures (>= 1.31.10)" ], "Imports": [ "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "e8e66384a195c6b4185874f2dc716810", "NeedsCompilation": "no", "Title": "Annotation package for TxDb object(s)", "Description": "Exposes an annotation databases generated from UCSC by exposing these as TxDb objects", "biocViews": [ "AnnotationData", "Gallus_gallus", "Genetics", "TxDb" ], "Author": "Bioconductor Core Team, Bioconductor Package Maintainer [cre]", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Gallus gallus", "source.ver": "src/contrib/TxDb.Ggallus.UCSC.galGal4.refGene_3.4.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 779 }, "TxDb.Ggallus.UCSC.galGal5.refGene": { "Package": "TxDb.Ggallus.UCSC.galGal5.refGene", "Version": "3.4.3", "Depends": [ "GenomicFeatures (>= 1.31.10)" ], "Imports": [ "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "8c2ebd637c6da4b7916803f8686e6479", "NeedsCompilation": "no", "Title": "Annotation package for TxDb object(s)", "Description": "Exposes an annotation databases generated from UCSC by exposing these as TxDb objects", "biocViews": [ "AnnotationData", "Gallus_gallus", "Genetics", "TxDb" ], "Author": "Bioconductor Core Team, Bioconductor Package Maintainer [cre]", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Gallus gallus", "source.ver": "src/contrib/TxDb.Ggallus.UCSC.galGal5.refGene_3.4.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 529, "suggestsMe": [ "annotatr" ] }, "TxDb.Hsapiens.BioMart.igis": { "Package": "TxDb.Hsapiens.BioMart.igis", "Version": "2.3.2", "Depends": [ "GenomicFeatures (>= 1.17.22)" ], "Imports": [ "GenomicFeatures", "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "75b793928d29bcd3f069b5986bc2cfae", "NeedsCompilation": "no", "Title": "Annotation package for TxDb object(s)", "Description": "Exposes an annotation databases generated from BioMart by exposing these as TxDb objects", "biocViews": [ "AnnotationData", "Genetics", "Homo_sapiens", "TxDb" ], "Author": "person", "Maintainer": "Gabriel Becker ", "organism": "Homo sapiens", "source.ver": "src/contrib/TxDb.Hsapiens.BioMart.igis_2.3.2.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 396 }, "TxDb.Hsapiens.UCSC.hg18.knownGene": { "Package": "TxDb.Hsapiens.UCSC.hg18.knownGene", "Version": "3.2.2", "Depends": [ "GenomicFeatures (>= 1.21.30)" ], "Imports": [ "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "e8b32a672e87345c72bb30be73d1e2d6", "NeedsCompilation": "no", "Title": "Annotation package for TxDb object(s)", "Description": "Exposes an annotation databases generated from UCSC by exposing these as TxDb objects", "biocViews": [ "AnnotationData", "Genetics", "Homo_sapiens", "TxDb" ], "Author": "Marc Carlson, Bioconductor Package Maintainer [cre]", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Homo sapiens", "source.ver": "src/contrib/TxDb.Hsapiens.UCSC.hg18.knownGene_3.2.2.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "dependsOnMe": [ "FDb.InfiniumMethylation.hg18" ], "suggestsMe": [ "BiocOncoTK", "BSgenome.Hsapiens.UCSC.hg18", "CINdex", "methylPipe", "Rsamtools" ], "Rank": 41, "importsMe": [ "ChIPQC", "rCGH" ] }, "TxDb.Hsapiens.UCSC.hg19.knownGene": { "Package": "TxDb.Hsapiens.UCSC.hg19.knownGene", "Version": "3.2.2", "Depends": [ "GenomicFeatures (>= 1.21.30)" ], "Imports": [ "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "61be88a81433958571b57d0952be48a0", "NeedsCompilation": "no", "Title": "Annotation package for TxDb object(s)", "Description": "Exposes an annotation databases generated from UCSC by exposing these as TxDb objects", "biocViews": [ "AnnotationData", "Genetics", "Homo_sapiens", "TxDb" ], "Author": "Marc Carlson, Bioconductor Package Maintainer [cre]", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Homo sapiens", "source.ver": "src/contrib/TxDb.Hsapiens.UCSC.hg19.knownGene_3.2.2.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "dependsOnMe": [ "annotation", "chimera", "FDb.InfiniumMethylation.hg19", "FunciSNP", "Homo.sapiens", "TFEA.ChIP", "variants", "vulcan" ], "suggestsMe": [ "AllelicImbalance", "AnnotationDbi", "annotatr", "ATACseqQC", "beadarray", "BiocOncoTK", "BiocParallel", "biomvRCNS", "biovizBase", "BSgenome.Hsapiens.UCSC.hg19", "bumphunter", "cgdv17", "chipenrich.data", "ChIPpeakAnno", "chromPlot", "cpvSNP", "CRISPRseek", "derfinder", "derfinderPlot", "esATAC", "GA4GHclient", "GA4GHshiny", "gage", "geneAttribution", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "GenomicScores", "GenVisR", "ggbio", "gmapR", "GoogleGenomics", "gQTLstats", "groHMM", "GUIDEseq", "HTSeqGenie", "InPAS", "karyoploteR", "MAST", "methyAnalysis", "MutationalPatterns", "PureCN", "R3CPET", "regionReport", "RiboProfiling", "rtracklayer", "SGSeq", "SigFuge", "SplicingGraphs", "SummarizedExperiment", "trackViewer", "transcriptR", "tximport", "VariantAnnotation", "VariantFiltering" ], "Rank": 5, "importsMe": [ "ChIPQC", "ChIPseeker", "RareVariantVis", "rCGH" ] }, "TxDb.Hsapiens.UCSC.hg19.lincRNAsTranscripts": { "Package": "TxDb.Hsapiens.UCSC.hg19.lincRNAsTranscripts", "Version": "3.2.2", "Depends": [ "GenomicFeatures (>= 1.21.30)" ], "Imports": [ "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "a0d61cd90639c40b3d0bb6bdb043cf12", "NeedsCompilation": "no", "Title": "Annotation package for TxDb object(s)", "Description": "Exposes an annotation databases generated from UCSC by exposing these as TxDb objects", "biocViews": [ "AnnotationData", "Genetics", "Homo_sapiens", "TxDb" ], "Author": "Marc Carlson, Bioconductor Package Maintainer [cre]", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Homo sapiens", "source.ver": "src/contrib/TxDb.Hsapiens.UCSC.hg19.lincRNAsTranscripts_3.2.2.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 139, "suggestsMe": [ "GenomicFeatures" ] }, "TxDb.Hsapiens.UCSC.hg38.knownGene": { "Package": "TxDb.Hsapiens.UCSC.hg38.knownGene", "Version": "3.4.0", "Depends": [ "GenomicFeatures (>= 1.25.18)" ], "Imports": [ "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "1d5e07631ea58e96b11905d39e76ca6e", "NeedsCompilation": "no", "Title": "Annotation package for TxDb object(s)", "Description": "Exposes an annotation databases generated from UCSC by exposing these as TxDb objects", "biocViews": [ "AnnotationData", "Genetics", "Homo_sapiens", "TxDb" ], "Author": "Bioconductor Core Team, Bioconductor Package Maintainer [cre]", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Homo sapiens", "source.ver": "src/contrib/TxDb.Hsapiens.UCSC.hg38.knownGene_3.4.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "suggestsMe": [ "annotatr", "BSgenome", "BSgenome.Hsapiens.UCSC.hg38", "chipenrich.data", "ChIPpeakAnno", "geneAttribution", "GenomicFeatures", "genotypeeval", "GenVisR", "ideal", "Organism.dplyr", "Pbase", "podkat", "scmeth", "wiggleplotr" ], "Rank": 21, "dependsOnMe": [ "annotation" ], "importsMe": [ "rCGH" ] }, "TxDb.Mmulatta.UCSC.rheMac3.refGene": { "Package": "TxDb.Mmulatta.UCSC.rheMac3.refGene", "Version": "3.4.3", "Depends": [ "GenomicFeatures (>= 1.31.10)" ], "Imports": [ "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "dd316c584522f369f4db6d8ef53673f4", "NeedsCompilation": "no", "Title": "Annotation package for TxDb object(s)", "Description": "Exposes an annotation databases generated from UCSC by exposing these as TxDb objects", "biocViews": [ "AnnotationData", "Genetics", "Macaca_mulatta", "TxDb" ], "Author": "Bioconductor Core Team, Bioconductor Package Maintainer [cre]", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Macaca mulatta", "source.ver": "src/contrib/TxDb.Mmulatta.UCSC.rheMac3.refGene_3.4.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 824 }, "TxDb.Mmulatta.UCSC.rheMac8.refGene": { "Package": "TxDb.Mmulatta.UCSC.rheMac8.refGene", "Version": "3.4.3", "Depends": [ "GenomicFeatures (>= 1.31.10)" ], "Imports": [ "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "b7a894441ec61d7cdeca965df6541b5f", "NeedsCompilation": "no", "Title": "Annotation package for TxDb object(s)", "Description": "Exposes an annotation databases generated from UCSC by exposing these as TxDb objects", "biocViews": [ "AnnotationData", "Genetics", "Macaca_mulatta", "TxDb" ], "Author": "Bioconductor Core Team, Bioconductor Package Maintainer [cre]", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Macaca mulatta", "source.ver": "src/contrib/TxDb.Mmulatta.UCSC.rheMac8.refGene_3.4.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 779 }, "TxDb.Mmusculus.UCSC.mm10.ensGene": { "Package": "TxDb.Mmusculus.UCSC.mm10.ensGene", "Version": "3.4.0", "Depends": [ "GenomicFeatures (>= 1.25.17)" ], "Imports": [ "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "88d65b714d1f86b456aee2b8524e9d84", "NeedsCompilation": "no", "Title": "Annotation package for TxDb object(s)", "Description": "Exposes an annotation databases generated from UCSC by exposing these as TxDb objects", "biocViews": [ "AnnotationData", "Genetics", "Mus_musculus", "TxDb" ], "Author": "Bioconductor Core Team, Bioconductor Package Maintainer [cre]", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Mus musculus", "source.ver": "src/contrib/TxDb.Mmusculus.UCSC.mm10.ensGene_3.4.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 47, "suggestsMe": [ "Organism.dplyr" ], "dependsOnMe": [ "annotation", "simpleSingleCell" ] }, "TxDb.Mmusculus.UCSC.mm10.knownGene": { "Package": "TxDb.Mmusculus.UCSC.mm10.knownGene", "Version": "3.4.0", "Depends": [ "GenomicFeatures (>= 1.25.17)" ], "Imports": [ "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "86b7dca1b7d0d957c1794d261fc5bb81", "NeedsCompilation": "no", "Title": "Annotation package for TxDb object(s)", "Description": "Exposes an annotation databases generated from UCSC by exposing these as TxDb objects", "biocViews": [ "AnnotationData", "Genetics", "Mus_musculus", "TxDb" ], "Author": "Bioconductor Core Team, Bioconductor Package Maintainer [cre]", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Mus musculus", "source.ver": "src/contrib/TxDb.Mmusculus.UCSC.mm10.knownGene_3.4.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "dependsOnMe": [ "chipseqDB", "Mus.musculus" ], "suggestsMe": [ "annotatr", "BSgenome", "BSgenome.Mmusculus.UCSC.mm10", "chipenrich.data", "csaw", "epivizrData", "GenomicFeatures", "GenomicRanges", "InPAS" ], "Rank": 18, "importsMe": [ "ChIPQC" ] }, "TxDb.Mmusculus.UCSC.mm9.knownGene": { "Package": "TxDb.Mmusculus.UCSC.mm9.knownGene", "Version": "3.2.2", "Depends": [ "GenomicFeatures (>= 1.21.30)" ], "Imports": [ "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "cb72af039b011033477363bda8ed9104", "NeedsCompilation": "no", "Title": "Annotation package for TxDb object(s)", "Description": "Exposes an annotation databases generated from UCSC by exposing these as TxDb objects", "biocViews": [ "AnnotationData", "Genetics", "Mus_musculus", "TxDb" ], "Author": "Marc Carlson, Bioconductor Package Maintainer [cre]", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Mus musculus", "source.ver": "src/contrib/TxDb.Mmusculus.UCSC.mm9.knownGene_3.2.2.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "suggestsMe": [ "annotatr", "BSgenome.Mmusculus.UCSC.mm9", "CAGEfightR", "chipenrich.data", "chipseq", "compEpiTools", "ggbio", "INSPEcT" ], "Rank": 31, "importsMe": [ "ChIPQC", "CompGO" ] }, "TxDb.Ptroglodytes.UCSC.panTro4.refGene": { "Package": "TxDb.Ptroglodytes.UCSC.panTro4.refGene", "Version": "3.4.3", "Depends": [ "GenomicFeatures (>= 1.31.10)" ], "Imports": [ "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "cedc279e832ebe314e6fed2a2cdc66af", "NeedsCompilation": "no", "Title": "Annotation package for TxDb object(s)", "Description": "Exposes an annotation databases generated from UCSC by exposing these as TxDb objects", "biocViews": [ "AnnotationData", "Genetics", "Pan_troglodytes", "TxDb" ], "Author": "Bioconductor Core Team, Bioconductor Package Maintainer [cre]", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Pan troglodytes", "source.ver": "src/contrib/TxDb.Ptroglodytes.UCSC.panTro4.refGene_3.4.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 779 }, "TxDb.Ptroglodytes.UCSC.panTro5.refGene": { "Package": "TxDb.Ptroglodytes.UCSC.panTro5.refGene", "Version": "3.4.3", "Depends": [ "GenomicFeatures (>= 1.31.10)" ], "Imports": [ "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "b90f1ee9b0bced0641367e659bcca795", "NeedsCompilation": "no", "Title": "Annotation package for TxDb object(s)", "Description": "Exposes an annotation databases generated from UCSC by exposing these as TxDb objects", "biocViews": [ "AnnotationData", "Genetics", "Pan_troglodytes", "TxDb" ], "Author": "Bioconductor Core Team, Bioconductor Package Maintainer [cre]", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Pan troglodytes", "source.ver": "src/contrib/TxDb.Ptroglodytes.UCSC.panTro5.refGene_3.4.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 920 }, "TxDb.Rnorvegicus.BioMart.igis": { "Package": "TxDb.Rnorvegicus.BioMart.igis", "Version": "2.3.2", "Depends": [ "GenomicFeatures (>= 1.17.22)" ], "Imports": [ "GenomicFeatures", "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "eaf695f63cd021074d68c76d148cdfb7", "NeedsCompilation": "no", "Title": "Annotation package for TxDb object(s)", "Description": "Exposes an annotation databases generated from BioMart by exposing these as TxDb objects", "biocViews": [ "AnnotationData", "Genetics", "Rattus_norvegicus", "TxDb" ], "Author": "Gabriel Becker", "Maintainer": "Gabriel Becker ", "organism": "Rattus norvegicus", "source.ver": "src/contrib/TxDb.Rnorvegicus.BioMart.igis_2.3.2.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "TxDb.Rnorvegicus.UCSC.rn4.ensGene": { "Package": "TxDb.Rnorvegicus.UCSC.rn4.ensGene", "Version": "3.2.2", "Depends": [ "GenomicFeatures (>= 1.21.30)" ], "Imports": [ "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "6bf2ebc522c2828c036e52b2028792c1", "NeedsCompilation": "no", "Title": "Annotation package for TxDb object(s)", "Description": "Exposes an annotation databases generated from UCSC by exposing these as TxDb objects", "biocViews": [ "AnnotationData", "Genetics", "Rattus_norvegicus", "TxDb" ], "Author": "Marc Carlson, Bioconductor Package Maintainer [cre]", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Rattus norvegicus", "source.ver": "src/contrib/TxDb.Rnorvegicus.UCSC.rn4.ensGene_3.2.2.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "suggestsMe": [ "annotatr", "BSgenome.Rnorvegicus.UCSC.rn4", "chipenrich.data" ], "Rank": 46, "importsMe": [ "ChIPQC" ] }, "TxDb.Rnorvegicus.UCSC.rn5.refGene": { "Package": "TxDb.Rnorvegicus.UCSC.rn5.refGene", "Version": "3.4.3", "Depends": [ "GenomicFeatures (>= 1.31.10)" ], "Imports": [ "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "4dafbc7e60e8fb947d40571fa3812699", "NeedsCompilation": "no", "Title": "Annotation package for TxDb object(s)", "Description": "Exposes an annotation databases generated from UCSC by exposing these as TxDb objects", "biocViews": [ "AnnotationData", "Genetics", "Rattus_norvegicus", "TxDb" ], "Author": "Bioconductor Core Team, Bioconductor Package Maintainer [cre]", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Rattus norvegicus", "source.ver": "src/contrib/TxDb.Rnorvegicus.UCSC.rn5.refGene_3.4.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "dependsOnMe": [ "Rattus.norvegicus" ], "suggestsMe": [ "annotatr", "BSgenome.Rnorvegicus.UCSC.rn5", "chipenrich.data" ], "Rank": 59 }, "TxDb.Rnorvegicus.UCSC.rn6.refGene": { "Package": "TxDb.Rnorvegicus.UCSC.rn6.refGene", "Version": "3.4.3", "Depends": [ "GenomicFeatures (>= 1.31.10)" ], "Imports": [ "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "502c29bc0eb476938794a01c2d8ce269", "NeedsCompilation": "no", "Title": "Annotation package for TxDb object(s)", "Description": "Exposes an annotation databases generated from UCSC by exposing these as TxDb objects", "biocViews": [ "AnnotationData", "Genetics", "Rattus_norvegicus", "TxDb" ], "Author": "Bioconductor Core Team, Bioconductor Package Maintainer [cre]", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Rattus norvegicus", "source.ver": "src/contrib/TxDb.Rnorvegicus.UCSC.rn6.refGene_3.4.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 78, "suggestsMe": [ "annotatr", "chipenrich.data" ] }, "TxDb.Scerevisiae.UCSC.sacCer2.sgdGene": { "Package": "TxDb.Scerevisiae.UCSC.sacCer2.sgdGene", "Version": "3.2.2", "Depends": [ "GenomicFeatures (>= 1.21.30)" ], "Imports": [ "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "8ce83ef2ba6cfc69f9b4435a0a047819", "NeedsCompilation": "no", "Title": "Annotation package for TxDb object(s)", "Description": "Exposes an annotation databases generated from UCSC by exposing these as TxDb objects", "biocViews": [ "AnnotationData", "Genetics", "Saccharomyces_cerevisiae", "TxDb" ], "Author": "Marc Carlson, Bioconductor Package Maintainer [cre]", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Saccharomyces cerevisiae", "source.ver": "src/contrib/TxDb.Scerevisiae.UCSC.sacCer2.sgdGene_3.2.2.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 319 }, "TxDb.Scerevisiae.UCSC.sacCer3.sgdGene": { "Package": "TxDb.Scerevisiae.UCSC.sacCer3.sgdGene", "Version": "3.2.2", "Depends": [ "GenomicFeatures (>= 1.21.30)" ], "Imports": [ "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "afb23b3265730b9e59c2f07ab37cc3a0", "NeedsCompilation": "no", "Title": "Annotation package for TxDb object(s)", "Description": "Exposes an annotation databases generated from UCSC by exposing these as TxDb objects", "biocViews": [ "AnnotationData", "Genetics", "Saccharomyces_cerevisiae", "TxDb" ], "Author": "Marc Carlson, Bioconductor Package Maintainer [cre]", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Saccharomyces cerevisiae", "source.ver": "src/contrib/TxDb.Scerevisiae.UCSC.sacCer3.sgdGene_3.2.2.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 116, "dependsOnMe": [ "generegulation" ] }, "TxDb.Sscrofa.UCSC.susScr11.refGene": { "Package": "TxDb.Sscrofa.UCSC.susScr11.refGene", "Version": "3.4.3", "Depends": [ "GenomicFeatures (>= 1.31.10)" ], "Imports": [ "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "2c769fbee0b77aae2b36397c9b86b43a", "NeedsCompilation": "no", "Title": "Annotation package for TxDb object(s)", "Description": "Exposes an annotation databases generated from UCSC by exposing these as TxDb objects", "biocViews": [ "AnnotationData", "Genetics", "Sus_scrofa", "TxDb" ], "Author": "Bioconductor Core Team, Bioconductor Package Maintainer [cre]", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Sus scrofa", "source.ver": "src/contrib/TxDb.Sscrofa.UCSC.susScr11.refGene_3.4.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 910 }, "TxDb.Sscrofa.UCSC.susScr3.refGene": { "Package": "TxDb.Sscrofa.UCSC.susScr3.refGene", "Version": "3.4.3", "Depends": [ "GenomicFeatures (>= 1.31.10)" ], "Imports": [ "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "35a9c97a6322d1332ac1a34beb26b168", "NeedsCompilation": "no", "Title": "Annotation package for TxDb object(s)", "Description": "Exposes an annotation databases generated from UCSC by exposing these as TxDb objects", "biocViews": [ "AnnotationData", "Genetics", "Sus_scrofa", "TxDb" ], "Author": "Bioconductor Core Team, Bioconductor Package Maintainer [cre]", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Sus scrofa", "source.ver": "src/contrib/TxDb.Sscrofa.UCSC.susScr3.refGene_3.4.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 824 }, "u133aaofav2cdf": { "Package": "u133aaofav2cdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "716483ddb6664b8b7f0c58cd21136e8b", "NeedsCompilation": "no", "Title": "u133aaofav2cdf", "Description": "A package containing an environment representing the U133AAofAv2.CDF file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "u133aaofav2" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/u133aaofav2cdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 246 }, "u133x3p.db": { "Package": "u133x3p.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Hs.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "1a36a09dc64b94728bf6ac75600b40c6", "NeedsCompilation": "no", "Title": "Affymetrix Human X3P Array annotation data (chip u133x3p)", "Description": "Affymetrix Human X3P Array annotation data (chip u133x3p) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Homo_sapiens", "u133x3p" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Homo sapiens", "manufacturer": "Affymetrix", "source.ver": "src/contrib/u133x3p.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 206 }, "u133x3pcdf": { "Package": "u133x3pcdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "ee4e62041bc8c63813e8cf8400ece2f3", "NeedsCompilation": "no", "Title": "u133x3pcdf", "Description": "A package containing an environment representing the U133_X3P.cdf file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "cdf", "u133x3p" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/u133x3pcdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 291 }, "u133x3pprobe": { "Package": "u133x3pprobe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "81e2b00985688160805147bef0c638be", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type u133x3p", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was U133\\_X3P\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Homo_sapiens", "probe", "u133x3p" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/u133x3pprobe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 726 }, "vitisviniferacdf": { "Package": "vitisviniferacdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "8eb491f3ffa3ff0814f5c155787ae160", "NeedsCompilation": "no", "Title": "vitisviniferacdf", "Description": "A package containing an environment representing the Vitis_Vinifera.cdf file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Vitis_vinifera", "cdf", "vitisvinifera" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/vitisviniferacdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 591 }, "vitisviniferaprobe": { "Package": "vitisviniferaprobe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "386c0d5e37896d073ac20970e88b3160", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type vitisvinifera", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Vitis\\_Vinifera\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Vitis_vinifera", "probe", "vitisvinifera" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/vitisviniferaprobe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 824 }, "wheatcdf": { "Package": "wheatcdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "0abeeeb9700b8d93a1a83769bdd8480f", "NeedsCompilation": "no", "Title": "wheatcdf", "Description": "A package containing an environment representing the wheat.cdf file.", "biocViews": [ "Aegilops_tauschii", "AffymetrixChip", "AnnotationData", "Triticum_sp", "cdf", "wheat" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/wheatcdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "wheatprobe": { "Package": "wheatprobe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "b602d5050239850515be9dce12286360", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type wheat", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was wheat\\_probe\\_tab.", "biocViews": [ "Aegilops_tauschii", "AffymetrixChip", "AnnotationData", "Triticum_sp", "probe", "wheat" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/wheatprobe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 726 }, "worm.db0": { "Package": "worm.db0", "Version": "3.6.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.41.4)" ], "Imports": [ "methods", "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "999f3a969fdb3b9eac4c2fc80864efac", "NeedsCompilation": "no", "Title": "Base Level Annotation databases for worm", "Description": "Base annotation databases for worm, intended ONLY to be used by AnnotationDbi to produce regular annotation packages.", "biocViews": [ "AnnotationData", "Caenorhabditis_elegans", "db0" ], "Author": "Bioconductor Core Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Caenorhabditis elegans", "source.ver": "src/contrib/worm.db0_3.6.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 875 }, "xenopus.db0": { "Package": "xenopus.db0", "Version": "3.6.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.41.4)" ], "Imports": [ "methods", "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "dbf69a58513a06a470596b1d3d65a8c5", "NeedsCompilation": "no", "Title": "Base Level Annotation databases for xenopus", "Description": "Base annotation databases for xenopus, intended ONLY to be used by AnnotationDbi to produce regular annotation packages.", "biocViews": [ "AnnotationData", "Xenopus_laevis", "db0" ], "Author": "Bioconductor Core Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Xenopus laevis", "source.ver": "src/contrib/xenopus.db0_3.6.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 824 }, "xenopuslaeviscdf": { "Package": "xenopuslaeviscdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "9d09ff76471ae60faf71090e0638f240", "NeedsCompilation": "no", "Title": "xenopuslaeviscdf", "Description": "A package containing an environment representing the Xenopus_laevis.cdf file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Xenopis_laevis", "cdf", "xenopuslaevis" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/xenopuslaeviscdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 726 }, "xenopuslaevisprobe": { "Package": "xenopuslaevisprobe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "06a25268a5ab57bddf28bbb364ea977b", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type xenopuslaevis", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Xenopus\\_laevis\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Xenopis_laevis", "probe", "xenopuslaevis" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/xenopuslaevisprobe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 824 }, "xlaevis.db": { "Package": "xlaevis.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Xl.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "deaffe47b4ee48a7edb159d8104dc241", "NeedsCompilation": "no", "Title": "Affymetrix Xenopus laevis annotation data (chip xlaevis)", "Description": "Affymetrix Xenopus laevis annotation data (chip xlaevis) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Xenopus_laevis", "xlaevis" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Xenopus laevis", "manufacturer": "Affymetrix", "source.ver": "src/contrib/xlaevis.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "xlaevis2cdf": { "Package": "xlaevis2cdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "9e4a80d66397299b4e66a8d6715ca4aa", "NeedsCompilation": "no", "Title": "xlaevis2cdf", "Description": "A package containing an environment representing the X_laevis_2.CDF file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Xenopis_tropicalis", "cdf", "xlaevis2" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/xlaevis2cdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 726 }, "xlaevis2probe": { "Package": "xlaevis2probe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "d86f8a05e106eb3123435da233ff851d", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type xlaevis2", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was X\\_laevis\\_2\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Xenopis_laevis", "probe", "xlaevis2" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/xlaevis2probe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 824 }, "XtraSNPlocs.Hsapiens.dbSNP141.GRCh38": { "Package": "XtraSNPlocs.Hsapiens.dbSNP141.GRCh38", "Version": "0.99.12", "Depends": [ "R (>= 2.10)", "S4Vectors", "IRanges", "GenomeInfoDb", "GenomicRanges", "BSgenome (>= 1.35.5)" ], "Imports": [ "methods", "utils", "S4Vectors", "IRanges", "GenomeInfoDb", "GenomicRanges", "BSgenome" ], "Suggests": [ "SNPlocs.Hsapiens.dbSNP141.GRCh38", "BSgenome.Hsapiens.NCBI.GRCh38 (>= 1.3.19)" ], "License": "Artistic-2.0", "MD5sum": "2b9d4036b9baff400a811fd69c910cff", "NeedsCompilation": "no", "Title": "Extra SNP locations for Homo sapiens (dbSNP Build 141)", "Description": "Extra SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 141. The source data files used for this package were created by NCBI on May 1st, 2014, and contain SNPs mapped to reference genome GRCh38. While the SNPlocs.Hsapiens.dbSNP141.GRCh38 package contains only molecular variations of class \"snp\", this package contains molecular variations of other classes (in-del, heterozygous, microsatellite, named-locus, no-variation, mixed, and multinucleotide-polymorphism).", "biocViews": [ "AnnotationData", "Genetics", "Homo_sapiens", "XtraSNPlocs" ], "Author": "Herve Pages", "Maintainer": "H. Pages ", "organism": "Homo sapiens", "source.ver": "src/contrib/XtraSNPlocs.Hsapiens.dbSNP141.GRCh38_0.99.12.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 458 }, "XtraSNPlocs.Hsapiens.dbSNP144.GRCh37": { "Package": "XtraSNPlocs.Hsapiens.dbSNP144.GRCh37", "Version": "0.99.12", "Depends": [ "R (>= 2.10)", "BSgenome" ], "Imports": [ "methods", "utils", "BiocGenerics", "S4Vectors", "IRanges", "GenomeInfoDb", "GenomicRanges", "BSgenome" ], "Suggests": [ "Biostrings", "BSgenome.Hsapiens.UCSC.hg19", "SNPlocs.Hsapiens.dbSNP144.GRCh37" ], "License": "Artistic-2.0", "MD5sum": "758d024c50d2349036dc27cc689b4e5a", "NeedsCompilation": "no", "Title": "Extra SNP locations for Homo sapiens (dbSNP Build 144)", "Description": "Extra SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 144. The source data files used for this package were created by NCBI on May 29-30, 2015, and contain SNPs mapped to reference genome GRCh37.p13 (a patched version of GRCh37 that doesn't alter chromosomes 1-22, X, Y, MT). While the SNPlocs.Hsapiens.dbSNP144.GRCh37 package contains only molecular variations of class \"snp\", this package contains molecular variations of other classes (in-del, heterozygous, microsatellite, named-locus, no-variation, mixed, and multinucleotide-polymorphism).", "biocViews": [ "AnnotationData", "Genetics", "Homo_sapiens", "XtraSNPlocs" ], "Author": "Herve Pages", "Maintainer": "H. Pages ", "organism": "Homo sapiens", "source.ver": "src/contrib/XtraSNPlocs.Hsapiens.dbSNP144.GRCh37_0.99.12.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 396 }, "XtraSNPlocs.Hsapiens.dbSNP144.GRCh38": { "Package": "XtraSNPlocs.Hsapiens.dbSNP144.GRCh38", "Version": "0.99.12", "Depends": [ "R (>= 2.10)", "BSgenome" ], "Imports": [ "methods", "utils", "BiocGenerics", "S4Vectors", "IRanges", "GenomeInfoDb", "GenomicRanges", "BSgenome" ], "Suggests": [ "Biostrings", "BSgenome.Hsapiens.UCSC.hg38", "SNPlocs.Hsapiens.dbSNP144.GRCh38" ], "License": "Artistic-2.0", "MD5sum": "c617aa805c7ecf60ee9283eb3c51b1c7", "NeedsCompilation": "no", "Title": "Extra SNP locations for Homo sapiens (dbSNP Build 144)", "Description": "Extra SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 144. The source data files used for this package were created by NCBI on May 30, 2015, and contain SNPs mapped to reference genome GRCh38.p2 (a patched version of GRCh38 that doesn't alter chromosomes 1-22, X, Y, MT). While the SNPlocs.Hsapiens.dbSNP144.GRCh38 package contains only molecular variations of class \"snp\", this package contains molecular variations of other classes (in-del, heterozygous, microsatellite, named-locus, no-variation, mixed, and multinucleotide-polymorphism).", "biocViews": [ "AnnotationData", "Genetics", "Homo_sapiens", "XtraSNPlocs" ], "Author": "Herve Pages", "Maintainer": "H. Pages ", "organism": "Homo sapiens", "source.ver": "src/contrib/XtraSNPlocs.Hsapiens.dbSNP144.GRCh38_0.99.12.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 233, "suggestsMe": [ "BSgenome" ] }, "xtropicaliscdf": { "Package": "xtropicaliscdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "253e3cde76a393789e124f395820e947", "NeedsCompilation": "no", "Title": "xtropicaliscdf", "Description": "A package containing an environment representing the X_tropicalis.cdf file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Xenopis_laevis", "cdf", "xtropicalis" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/xtropicaliscdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 644 }, "xtropicalisprobe": { "Package": "xtropicalisprobe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "43d15a7e12edaec1bb5f24b87498b599", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type xtropicalis", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was X\\_tropicalis\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Xenopus_tropicalis", "probe", "xtropicalis" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/xtropicalisprobe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 779 }, "ye6100subacdf": { "Package": "ye6100subacdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "27bd71410956bfe8bffc8de14b85bdb0", "NeedsCompilation": "no", "Title": "ye6100subacdf", "Description": "A package containing an environment representing the Ye6100subA.CDF file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Saccharomyces_cerevisiae", "cdf", "ye6100suba" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/ye6100subacdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 726 }, "ye6100subbcdf": { "Package": "ye6100subbcdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "ee9ec4bd941940745bad538d79bfeab4", "NeedsCompilation": "no", "Title": "ye6100subbcdf", "Description": "A package containing an environment representing the Ye6100subB.CDF file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Saccharomyces_cerevisiae", "cdf", "ye6100subb" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/ye6100subbcdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 824 }, "ye6100subccdf": { "Package": "ye6100subccdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "fcdfed29a695fe53b62bacfe13dfe0c1", "NeedsCompilation": "no", "Title": "ye6100subccdf", "Description": "A package containing an environment representing the Ye6100subC.CDF file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Saccharomyces_cerevisiae", "cdf", "ye6100subc" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/ye6100subccdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 591 }, "ye6100subdcdf": { "Package": "ye6100subdcdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "521b501ddbcdc680c3d27b5b201029b1", "NeedsCompilation": "no", "Title": "ye6100subdcdf", "Description": "A package containing an environment representing the Ye6100subD.CDF file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Saccharomyces_cerevisiae", "cdf", "ye6100subd" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/ye6100subdcdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 529 }, "yeast.db0": { "Package": "yeast.db0", "Version": "3.6.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.41.4)" ], "Imports": [ "methods", "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "3e7b38bd7497efb135b99ccfebad89ae", "NeedsCompilation": "no", "Title": "Base Level Annotation databases for yeast", "Description": "Base annotation databases for yeast, intended ONLY to be used by AnnotationDbi to produce regular annotation packages.", "biocViews": [ "AnnotationData", "Saccharomyces_cerevisiae", "db0" ], "Author": "Bioconductor Core Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Saccharomyces cerevisiae", "source.ver": "src/contrib/yeast.db0_3.6.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 779 }, "yeast2.db": { "Package": "yeast2.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Sc.sgd.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "818981b9562630e8a219dbe23a316e08", "NeedsCompilation": "no", "Title": "Affymetrix Yeast Genome 2.0 Array annotation data (chip yeast2)", "Description": "Affymetrix Yeast Genome 2.0 Array annotation data (chip yeast2) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Saccharomyces_cerevisiae", "yeast2" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Saccharomyces cerevisiae", "manufacturer": "Affymetrix", "source.ver": "src/contrib/yeast2.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 158, "suggestsMe": [ "piano" ] }, "yeast2cdf": { "Package": "yeast2cdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "0a718d78ae56bef9bad8168123038ac8", "NeedsCompilation": "no", "Title": "yeast2cdf", "Description": "A package containing an environment representing the Yeast_2.cdf file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Saccharomyces_cerevisiae", "cdf", "yeast2" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/yeast2cdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 211 }, "yeast2probe": { "Package": "yeast2probe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "3f52a2b7bd379624bc2966ca28c9ddf9", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type yeast2", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Yeast\\_2\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Saccharomyces_cerevisiae", "probe", "yeast2" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/yeast2probe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 396 }, "ygs98.db": { "Package": "ygs98.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Sc.sgd.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "ddbf44a3db85a114be4477f917f3a724", "NeedsCompilation": "no", "Title": "Affymetrix Yeast Genome S98 Array annotation data (chip ygs98)", "Description": "Affymetrix Yeast Genome S98 Array annotation data (chip ygs98) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Saccharomyces_cerevisiae", "ygs98" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Saccharomyces cerevisiae", "manufacturer": "Affymetrix", "source.ver": "src/contrib/ygs98.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 246 }, "ygs98cdf": { "Package": "ygs98cdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "ec7df7564cf28e093646325ec55baf1e", "NeedsCompilation": "no", "Title": "ygs98cdf", "Description": "A package containing an environment representing the YG_S98.cdf file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Saccharomyces_cerevisiae", "cdf", "ygs98" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/ygs98cdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 306 }, "ygs98frmavecs": { "Package": "ygs98frmavecs", "Version": "1.3.0", "Depends": [ "R (>= 2.10.0)" ], "License": "GPL (>= 2)", "MD5sum": "e78c8447eb381b91dafb2f9688da39dc", "NeedsCompilation": "no", "Title": "Vectors used by frma for microarrays of type ygs98", "Description": "This package was created by frmaTools version 1.19.3 and hgu133ahsentrezgcdf version 19.0.0.", "biocViews": [ "AffymetrixChip", "AnnotationData", "FRMA", "Yeast", "ygs98" ], "Author": "Matthew N. McCall , Rafael A. Irizarry ", "Maintainer": "Matthew N. McCall ", "source.ver": "src/contrib/ygs98frmavecs_1.3.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 875 }, "ygs98probe": { "Package": "ygs98probe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "f40f21d7074818a4ee74a45b5533e89d", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type ygs98", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was YG-S98\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Saccharomyces_cerevisiae", "probe", "ygs98" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/ygs98probe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 591 }, "zebrafish.db": { "Package": "zebrafish.db", "Version": "3.2.3", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.34.3)", "org.Dr.eg.db (>= 3.3.0)" ], "Imports": [ "methods", "AnnotationDbi" ], "Suggests": [ "DBI", "annotate", "RUnit" ], "License": "Artistic-2.0", "MD5sum": "bd3924751e782a01b08d82b0aae07579", "NeedsCompilation": "no", "Title": "Affymetrix zebrafish annotation data (chip zebrafish)", "Description": "Affymetrix zebrafish annotation data (chip zebrafish) assembled using data from public repositories", "biocViews": [ "AffymetrixChip", "AnnotationData", "ChipDb", "Danio_rerio", "zebrafish" ], "Author": "Marc Carlson", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Danio rerio", "manufacturer": "Affymetrix", "source.ver": "src/contrib/zebrafish.db_3.2.3.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 306 }, "zebrafish.db0": { "Package": "zebrafish.db0", "Version": "3.6.0", "Depends": [ "R (>= 2.7.0)", "methods", "AnnotationDbi (>= 1.41.4)" ], "Imports": [ "methods", "AnnotationDbi" ], "License": "Artistic-2.0", "MD5sum": "60910f0883940ffa697be9944fdd61a2", "NeedsCompilation": "no", "Title": "Base Level Annotation databases for zebrafish", "Description": "Base annotation databases for zebrafish, intended ONLY to be used by AnnotationDbi to produce regular annotation packages.", "biocViews": [ "AnnotationData", "Danio_rerio", "db0" ], "Author": "Bioconductor Core Team", "Maintainer": "Bioconductor Package Maintainer ", "organism": "Danio rerio", "source.ver": "src/contrib/zebrafish.db0_3.6.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 726 }, "zebrafishcdf": { "Package": "zebrafishcdf", "Version": "2.18.0", "Depends": [ "utils" ], "Imports": [ "AnnotationDbi" ], "License": "LGPL", "MD5sum": "04edbb632600c97610b86423c2d850e7", "NeedsCompilation": "no", "Title": "zebrafishcdf", "Description": "A package containing an environment representing the Zebrafish.cdf file.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Danio_rerio", "cdf", "zebrafish" ], "Author": "The Bioconductor Project", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/zebrafishcdf_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 291 }, "zebrafishprobe": { "Package": "zebrafishprobe", "Version": "2.18.0", "Depends": [ "R (>= 1.6)", "AnnotationDbi (>= 1.11.21)" ], "License": "LGPL", "MD5sum": "eea2747859afa763addc7313ab0a2452", "NeedsCompilation": "no", "Title": "Probe sequence data for microarrays of type zebrafish", "Description": "This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Zebrafish\\_probe\\_tab.", "biocViews": [ "AffymetrixChip", "AnnotationData", "Danio_rerio", "probe", "zebrafish" ], "Author": "The Bioconductor Project www.bioconductor.org", "Maintainer": "Bioconductor Package Maintainer ", "source.ver": "src/contrib/zebrafishprobe_2.18.0.tar.gz", "hasREADME": false, "hasNEWS": false, "hasINSTALL": false, "hasLICENSE": false, "Rank": 779 } }